Wall clock time and date at job start Tue Mar 31 2020 18:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99962 * 2 1 4 4 H 1.48503 * 109.47209 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47024 * 299.99648 * 3 2 1 6 6 H 1.48502 * 109.46929 * 60.00005 * 3 2 1 7 7 C 1.38813 * 119.99601 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99745 * 190.73065 * 7 2 1 9 9 N 1.36935 * 120.00699 * 10.73046 * 7 2 1 10 10 C 1.47155 * 120.98058 * 31.17845 * 9 7 2 11 11 C 1.53292 * 108.38220 * 129.48869 * 10 9 7 12 12 O 1.42961 * 109.22464 * 52.30700 * 11 10 9 13 13 C 1.42969 * 114.16116 * 297.41612 * 12 11 10 14 14 C 1.47152 * 120.98445 * 211.20755 * 9 7 2 15 15 H 1.08995 * 109.68509 * 110.75001 * 14 9 7 16 16 C 1.53004 * 109.68078 * 350.23025 * 14 9 7 17 17 N 1.46500 * 109.46995 * 60.61096 * 16 14 9 18 18 C 1.34773 * 120.00278 * 179.97438 * 17 16 14 19 19 O 1.21283 * 119.99633 * 0.02562 * 18 17 16 20 20 C 1.50692 * 120.00464 * 180.02562 * 18 17 16 21 21 C 1.52995 * 109.47304 * 180.02562 * 20 18 17 22 22 C 1.50706 * 109.47303 * 179.97438 * 21 20 18 23 23 C 1.38825 * 120.35739 * 89.99558 * 22 21 20 24 24 C 1.38372 * 118.48741 * 179.97438 * 23 22 21 25 25 C 1.38927 * 119.10991 * 0.25763 * 24 23 22 26 26 O 1.35679 * 119.68083 * 179.74441 * 25 24 23 27 27 N 1.32244 * 120.62818 * 359.50032 * 25 24 23 28 28 C 1.31960 * 121.65045 * 0.48344 * 27 25 24 29 29 H 0.96991 * 119.99889 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.68464 * 249.21773 * 10 9 7 31 31 H 1.09006 * 109.67993 * 9.76819 * 10 9 7 32 32 H 1.09001 * 109.50882 * 172.22612 * 11 10 9 33 33 H 1.08996 * 109.51528 * 292.32753 * 11 10 9 34 34 H 1.08997 * 109.51222 * 302.65339 * 13 12 11 35 35 H 1.09000 * 109.50813 * 182.50430 * 13 12 11 36 36 H 1.09001 * 109.47172 * 300.61060 * 16 14 9 37 37 H 1.08995 * 109.47140 * 180.61344 * 16 14 9 38 38 H 0.97005 * 119.99767 * 359.97438 * 17 16 14 39 39 H 1.09001 * 109.47371 * 59.99993 * 20 18 17 40 40 H 1.09003 * 109.47234 * 300.00016 * 20 18 17 41 41 H 1.08997 * 109.47458 * 60.00249 * 21 20 18 42 42 H 1.08998 * 109.47141 * 299.99416 * 21 20 18 43 43 H 1.07997 * 120.75423 * 0.02562 * 23 22 21 44 44 H 1.07996 * 120.44898 * 179.97438 * 24 23 22 45 45 H 0.96694 * 113.99892 * 90.00374 * 26 25 24 46 46 H 1.07997 * 119.58299 * 179.75367 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0761 -1.2103 0.1747 9 7 1.3436 -2.3779 -0.2197 10 6 0.1535 -2.4234 -1.0841 11 6 0.3402 -3.5516 -2.1048 12 8 0.6709 -4.7598 -1.4158 13 6 1.9024 -4.7023 -0.6918 14 6 1.7956 -3.6329 0.4014 15 1 1.0757 -3.9493 1.1561 16 6 3.1646 -3.4223 1.0515 17 7 3.0597 -2.3918 2.0876 18 6 4.1485 -2.0379 2.7987 19 8 5.2152 -2.5722 2.5806 20 6 4.0406 -0.9784 3.8648 21 6 5.4094 -0.7676 4.5148 22 6 5.3016 0.2924 5.5806 23 6 4.9955 -0.0566 6.8889 24 6 4.9067 0.9479 7.8365 25 6 5.1204 2.2644 7.4478 26 8 5.0311 3.2590 8.3663 27 7 5.4147 2.5569 6.1921 28 6 5.5068 1.6210 5.2664 29 1 -0.4849 0.8400 -0.0004 30 1 -0.7322 -2.6182 -0.4794 31 1 0.0412 -1.4722 -1.6046 32 1 -0.5845 -3.6931 -2.6643 33 1 1.1453 -3.2914 -2.7920 34 1 2.7138 -4.4466 -1.3733 35 1 2.1016 -5.6715 -0.2347 36 1 3.8814 -3.1046 0.2943 37 1 3.5010 -4.3565 1.5009 38 1 2.2066 -1.9642 2.2617 39 1 3.3236 -1.2963 4.6218 40 1 3.7043 -0.0439 3.4157 41 1 6.1261 -0.4494 3.7577 42 1 5.7461 -1.7019 4.9640 43 1 4.8311 -1.0887 7.1611 44 1 4.6700 0.7121 8.8634 45 1 5.8661 3.4602 8.8105 46 1 5.7451 1.8978 4.2501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700119780.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:38 Heat of formation + Delta-G solvation = -87.516954 kcal Electronic energy + Delta-G solvation = -29064.095344 eV Core-core repulsion = 24953.846590 eV Total energy + Delta-G solvation = -4110.248754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51863 -40.79292 -39.86745 -38.25488 -36.95054 -35.31694 -35.03474 -33.32515 -33.02953 -32.14597 -30.41050 -28.97917 -27.23491 -25.41990 -25.17640 -24.70968 -23.36346 -22.53247 -21.42783 -20.96397 -19.80511 -18.76519 -17.98559 -17.80372 -17.59344 -17.21967 -16.98514 -16.36763 -16.35198 -16.21478 -16.02519 -15.69393 -15.40645 -15.23180 -14.93445 -14.58202 -14.37163 -14.25330 -14.18867 -13.99814 -13.43172 -13.13656 -12.99745 -12.92635 -12.82807 -12.73265 -12.57998 -12.44400 -12.11526 -12.00320 -11.98548 -11.84901 -11.29620 -10.95595 -10.83144 -10.60018 -10.55122 -10.41374 -9.79114 -9.75468 -8.61228 -7.86518 -5.37340 -0.03306 0.23834 1.39809 1.47996 1.52729 1.79190 2.37786 2.46579 2.56700 2.81559 3.04848 3.30195 3.45634 3.66043 3.75425 3.91353 4.02940 4.03774 4.07065 4.20368 4.26083 4.29299 4.37997 4.48227 4.51366 4.61475 4.65376 4.66066 4.69576 4.74604 4.80300 4.93409 5.00754 5.02271 5.13214 5.17577 5.31924 5.33396 5.58666 5.61087 5.67056 5.71745 6.30565 6.38246 6.62278 6.76514 6.92249 7.11521 7.40070 7.77627 8.33908 9.17979 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.002973 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.324248 B = 9415.651221 C =10660.235621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.031 4.031 3 Si 0.940 3.060 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.290 1.290 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.605 5.605 10 C 0.149 3.851 11 C 0.046 3.954 12 O -0.398 6.398 13 C 0.057 3.943 14 C 0.125 3.875 15 H 0.037 0.963 16 C 0.142 3.858 17 N -0.700 5.700 18 C 0.508 3.492 19 O -0.590 6.590 20 C -0.131 4.131 21 C -0.047 4.047 22 C -0.139 4.139 23 C -0.052 4.052 24 C -0.177 4.177 25 C 0.285 3.715 26 O -0.495 6.495 27 N -0.536 5.536 28 C 0.110 3.890 29 H 0.249 0.751 30 H 0.006 0.994 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.118 0.882 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.411 0.589 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.170 0.830 44 H 0.168 0.832 45 H 0.418 0.582 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.557 -3.746 12.518 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.228 4.228 3 Si 0.770 3.230 4 H -0.196 1.196 5 H -0.225 1.225 6 H -0.217 1.217 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.331 5.331 10 C 0.023 3.977 11 C -0.031 4.031 12 O -0.317 6.317 13 C -0.022 4.022 14 C 0.019 3.981 15 H 0.055 0.945 16 C 0.018 3.982 17 N -0.350 5.350 18 C 0.296 3.704 19 O -0.473 6.473 20 C -0.171 4.171 21 C -0.086 4.086 22 C -0.141 4.141 23 C -0.077 4.077 24 C -0.198 4.198 25 C 0.107 3.893 26 O -0.305 6.305 27 N -0.255 5.255 28 C -0.046 4.046 29 H 0.058 0.942 30 H 0.024 0.976 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.136 0.864 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.248 0.752 39 H 0.132 0.868 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.187 0.813 44 H 0.185 0.815 45 H 0.279 0.721 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.632 -3.239 12.041 15.165 hybrid contribution 0.087 1.185 0.074 1.191 sum 8.718 -2.054 12.115 15.066 Atomic orbital electron populations 1.70099 1.06173 1.25458 1.55558 1.25583 0.95671 1.00165 1.01333 0.85623 0.78841 0.81712 0.76859 1.19640 1.22462 1.21721 1.19337 0.91177 0.83868 1.42467 0.91065 1.44304 1.31746 1.03791 1.53274 1.21235 0.88195 0.96901 0.91363 1.23204 1.00467 0.85296 0.94177 1.87806 1.41131 1.35740 1.66997 1.23005 0.86041 0.99735 0.93403 1.21562 0.94067 0.88202 0.94250 0.94513 1.21081 0.96131 0.91107 0.89906 1.46108 1.12704 1.40265 1.35908 1.20967 0.83240 0.83493 0.82739 1.90626 1.28926 1.57300 1.70403 1.21641 1.00239 0.97973 0.97240 1.20125 0.95737 0.97279 0.95429 1.20936 1.01349 0.95502 0.96318 1.21812 0.93463 1.01426 0.91033 1.22361 1.03181 0.91279 1.02994 1.19534 0.95960 0.87165 0.86676 1.84747 1.38692 1.54771 1.52323 1.67132 1.15524 1.39896 1.02997 1.22639 0.95382 0.88347 0.98215 0.94175 0.97568 0.91688 0.87886 0.93857 0.93317 0.86430 0.93352 0.90163 0.75199 0.86838 0.89338 0.90728 0.88983 0.81286 0.81495 0.72136 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.99 11.14 21.65 0.24 -49.75 16 2 C -0.03 -1.56 5.06 84.86 0.43 -1.13 16 3 Si 0.94 42.26 29.57 68.60 2.03 44.29 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.24 -11.42 7.06 84.03 0.59 -10.82 16 8 H 0.07 3.45 5.81 -2.91 -0.02 3.43 16 9 N -0.61 -26.91 3.03 -673.72 -2.04 -28.95 16 10 C 0.15 6.66 5.38 86.35 0.46 7.12 16 11 C 0.05 1.69 6.98 72.08 0.50 2.19 16 12 O -0.40 -14.31 10.74 -148.98 -1.60 -15.91 16 13 C 0.06 1.81 6.29 72.08 0.45 2.26 16 14 C 0.13 4.57 3.21 44.97 0.14 4.71 16 15 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 16 C 0.14 4.83 4.45 86.38 0.38 5.21 16 17 N -0.70 -23.94 3.77 -463.07 -1.75 -25.69 16 18 C 0.51 16.44 7.83 87.65 0.69 17.12 16 19 O -0.59 -22.06 15.98 -3.04 -0.05 -22.11 16 20 C -0.13 -3.29 5.68 29.84 0.17 -3.12 16 21 C -0.05 -1.03 4.66 29.85 0.14 -0.89 16 22 C -0.14 -2.86 5.15 -19.77 -0.10 -2.97 16 23 C -0.05 -0.85 9.85 22.44 0.22 -0.63 16 24 C -0.18 -2.99 10.04 22.47 0.23 -2.77 16 25 C 0.29 6.39 7.75 84.80 0.66 7.05 16 26 O -0.50 -9.53 13.56 -89.97 -1.22 -10.75 16 27 N -0.54 -14.46 10.39 -308.95 -3.21 -17.67 16 28 C 0.11 2.69 10.85 84.63 0.92 3.60 16 29 H 0.25 13.28 8.31 -92.71 -0.77 12.51 16 30 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.06 3.26 6.33 -2.38 -0.02 3.25 16 32 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.12 2.95 8.14 -2.39 -0.02 2.94 16 36 H 0.05 1.83 7.57 -2.39 -0.02 1.81 16 37 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.41 15.00 7.31 -92.70 -0.68 14.32 16 39 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16 42 H 0.09 1.85 8.05 -2.39 -0.02 1.83 16 43 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 44 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 45 H 0.42 3.51 9.06 -74.06 -0.67 2.84 16 46 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -67.36 377.66 -2.04 -69.41 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -0.33 Total: 30.19 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: 5.89 Total: 26.94 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -6.76 Total: -122.06 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -2.87 Total: -48.76 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -67.36 -2.04 -69.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700119780.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.111 kcal (2) G-P(sol) polarization free energy of solvation -67.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds