Wall clock time and date at job start Tue Mar 31 2020 18:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48502 * 109.46980 * 355.31954 * 3 2 1 5 5 H 1.48501 * 109.46832 * 115.31660 * 3 2 1 6 6 H 1.48495 * 109.47214 * 235.31903 * 3 2 1 7 7 C 1.38808 * 119.99758 * 180.27956 * 2 1 3 8 8 H 1.08004 * 120.00239 * 352.36434 * 7 2 1 9 9 N 1.36944 * 119.99887 * 172.36849 * 7 2 1 10 10 C 1.47058 * 136.05788 * 6.52764 * 9 7 2 11 11 C 1.53749 * 87.89054 * 152.96179 * 10 9 7 12 12 O 1.42899 * 114.39541 * 272.67544 * 11 10 9 13 13 C 1.53007 * 114.08694 * 139.77849 * 11 10 9 14 14 N 1.46494 * 109.46928 * 86.56529 * 13 11 10 15 15 C 1.34781 * 119.99862 * 179.97438 * 14 13 11 16 16 O 1.21280 * 119.99746 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00044 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47009 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.46946 * 179.97438 * 18 17 15 20 20 O 1.42908 * 109.46950 * 179.97438 * 19 18 17 21 21 C 1.35912 * 116.99551 * 180.02562 * 20 19 18 22 22 C 1.39146 * 120.46668 * 179.72321 * 21 20 19 23 23 C 1.38535 * 118.37030 * 179.71068 * 22 21 20 24 24 C 1.38260 * 119.22272 * 0.58015 * 23 22 21 25 25 N 1.31854 * 120.88390 * 359.68073 * 24 23 22 26 26 C 1.31837 * 121.77746 * 0.02562 * 25 24 23 27 27 C 1.47066 * 136.05683 * 186.89762 * 9 7 2 28 28 H 0.96999 * 119.99710 * 185.10483 * 1 2 3 29 29 H 1.09001 * 113.46851 * 267.69866 * 10 9 7 30 30 H 1.09001 * 113.47037 * 38.13172 * 10 9 7 31 31 H 0.96703 * 113.99848 * 273.58159 * 12 11 10 32 32 H 1.09001 * 109.46510 * 206.56068 * 13 11 10 33 33 H 1.08998 * 109.47097 * 326.55971 * 13 11 10 34 34 H 0.96997 * 120.00500 * 359.97438 * 14 13 11 35 35 H 1.09004 * 109.46965 * 299.99944 * 17 15 14 36 36 H 1.08998 * 109.47319 * 60.00120 * 17 15 14 37 37 H 1.09001 * 109.47194 * 300.00184 * 18 17 15 38 38 H 1.08998 * 109.47177 * 59.99794 * 18 17 15 39 39 H 1.08989 * 109.47588 * 299.99791 * 19 18 17 40 40 H 1.09000 * 109.46893 * 60.00314 * 19 18 17 41 41 H 1.07996 * 120.81256 * 359.97438 * 22 21 20 42 42 H 1.07997 * 120.38847 * 180.26173 * 23 22 21 43 43 H 1.07995 * 119.55774 * 179.70181 * 24 23 22 44 44 H 1.08010 * 119.65248 * 179.97438 * 26 25 24 45 45 H 1.09007 * 113.46852 * 321.86298 * 27 9 7 46 46 H 1.08998 * 113.47074 * 92.24182 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2893 2.7441 -0.1142 5 1 3.0162 1.7470 1.2656 6 1 3.1876 1.6481 -1.1513 7 6 2.0102 -1.2021 -0.0059 8 1 1.4774 -2.1339 0.1139 9 7 3.3705 -1.2066 -0.1634 10 6 4.4319 -0.1910 -0.2326 11 6 5.4053 -1.2538 0.3029 12 8 5.4631 -1.3365 1.7283 13 6 6.7836 -1.2293 -0.3611 14 7 7.6440 -0.2695 0.3351 15 6 8.9127 -0.0789 -0.0777 16 8 9.3420 -0.7017 -1.0258 17 6 9.7977 0.9089 0.6380 18 6 11.1759 0.9333 -0.0259 19 6 12.0741 1.9366 0.7004 20 8 13.3616 1.9589 0.0807 21 6 14.2859 2.8038 0.6088 22 6 15.5647 2.8795 0.0655 23 6 16.4706 3.7598 0.6342 24 6 16.0816 4.5195 1.7219 25 7 14.8633 4.4198 2.2162 26 6 13.9699 3.5987 1.7007 27 6 4.4122 -2.2289 -0.3444 28 1 -0.4850 -0.8367 0.0747 29 1 4.6580 0.1320 -1.2487 30 1 4.2791 0.6438 0.4515 31 1 6.0897 -0.7211 2.1329 32 1 7.2300 -2.2223 -0.3082 33 1 6.6788 -0.9331 -1.4048 34 1 7.3006 0.2288 1.0931 35 1 9.3513 1.9019 0.5844 36 1 9.9020 0.6133 1.6819 37 1 11.6224 -0.0597 0.0273 38 1 11.0712 1.2291 -1.0697 39 1 11.6275 2.9293 0.6468 40 1 12.1789 1.6411 1.7443 41 1 15.8427 2.2699 -0.7816 42 1 17.4705 3.8479 0.2358 43 1 16.7850 5.2040 2.1726 44 1 12.9818 3.5442 2.1333 45 1 4.2426 -3.1304 0.2445 46 1 4.6324 -2.4440 -1.3900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699922953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:54 Heat of formation + Delta-G solvation = -20.327584 kcal Electronic energy + Delta-G solvation = -27400.252844 eV Core-core repulsion = 23292.917640 eV Total energy + Delta-G solvation = -4107.335204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.07855 -40.25614 -39.17796 -38.63819 -35.39943 -34.41955 -34.21795 -32.76776 -32.31299 -30.77186 -29.39426 -27.80339 -25.83662 -25.58843 -24.31322 -23.51163 -22.19330 -21.41158 -20.68098 -19.69234 -18.85690 -17.97000 -17.50613 -17.11391 -17.02231 -16.99524 -16.46907 -16.02496 -15.75642 -15.11652 -14.95251 -14.60692 -14.48038 -14.11901 -14.01899 -13.74177 -13.56410 -13.41063 -13.26009 -13.02003 -12.85243 -12.73326 -12.51857 -12.19497 -11.96797 -11.81138 -11.67408 -11.19698 -11.06446 -10.59596 -10.40176 -10.22233 -10.14769 -10.02378 -9.94085 -9.33896 -9.24689 -8.98835 -8.95897 -8.90386 -7.20044 -6.35098 -3.25581 0.60697 0.79063 2.41647 2.43191 3.00917 3.30658 3.32467 3.37685 3.59262 3.98297 4.12663 4.16983 4.25877 4.37173 4.37366 4.48385 4.51184 4.54975 4.56488 4.68940 4.75181 4.81860 4.84956 4.95911 4.98521 5.04189 5.13029 5.43996 5.45206 5.48482 5.57694 5.59164 5.76561 5.77003 5.98028 6.01768 6.06391 6.08950 6.23668 6.29130 6.47357 6.72937 7.03266 7.20897 7.45550 7.77579 7.99350 8.20694 8.94338 9.45900 10.29833 11.17750 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023158 B = 0.001715 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.811548 B =16324.983545 C =17049.588387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.026 4.026 3 Si 1.074 2.926 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.301 4.301 8 H 0.084 0.916 9 N -0.617 5.617 10 C 0.077 3.923 11 C 0.070 3.930 12 O -0.518 6.518 13 C 0.105 3.895 14 N -0.728 5.728 15 C 0.515 3.485 16 O -0.537 6.537 17 C -0.139 4.139 18 C -0.103 4.103 19 C 0.056 3.944 20 O -0.306 6.306 21 C 0.083 3.917 22 C -0.111 4.111 23 C -0.132 4.132 24 C 0.056 3.944 25 N -0.451 5.451 26 C 0.015 3.985 27 C 0.139 3.861 28 H 0.261 0.739 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.362 0.638 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.398 0.602 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.057 0.943 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.992 6.845 3.054 33.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.224 4.224 3 Si 0.907 3.093 4 H -0.222 1.222 5 H -0.223 1.223 6 H -0.215 1.215 7 C -0.427 4.427 8 H 0.102 0.898 9 N -0.345 5.345 10 C -0.049 4.049 11 C 0.027 3.973 12 O -0.322 6.322 13 C -0.019 4.019 14 N -0.382 5.382 15 C 0.301 3.699 16 O -0.414 6.414 17 C -0.180 4.180 18 C -0.141 4.141 19 C -0.020 4.020 20 O -0.218 6.218 21 C 0.035 3.965 22 C -0.137 4.137 23 C -0.151 4.151 24 C -0.101 4.101 25 N -0.160 5.160 26 C -0.143 4.143 27 C 0.012 3.988 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.208 0.792 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.233 0.767 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.175 0.825 44 H 0.176 0.824 45 H 0.075 0.925 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 32.080 7.906 2.770 33.156 hybrid contribution 0.470 -1.433 -0.043 1.509 sum 32.550 6.473 2.728 33.299 Atomic orbital electron populations 1.70916 1.05254 1.29481 1.51975 1.25730 0.96485 1.00934 0.99295 0.83651 0.73824 0.76011 0.75860 1.22191 1.22299 1.21523 1.20125 0.78202 0.95899 1.48443 0.89815 1.45696 1.02136 1.01390 1.85248 1.23496 0.88478 0.94250 0.98678 1.23322 0.91045 1.01199 0.81731 1.86694 1.65246 1.62770 1.17460 1.21960 0.89526 0.93180 0.97270 1.45978 1.12742 1.44097 1.35370 1.20475 0.81950 0.83241 0.84221 1.90735 1.73866 1.48640 1.28139 1.21540 0.95022 1.00224 1.01168 1.21219 0.92141 0.99999 1.00769 1.22942 0.81181 1.00635 0.97193 1.86095 1.21929 1.58222 1.55600 1.20092 0.90499 0.91739 0.94137 1.21005 0.90778 1.00395 1.01561 1.22053 1.00487 0.95799 0.96788 1.22698 0.93250 0.99356 0.94824 1.67540 1.02370 1.17134 1.28941 1.22970 1.00370 0.95705 0.95225 1.22338 0.85706 0.93758 0.97009 0.92879 0.92868 0.92698 0.79176 0.90454 0.89886 0.76736 0.88208 0.88271 0.89766 0.89726 0.91412 0.91462 0.83904 0.83996 0.82471 0.82424 0.92471 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.57 13.70 55.49 0.76 -28.81 16 2 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 3 Si 1.07 26.52 25.13 -169.99 -4.27 22.25 16 4 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 5 H -0.29 -6.82 6.64 56.52 0.38 -6.45 16 6 H -0.29 -6.56 6.13 56.52 0.35 -6.21 16 7 C -0.30 -8.74 11.08 -15.06 -0.17 -8.91 16 8 H 0.08 2.57 8.05 -52.48 -0.42 2.14 16 9 N -0.62 -15.11 3.69 -184.62 -0.68 -15.79 16 10 C 0.08 1.55 5.13 -8.39 -0.04 1.50 16 11 C 0.07 1.13 1.74 -89.97 -0.16 0.98 16 12 O -0.52 -8.32 13.56 -35.23 -0.48 -8.80 16 13 C 0.11 1.35 5.43 -4.04 -0.02 1.33 16 14 N -0.73 -7.26 5.34 -60.29 -0.32 -7.58 16 15 C 0.51 5.32 7.83 -10.98 -0.09 5.23 16 16 O -0.54 -7.79 15.98 5.56 0.09 -7.71 16 17 C -0.14 -0.83 5.70 -27.88 -0.16 -0.99 16 18 C -0.10 -0.73 4.87 -26.73 -0.13 -0.86 16 19 C 0.06 0.32 4.75 37.16 0.18 0.50 16 20 O -0.31 -2.55 10.15 -19.46 -0.20 -2.75 16 21 C 0.08 0.67 6.71 -39.07 -0.26 0.41 16 22 C -0.11 -0.75 10.13 -39.13 -0.40 -1.15 16 23 C -0.13 -0.72 10.11 -39.46 -0.40 -1.12 16 24 C 0.06 0.37 11.18 -17.53 -0.20 0.18 16 25 N -0.45 -4.02 10.36 -13.12 -0.14 -4.15 16 26 C 0.02 0.12 10.22 -17.38 -0.18 -0.06 16 27 C 0.14 2.69 8.10 -8.52 -0.07 2.62 16 28 H 0.26 8.17 8.73 -40.82 -0.36 7.82 16 29 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 30 H 0.06 1.13 4.67 -51.93 -0.24 0.89 16 31 H 0.36 3.89 7.21 45.56 0.33 4.22 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.12 7.89 -51.93 -0.41 0.71 16 34 H 0.40 2.94 6.95 -40.82 -0.28 2.66 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.07 0.31 7.68 -51.93 -0.40 -0.09 16 40 H 0.07 0.29 7.68 -51.93 -0.40 -0.11 16 41 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 43 H 0.16 0.63 8.06 -52.49 -0.42 0.20 16 44 H 0.16 0.93 6.32 -52.48 -0.33 0.60 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -38.49 379.99 -7.70 -46.19 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.00 Total: 2.62 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -2.18 Total: -1.19 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.38 Total: -56.34 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.59 Total: -19.25 kcal Atomic # 14 Polarization: 26.52 SS G_CDS: -4.27 Total: 22.25 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.49 -7.70 -46.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699922953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.863 kcal (2) G-P(sol) polarization free energy of solvation -38.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds