Wall clock time and date at job start Tue Mar 31 2020 18:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99962 * 2 1 4 4 H 1.48503 * 109.47209 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47024 * 299.99648 * 3 2 1 6 6 H 1.48502 * 109.46929 * 60.00005 * 3 2 1 7 7 C 1.38813 * 119.99601 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99745 * 190.73065 * 7 2 1 9 9 N 1.36935 * 120.00699 * 10.73046 * 7 2 1 10 10 C 1.47155 * 120.98058 * 31.17845 * 9 7 2 11 11 C 1.53292 * 108.38220 * 129.48869 * 10 9 7 12 12 O 1.42961 * 109.22464 * 52.30700 * 11 10 9 13 13 C 1.42969 * 114.16116 * 297.41612 * 12 11 10 14 14 C 1.47152 * 120.98445 * 211.20755 * 9 7 2 15 15 H 1.08995 * 109.68509 * 110.75001 * 14 9 7 16 16 C 1.53004 * 109.68078 * 350.23025 * 14 9 7 17 17 N 1.46500 * 109.46995 * 60.61096 * 16 14 9 18 18 C 1.34773 * 120.00278 * 179.97438 * 17 16 14 19 19 O 1.21283 * 119.99633 * 0.02562 * 18 17 16 20 20 C 1.50692 * 120.00464 * 180.02562 * 18 17 16 21 21 C 1.52995 * 109.47304 * 180.02562 * 20 18 17 22 22 C 1.50706 * 109.47303 * 179.97438 * 21 20 18 23 23 C 1.38825 * 120.35739 * 89.99558 * 22 21 20 24 24 C 1.38372 * 118.48741 * 179.97438 * 23 22 21 25 25 C 1.38927 * 119.10991 * 0.25763 * 24 23 22 26 26 O 1.35679 * 119.68083 * 179.74441 * 25 24 23 27 27 N 1.32244 * 120.62818 * 359.50032 * 25 24 23 28 28 C 1.31960 * 121.65045 * 0.48344 * 27 25 24 29 29 H 0.96991 * 119.99889 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.68464 * 249.21773 * 10 9 7 31 31 H 1.09006 * 109.67993 * 9.76819 * 10 9 7 32 32 H 1.09001 * 109.50882 * 172.22612 * 11 10 9 33 33 H 1.08996 * 109.51528 * 292.32753 * 11 10 9 34 34 H 1.08997 * 109.51222 * 302.65339 * 13 12 11 35 35 H 1.09000 * 109.50813 * 182.50430 * 13 12 11 36 36 H 1.09001 * 109.47172 * 300.61060 * 16 14 9 37 37 H 1.08995 * 109.47140 * 180.61344 * 16 14 9 38 38 H 0.97005 * 119.99767 * 359.97438 * 17 16 14 39 39 H 1.09001 * 109.47371 * 59.99993 * 20 18 17 40 40 H 1.09003 * 109.47234 * 300.00016 * 20 18 17 41 41 H 1.08997 * 109.47458 * 60.00249 * 21 20 18 42 42 H 1.08998 * 109.47141 * 299.99416 * 21 20 18 43 43 H 1.07997 * 120.75423 * 0.02562 * 23 22 21 44 44 H 1.07996 * 120.44898 * 179.97438 * 24 23 22 45 45 H 0.96694 * 113.99892 * 90.00374 * 26 25 24 46 46 H 1.07997 * 119.58299 * 179.75367 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0761 -1.2103 0.1747 9 7 1.3436 -2.3779 -0.2197 10 6 0.1535 -2.4234 -1.0841 11 6 0.3402 -3.5516 -2.1048 12 8 0.6709 -4.7598 -1.4158 13 6 1.9024 -4.7023 -0.6918 14 6 1.7956 -3.6329 0.4014 15 1 1.0757 -3.9493 1.1561 16 6 3.1646 -3.4223 1.0515 17 7 3.0597 -2.3918 2.0876 18 6 4.1485 -2.0379 2.7987 19 8 5.2152 -2.5722 2.5806 20 6 4.0406 -0.9784 3.8648 21 6 5.4094 -0.7676 4.5148 22 6 5.3016 0.2924 5.5806 23 6 4.9955 -0.0566 6.8889 24 6 4.9067 0.9479 7.8365 25 6 5.1204 2.2644 7.4478 26 8 5.0311 3.2590 8.3663 27 7 5.4147 2.5569 6.1921 28 6 5.5068 1.6210 5.2664 29 1 -0.4849 0.8400 -0.0004 30 1 -0.7322 -2.6182 -0.4794 31 1 0.0412 -1.4722 -1.6046 32 1 -0.5845 -3.6931 -2.6643 33 1 1.1453 -3.2914 -2.7920 34 1 2.7138 -4.4466 -1.3733 35 1 2.1016 -5.6715 -0.2347 36 1 3.8814 -3.1046 0.2943 37 1 3.5010 -4.3565 1.5009 38 1 2.2066 -1.9642 2.2617 39 1 3.3236 -1.2963 4.6218 40 1 3.7043 -0.0439 3.4157 41 1 6.1261 -0.4494 3.7577 42 1 5.7461 -1.7019 4.9640 43 1 4.8311 -1.0887 7.1611 44 1 4.6700 0.7121 8.8634 45 1 5.8661 3.4602 8.8105 46 1 5.7451 1.8978 4.2501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700119780.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:39 Heat of formation + Delta-G solvation = -63.195290 kcal Electronic energy + Delta-G solvation = -29063.040677 eV Core-core repulsion = 24953.846590 eV Total energy + Delta-G solvation = -4109.194087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.67331 -39.39517 -38.37859 -37.44425 -35.41754 -34.12175 -33.58250 -32.28324 -31.60045 -30.51305 -29.40012 -27.25996 -25.92066 -24.24429 -23.89686 -23.48909 -21.99175 -21.43066 -19.88068 -19.52951 -19.03439 -17.17805 -17.11685 -16.43652 -16.16155 -15.96677 -15.76305 -15.13800 -14.97766 -14.91204 -14.57234 -14.42454 -14.07730 -13.85031 -13.50388 -13.40478 -13.23764 -13.10792 -12.91603 -12.57909 -12.12372 -12.05534 -11.82103 -11.70753 -11.55714 -11.11550 -10.98022 -10.93335 -10.76937 -10.44397 -10.27248 -10.09393 -10.05872 -9.70242 -9.60404 -9.47050 -9.03546 -8.86920 -8.71875 -8.30580 -6.77446 -5.95043 -3.45161 0.78360 1.03124 3.12748 3.24194 3.28553 3.35366 3.35701 3.56818 3.79762 4.30045 4.46566 4.50231 4.64446 4.75257 4.79359 5.03587 5.10580 5.13570 5.22670 5.28079 5.44889 5.47850 5.56502 5.67515 5.72302 5.77296 5.82660 5.85311 5.99058 6.06604 6.10725 6.12545 6.18779 6.20584 6.29933 6.35690 6.49001 6.72126 7.03599 7.07311 7.24894 7.45301 7.66186 7.73804 7.83298 8.16933 8.25075 8.78010 9.01191 9.61644 10.20953 11.11360 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.002973 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.324248 B = 9415.651221 C =10660.235621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.010 3.990 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.256 4.256 8 H 0.075 0.925 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.393 6.393 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.136 3.864 17 N -0.694 5.694 18 C 0.509 3.491 19 O -0.566 6.566 20 C -0.137 4.137 21 C -0.058 4.058 22 C -0.137 4.137 23 C -0.058 4.058 24 C -0.184 4.184 25 C 0.298 3.702 26 O -0.484 6.484 27 N -0.501 5.501 28 C 0.128 3.872 29 H 0.255 0.745 30 H 0.029 0.971 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.416 0.584 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.398 0.602 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.861 -2.225 11.232 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.385 4.385 8 H 0.092 0.908 9 N -0.317 5.317 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.058 0.942 16 C 0.012 3.988 17 N -0.345 5.345 18 C 0.295 3.705 19 O -0.446 6.446 20 C -0.177 4.177 21 C -0.096 4.096 22 C -0.139 4.139 23 C -0.083 4.083 24 C -0.205 4.205 25 C 0.120 3.880 26 O -0.291 6.291 27 N -0.219 5.219 28 C -0.029 4.029 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.254 0.746 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.255 0.745 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.901 -1.702 10.744 13.444 hybrid contribution 0.266 0.748 0.419 0.897 sum 8.166 -0.954 11.163 13.864 Atomic orbital electron populations 1.69982 1.05204 1.25621 1.53449 1.25149 0.95294 0.98200 1.00339 0.86368 0.79603 0.84108 0.77724 1.20012 1.21399 1.21339 1.19282 0.91361 0.83246 1.44646 0.90782 1.44096 1.31981 1.02967 1.52663 1.21417 0.88881 0.96805 0.91073 1.23349 0.99146 0.86548 0.95265 1.87804 1.40278 1.36150 1.66895 1.22867 0.86684 0.98685 0.94080 1.21431 0.93744 0.89319 0.93756 0.94164 1.21148 0.97459 0.90098 0.90136 1.46043 1.12627 1.40131 1.35739 1.20425 0.84081 0.83420 0.82621 1.90640 1.28196 1.56232 1.69572 1.21629 0.98578 0.99711 0.97786 1.20249 0.97059 0.96746 0.95571 1.21028 1.00745 0.96398 0.95706 1.21464 0.94947 0.99984 0.91931 1.22091 1.04428 0.92330 1.01616 1.19209 0.95926 0.85997 0.86899 1.84802 1.36854 1.54861 1.52543 1.67177 1.14005 1.38874 1.01874 1.22533 0.94572 0.87690 0.98111 0.93454 0.95272 0.88965 0.90245 0.94112 0.93504 0.89942 0.91551 0.92402 0.74633 0.89108 0.88579 0.89634 0.89862 0.84166 0.84282 0.74545 0.82098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.75 11.14 55.49 0.62 -23.13 16 2 C 0.01 0.25 5.06 -17.43 -0.09 0.16 16 3 Si 0.89 20.27 29.57 -169.99 -5.03 15.24 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.26 -6.13 7.06 -15.06 -0.11 -6.24 16 8 H 0.07 1.80 5.81 -52.48 -0.30 1.50 16 9 N -0.59 -13.23 3.03 -164.30 -0.50 -13.73 16 10 C 0.14 3.20 5.38 -3.53 -0.02 3.18 16 11 C 0.03 0.66 6.98 37.31 0.26 0.92 16 12 O -0.39 -7.51 10.74 -35.23 -0.38 -7.89 16 13 C 0.06 0.96 6.29 37.31 0.23 1.20 16 14 C 0.12 2.36 3.21 -67.42 -0.22 2.14 16 15 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 16 C 0.14 2.41 4.45 -4.04 -0.02 2.39 16 17 N -0.69 -12.23 3.77 -60.30 -0.23 -12.46 16 18 C 0.51 8.53 7.83 -10.99 -0.09 8.45 16 19 O -0.57 -10.91 15.98 5.55 0.09 -10.82 16 20 C -0.14 -1.82 5.68 -27.89 -0.16 -1.97 16 21 C -0.06 -0.67 4.66 -27.88 -0.13 -0.80 16 22 C -0.14 -1.51 5.15 -104.47 -0.54 -2.05 16 23 C -0.06 -0.55 9.85 -39.31 -0.39 -0.94 16 24 C -0.18 -1.79 10.04 -39.28 -0.39 -2.18 16 25 C 0.30 3.53 7.75 -17.12 -0.13 3.40 16 26 O -0.48 -4.96 13.56 -18.74 -0.25 -5.21 16 27 N -0.50 -6.82 10.39 -13.33 -0.14 -6.96 16 28 C 0.13 1.57 10.85 -17.57 -0.19 1.38 16 29 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 2.27 6.33 -51.93 -0.33 1.94 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.29 7.57 -51.93 -0.39 0.90 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.42 7.71 7.31 -40.82 -0.30 7.41 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 42 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 43 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.40 1.93 9.06 45.56 0.41 2.34 16 46 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -31.33 377.66 -8.05 -39.38 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.96 Total: 10.87 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -1.97 Total: 9.03 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.25 Total: -56.28 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.54 Total: -23.92 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.33 -8.05 -39.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700119780.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.819 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds