Wall clock time and date at job start Tue Mar 31 2020 18:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48502 * 109.46980 * 355.31954 * 3 2 1 5 5 H 1.48501 * 109.46832 * 115.31660 * 3 2 1 6 6 H 1.48495 * 109.47214 * 235.31903 * 3 2 1 7 7 C 1.38808 * 119.99758 * 180.27956 * 2 1 3 8 8 H 1.08004 * 120.00239 * 352.36434 * 7 2 1 9 9 N 1.36944 * 119.99887 * 172.36849 * 7 2 1 10 10 C 1.47058 * 136.05788 * 6.52764 * 9 7 2 11 11 C 1.53749 * 87.89054 * 152.96179 * 10 9 7 12 12 O 1.42899 * 114.39541 * 272.67544 * 11 10 9 13 13 C 1.53007 * 114.08694 * 139.77849 * 11 10 9 14 14 N 1.46494 * 109.46928 * 86.56529 * 13 11 10 15 15 C 1.34781 * 119.99862 * 179.97438 * 14 13 11 16 16 O 1.21280 * 119.99746 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00044 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47009 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.46946 * 179.97438 * 18 17 15 20 20 O 1.42908 * 109.46950 * 179.97438 * 19 18 17 21 21 C 1.35912 * 116.99551 * 180.02562 * 20 19 18 22 22 C 1.39146 * 120.46668 * 179.72321 * 21 20 19 23 23 C 1.38535 * 118.37030 * 179.71068 * 22 21 20 24 24 C 1.38260 * 119.22272 * 0.58015 * 23 22 21 25 25 N 1.31854 * 120.88390 * 359.68073 * 24 23 22 26 26 C 1.31837 * 121.77746 * 0.02562 * 25 24 23 27 27 C 1.47066 * 136.05683 * 186.89762 * 9 7 2 28 28 H 0.96999 * 119.99710 * 185.10483 * 1 2 3 29 29 H 1.09001 * 113.46851 * 267.69866 * 10 9 7 30 30 H 1.09001 * 113.47037 * 38.13172 * 10 9 7 31 31 H 0.96703 * 113.99848 * 273.58159 * 12 11 10 32 32 H 1.09001 * 109.46510 * 206.56068 * 13 11 10 33 33 H 1.08998 * 109.47097 * 326.55971 * 13 11 10 34 34 H 0.96997 * 120.00500 * 359.97438 * 14 13 11 35 35 H 1.09004 * 109.46965 * 299.99944 * 17 15 14 36 36 H 1.08998 * 109.47319 * 60.00120 * 17 15 14 37 37 H 1.09001 * 109.47194 * 300.00184 * 18 17 15 38 38 H 1.08998 * 109.47177 * 59.99794 * 18 17 15 39 39 H 1.08989 * 109.47588 * 299.99791 * 19 18 17 40 40 H 1.09000 * 109.46893 * 60.00314 * 19 18 17 41 41 H 1.07996 * 120.81256 * 359.97438 * 22 21 20 42 42 H 1.07997 * 120.38847 * 180.26173 * 23 22 21 43 43 H 1.07995 * 119.55774 * 179.70181 * 24 23 22 44 44 H 1.08010 * 119.65248 * 179.97438 * 26 25 24 45 45 H 1.09007 * 113.46852 * 321.86298 * 27 9 7 46 46 H 1.08998 * 113.47074 * 92.24182 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2893 2.7441 -0.1142 5 1 3.0162 1.7470 1.2656 6 1 3.1876 1.6481 -1.1513 7 6 2.0102 -1.2021 -0.0059 8 1 1.4774 -2.1339 0.1139 9 7 3.3705 -1.2066 -0.1634 10 6 4.4319 -0.1910 -0.2326 11 6 5.4053 -1.2538 0.3029 12 8 5.4631 -1.3365 1.7283 13 6 6.7836 -1.2293 -0.3611 14 7 7.6440 -0.2695 0.3351 15 6 8.9127 -0.0789 -0.0777 16 8 9.3420 -0.7017 -1.0258 17 6 9.7977 0.9089 0.6380 18 6 11.1759 0.9333 -0.0259 19 6 12.0741 1.9366 0.7004 20 8 13.3616 1.9589 0.0807 21 6 14.2859 2.8038 0.6088 22 6 15.5647 2.8795 0.0655 23 6 16.4706 3.7598 0.6342 24 6 16.0816 4.5195 1.7219 25 7 14.8633 4.4198 2.2162 26 6 13.9699 3.5987 1.7007 27 6 4.4122 -2.2289 -0.3444 28 1 -0.4850 -0.8367 0.0747 29 1 4.6580 0.1320 -1.2487 30 1 4.2791 0.6438 0.4515 31 1 6.0897 -0.7211 2.1329 32 1 7.2300 -2.2223 -0.3082 33 1 6.6788 -0.9331 -1.4048 34 1 7.3006 0.2288 1.0931 35 1 9.3513 1.9019 0.5844 36 1 9.9020 0.6133 1.6819 37 1 11.6224 -0.0597 0.0273 38 1 11.0712 1.2291 -1.0697 39 1 11.6275 2.9293 0.6468 40 1 12.1789 1.6411 1.7443 41 1 15.8427 2.2699 -0.7816 42 1 17.4705 3.8479 0.2358 43 1 16.7850 5.2040 2.1726 44 1 12.9818 3.5442 2.1333 45 1 4.2426 -3.1304 0.2445 46 1 4.6324 -2.4440 -1.3900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699922953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:53 Heat of formation + Delta-G solvation = -52.863733 kcal Electronic energy + Delta-G solvation = -27401.663718 eV Core-core repulsion = 23292.917640 eV Total energy + Delta-G solvation = -4108.746078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.57081 -41.35906 -40.32805 -39.17123 -36.79837 -35.29254 -34.93264 -34.43412 -33.23901 -31.29352 -30.70903 -28.80244 -27.17300 -27.07322 -24.86752 -24.07177 -23.30333 -22.49555 -21.50392 -21.16570 -19.74705 -19.36005 -18.61236 -17.89882 -17.56563 -17.50958 -17.43973 -17.14770 -16.54707 -16.44743 -15.86418 -15.69992 -15.35203 -15.25603 -15.13586 -14.91608 -14.63895 -14.43344 -14.11411 -13.97677 -13.91810 -13.54324 -13.30910 -13.23738 -12.97919 -12.83552 -12.49064 -12.38368 -12.30445 -11.90133 -11.77518 -11.67360 -11.33877 -11.03471 -10.93051 -10.67858 -10.62525 -10.43455 -10.13928 -9.45146 -9.22533 -8.68283 -5.48922 0.15146 0.29773 1.34728 1.47793 1.65678 1.67402 1.87475 2.30661 2.54178 2.82805 2.87532 2.95891 3.17614 3.30227 3.55712 3.64794 3.73200 3.77329 3.93948 3.94296 4.05976 4.10540 4.25071 4.31554 4.38453 4.46603 4.48718 4.55416 4.56586 4.64232 4.65179 4.70133 4.77589 4.80620 5.00682 5.02360 5.07897 5.15192 5.15861 5.22463 5.34519 5.59692 5.92007 6.26129 6.47338 6.67021 6.77396 6.97553 7.23720 7.29566 8.22564 8.87476 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023158 B = 0.001715 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.811548 B =16324.983545 C =17049.588387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.089 4.089 3 Si 1.114 2.886 4 H -0.306 1.306 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.291 4.291 8 H 0.046 0.954 9 N -0.654 5.654 10 C 0.069 3.931 11 C 0.107 3.893 12 O -0.536 6.536 13 C 0.120 3.880 14 N -0.720 5.720 15 C 0.513 3.487 16 O -0.584 6.584 17 C -0.129 4.129 18 C -0.099 4.099 19 C 0.054 3.946 20 O -0.326 6.326 21 C 0.069 3.931 22 C -0.124 4.124 23 C -0.125 4.125 24 C 0.046 3.954 25 N -0.481 5.481 26 C 0.004 3.996 27 C 0.126 3.874 28 H 0.244 0.756 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.387 0.613 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.414 0.586 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.153 0.847 42 H 0.173 0.827 43 H 0.180 0.820 44 H 0.173 0.827 45 H 0.048 0.952 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.534 8.628 3.833 37.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.280 4.280 3 Si 0.939 3.061 4 H -0.235 1.235 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.419 4.419 8 H 0.063 0.937 9 N -0.382 5.382 10 C -0.056 4.056 11 C 0.064 3.936 12 O -0.343 6.343 13 C -0.006 4.006 14 N -0.375 5.375 15 C 0.302 3.698 16 O -0.464 6.464 17 C -0.169 4.169 18 C -0.137 4.137 19 C -0.020 4.020 20 O -0.239 6.239 21 C 0.021 3.979 22 C -0.151 4.151 23 C -0.144 4.144 24 C -0.112 4.112 25 N -0.190 5.190 26 C -0.154 4.154 27 C 0.001 3.999 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.238 0.762 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.251 0.749 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.171 0.829 42 H 0.190 0.810 43 H 0.197 0.803 44 H 0.190 0.810 45 H 0.066 0.934 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 35.687 9.673 3.583 37.148 hybrid contribution -0.556 -2.130 -0.281 2.219 sum 35.131 7.543 3.302 36.083 Atomic orbital electron populations 1.71033 1.06705 1.28530 1.55322 1.27231 0.96497 1.04878 0.99400 0.83229 0.73374 0.71305 0.78220 1.23453 1.19402 1.18115 1.19969 0.81008 0.94427 1.46460 0.93654 1.45769 1.01457 1.05108 1.85889 1.23766 0.87760 0.94422 0.99659 1.22695 0.91716 0.97249 0.81940 1.86652 1.66576 1.63858 1.17260 1.21609 0.87799 0.94301 0.96884 1.45855 1.12454 1.43569 1.35573 1.21220 0.81931 0.83091 0.83588 1.90728 1.74695 1.50588 1.30374 1.21570 0.93118 1.00268 1.01899 1.21131 0.93221 0.99335 1.00054 1.23039 0.80215 1.01072 0.97666 1.86062 1.22868 1.58571 1.56371 1.20260 0.90952 0.92085 0.94586 1.21342 0.90836 1.00882 1.02022 1.22382 1.01528 0.94508 0.95965 1.23184 0.93068 0.99752 0.95154 1.67553 1.03463 1.18029 1.29993 1.23198 1.01024 0.95730 0.95410 1.22646 0.85325 0.93392 0.98580 0.94664 0.91457 0.92616 0.76238 0.90169 0.90107 0.74882 0.85390 0.85061 0.91621 0.91808 0.89815 0.89660 0.82945 0.80950 0.80286 0.80995 0.93405 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.61 13.70 21.65 0.30 -63.31 16 2 C -0.09 -5.39 5.50 84.86 0.47 -4.92 16 3 Si 1.11 52.41 25.13 68.60 1.72 54.13 16 4 H -0.31 -14.90 7.11 99.48 0.71 -14.19 16 5 H -0.27 -11.28 6.64 99.48 0.66 -10.62 16 6 H -0.26 -10.60 6.13 99.48 0.61 -9.99 16 7 C -0.29 -17.32 11.08 84.03 0.93 -16.39 16 8 H 0.05 2.94 8.05 -2.91 -0.02 2.92 16 9 N -0.65 -31.49 3.69 -738.49 -2.73 -34.21 16 10 C 0.07 2.55 5.13 83.26 0.43 2.98 16 11 C 0.11 3.15 1.74 -10.37 -0.02 3.13 16 12 O -0.54 -15.45 13.56 -148.98 -2.02 -17.47 16 13 C 0.12 2.68 5.43 86.38 0.47 3.15 16 14 N -0.72 -11.48 5.34 -463.06 -2.47 -13.95 16 15 C 0.51 8.99 7.83 87.66 0.69 9.68 16 16 O -0.58 -15.99 15.98 -3.03 -0.05 -16.04 16 17 C -0.13 -1.03 5.70 29.85 0.17 -0.86 16 18 C -0.10 -1.21 4.87 30.59 0.15 -1.06 16 19 C 0.05 0.51 4.75 71.98 0.34 0.85 16 20 O -0.33 -5.06 10.15 -92.56 -0.94 -6.00 16 21 C 0.07 1.02 6.71 22.60 0.15 1.18 16 22 C -0.12 -1.52 10.13 22.56 0.23 -1.29 16 23 C -0.12 -1.10 10.11 22.35 0.23 -0.88 16 24 C 0.05 0.53 11.18 84.69 0.95 1.47 16 25 N -0.48 -7.92 10.36 -195.44 -2.02 -9.95 16 26 C 0.00 0.05 10.22 84.80 0.87 0.92 16 27 C 0.13 4.73 8.10 83.17 0.67 5.40 16 28 H 0.24 16.16 8.73 -92.71 -0.81 15.35 16 29 H 0.07 2.35 7.50 -2.39 -0.02 2.33 16 30 H 0.06 2.07 4.67 -2.39 -0.01 2.06 16 31 H 0.39 6.59 7.21 -74.06 -0.53 6.06 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 1.92 7.89 -2.39 -0.02 1.90 16 34 H 0.41 4.04 6.95 -92.71 -0.64 3.39 16 35 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 38 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 39 H 0.08 0.51 7.68 -2.39 -0.02 0.49 16 40 H 0.09 0.48 7.68 -2.39 -0.02 0.46 16 41 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.17 0.34 8.06 -2.91 -0.02 0.31 16 43 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 44 H 0.17 1.69 6.32 -2.91 -0.02 1.67 16 45 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 46 H 0.08 2.59 8.10 -2.39 -0.02 2.57 16 Total: -1.00 -88.14 379.99 -1.84 -89.99 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -0.34 Total: 13.46 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 6.72 Total: 3.35 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -6.93 Total: -121.42 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -3.01 Total: -39.51 kcal Atomic # 14 Polarization: 52.41 SS G_CDS: 1.72 Total: 54.13 kcal Total: -88.14 -1.84 -89.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699922953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.122 kcal (2) G-P(sol) polarization free energy of solvation -88.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds