Wall clock time and date at job start Tue Mar 31 2020 18:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99937 * 2 1 4 4 H 1.48506 * 109.47130 * 90.00103 * 3 2 1 5 5 H 1.48504 * 109.47164 * 209.99996 * 3 2 1 6 6 H 1.48501 * 109.47478 * 330.00000 * 3 2 1 7 7 C 1.38807 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00457 * 169.28971 * 7 2 1 9 9 N 1.36939 * 119.99928 * 349.29497 * 7 2 1 10 10 C 1.47158 * 120.97874 * 328.89649 * 9 7 2 11 11 C 1.53292 * 108.38079 * 230.51178 * 10 9 7 12 12 O 1.42963 * 109.22772 * 307.69716 * 11 10 9 13 13 C 1.42961 * 114.16299 * 62.58238 * 12 11 10 14 14 C 1.47147 * 120.98318 * 148.61237 * 9 7 2 15 15 H 1.08998 * 109.68560 * 249.21100 * 14 9 7 16 16 C 1.53004 * 109.68199 * 9.76777 * 14 9 7 17 17 N 1.46500 * 109.46866 * 299.31398 * 16 14 9 18 18 C 1.34780 * 119.99587 * 179.97438 * 17 16 14 19 19 O 1.21278 * 120.00158 * 0.02562 * 18 17 16 20 20 C 1.50709 * 119.99503 * 180.02562 * 18 17 16 21 21 C 1.52995 * 109.46648 * 180.02562 * 20 18 17 22 22 C 1.50698 * 109.47007 * 179.97438 * 21 20 18 23 23 C 1.38832 * 120.35449 * 90.00145 * 22 21 20 24 24 C 1.38387 * 118.48439 * 179.97438 * 23 22 21 25 25 C 1.38918 * 119.11208 * 359.97438 * 24 23 22 26 26 O 1.35669 * 119.68260 * 180.02562 * 25 24 23 27 27 N 1.32245 * 120.63026 * 0.02673 * 25 24 23 28 28 C 1.31971 * 121.64820 * 359.68056 * 27 25 24 29 29 H 0.97007 * 119.99835 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.68021 * 350.23502 * 10 9 7 31 31 H 1.09002 * 109.67613 * 110.75399 * 10 9 7 32 32 H 1.08999 * 109.51695 * 67.62522 * 11 10 9 33 33 H 1.09005 * 109.50964 * 187.72373 * 11 10 9 34 34 H 1.08995 * 109.51475 * 57.34527 * 13 12 11 35 35 H 1.09004 * 109.51213 * 177.49703 * 13 12 11 36 36 H 1.09002 * 109.47110 * 59.31513 * 16 14 9 37 37 H 1.08998 * 109.46774 * 179.31698 * 16 14 9 38 38 H 0.96998 * 120.00021 * 0.02562 * 17 16 14 39 39 H 1.08996 * 109.46608 * 300.00236 * 20 18 17 40 40 H 1.08997 * 109.47038 * 60.00173 * 20 18 17 41 41 H 1.09002 * 109.47109 * 299.99827 * 21 20 18 42 42 H 1.08997 * 109.47425 * 60.00208 * 21 20 18 43 43 H 1.07997 * 120.75705 * 359.97438 * 23 22 21 44 44 H 1.07994 * 120.43932 * 180.02562 * 24 23 22 45 45 H 0.96703 * 114.00221 * 90.00337 * 26 25 24 46 46 H 1.08003 * 119.58541 * 180.31087 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4402 -0.7001 6 1 1.4477 2.6528 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0761 -1.2102 -0.1743 9 7 1.3434 -2.3778 0.2192 10 6 0.1520 -2.4231 1.0818 11 6 0.3374 -3.5509 2.1034 12 8 0.6695 -4.7593 1.4155 13 6 1.9020 -4.7019 0.6933 14 6 1.7934 -3.6320 -0.4051 15 1 1.0712 -3.9470 -1.1582 16 6 3.1609 -3.4209 -1.0580 17 7 3.0538 -2.3899 -2.0933 18 6 4.1414 -2.0349 -2.8058 19 8 5.2085 -2.5693 -2.5903 20 6 4.0313 -0.9739 -3.8704 21 6 5.3987 -0.7629 -4.5234 22 6 5.2885 0.2976 -5.5884 23 6 5.4951 1.6336 -5.2722 24 6 5.3848 2.5751 -6.2803 25 6 5.0735 2.1542 -7.5671 26 8 4.9631 3.0674 -8.5644 27 7 4.8839 0.8720 -7.8292 28 6 4.9878 -0.0495 -6.8902 29 1 -0.4850 0.8401 -0.0004 30 1 0.0388 -1.4718 1.6017 31 1 -0.7327 -2.6178 0.4757 32 1 1.1420 -3.2906 2.7911 33 1 -0.5878 -3.6916 2.6622 34 1 2.7123 -4.4458 1.3758 35 1 2.1021 -5.6714 0.2370 36 1 3.8794 -3.1036 -0.3022 37 1 3.4963 -4.3549 -1.5088 38 1 2.2004 -1.9622 -2.2654 39 1 3.3130 -1.2910 -4.6264 40 1 3.6956 -0.0401 -3.4194 41 1 6.1173 -0.4460 -3.7675 42 1 5.7339 -1.6968 -4.9745 43 1 5.7364 1.9312 -4.2624 44 1 5.5395 3.6230 -6.0697 45 1 5.7915 3.2413 -9.0320 46 1 4.8309 -1.0879 -7.1424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700119781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:42 Heat of formation + Delta-G solvation = -63.527627 kcal Electronic energy + Delta-G solvation = -29060.261229 eV Core-core repulsion = 24951.052730 eV Total energy + Delta-G solvation = -4109.208499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.67185 -39.38843 -38.36948 -37.44525 -35.41901 -34.11923 -33.58658 -32.27456 -31.59558 -30.51105 -29.39892 -27.26166 -25.91889 -24.24545 -23.89129 -23.49647 -21.99059 -21.42811 -19.88326 -19.53361 -19.03138 -17.18348 -17.10736 -16.44536 -16.15370 -15.97800 -15.74950 -15.14276 -14.97520 -14.89914 -14.58518 -14.41800 -14.11888 -13.85055 -13.50547 -13.40102 -13.25811 -13.06968 -12.86064 -12.65451 -12.12305 -12.04810 -11.81923 -11.69298 -11.57036 -11.13659 -10.96746 -10.95353 -10.78916 -10.46040 -10.29981 -10.10307 -10.04415 -9.71256 -9.61511 -9.47140 -9.03839 -8.86896 -8.72778 -8.30658 -6.78487 -5.96239 -3.46494 0.78228 1.03698 3.13165 3.21633 3.27581 3.29930 3.31516 3.57002 3.80022 4.27960 4.47579 4.49953 4.64387 4.75685 4.81383 5.03807 5.09874 5.16354 5.21022 5.27479 5.44759 5.48015 5.56120 5.68346 5.73173 5.79481 5.81248 5.86207 5.98969 6.06558 6.11772 6.12184 6.19749 6.21244 6.29519 6.34854 6.48850 6.71995 7.03101 7.07539 7.24590 7.44821 7.64250 7.71921 7.83119 8.17086 8.24108 8.78313 8.99875 9.60294 10.19873 11.10015 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014835 B = 0.002961 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.937925 B = 9454.528085 C =10678.036227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.010 3.990 3 Si 0.895 3.105 4 H -0.286 1.286 5 H -0.277 1.277 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.074 0.926 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.393 6.393 13 C 0.056 3.944 14 C 0.124 3.876 15 H 0.042 0.958 16 C 0.136 3.864 17 N -0.694 5.694 18 C 0.509 3.491 19 O -0.566 6.566 20 C -0.137 4.137 21 C -0.058 4.058 22 C -0.136 4.136 23 C -0.057 4.057 24 C -0.182 4.182 25 C 0.298 3.702 26 O -0.484 6.484 27 N -0.502 5.502 28 C 0.126 3.874 29 H 0.256 0.744 30 H 0.092 0.908 31 H 0.029 0.971 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.416 0.584 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.398 0.602 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.618 0.371 -8.769 12.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.725 3.275 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.092 0.908 9 N -0.317 5.317 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.017 3.983 15 H 0.059 0.941 16 C 0.012 3.988 17 N -0.345 5.345 18 C 0.295 3.705 19 O -0.447 6.447 20 C -0.177 4.177 21 C -0.096 4.096 22 C -0.138 4.138 23 C -0.083 4.083 24 C -0.203 4.203 25 C 0.120 3.880 26 O -0.291 6.291 27 N -0.221 5.221 28 C -0.031 4.031 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.254 0.746 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.255 0.745 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.320 -0.171 -9.320 12.494 hybrid contribution 0.624 1.864 0.680 2.080 sum 8.944 1.693 -8.640 12.550 Atomic orbital electron populations 1.69974 1.05180 1.25701 1.53407 1.25152 0.95295 0.98179 1.00385 0.86403 0.79129 0.83877 0.78085 1.21296 1.20264 1.21560 1.19242 0.91328 0.83277 1.44670 0.90844 1.44105 1.31932 1.03063 1.52611 1.21420 0.88850 0.96819 0.91098 1.23347 0.99130 0.86539 0.95270 1.87801 1.40197 1.36116 1.67013 1.22945 0.86628 0.98688 0.94048 1.21523 0.93761 0.89302 0.93682 0.94090 1.21142 0.97450 0.90111 0.90124 1.46036 1.12660 1.40086 1.35758 1.20427 0.84077 0.83414 0.82586 1.90637 1.28138 1.56280 1.69604 1.21630 0.98614 0.99648 0.97806 1.20247 0.97043 0.96827 0.95506 1.21026 1.00862 0.95543 0.96404 1.21534 0.95018 0.91994 0.99704 1.22115 1.03257 1.01596 0.93330 1.19175 0.95563 0.86173 0.87129 1.84795 1.38008 1.57010 1.49246 1.67161 1.14917 1.01725 1.38252 1.22470 0.94493 0.98348 0.87789 0.93400 0.88959 0.95264 0.94133 0.90243 0.93488 0.89954 0.91585 0.92374 0.74647 0.89008 0.88670 0.89821 0.89709 0.84108 0.84240 0.74529 0.82154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.61 11.13 55.49 0.62 -22.99 16 2 C 0.01 0.24 5.06 -17.43 -0.09 0.15 16 3 Si 0.90 19.98 29.57 -169.99 -5.03 14.95 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.26 -6.09 7.06 -15.06 -0.11 -6.20 16 8 H 0.07 1.78 5.82 -52.49 -0.31 1.47 16 9 N -0.59 -13.19 3.03 -164.05 -0.50 -13.69 16 10 C 0.14 3.19 5.37 -3.53 -0.02 3.17 16 11 C 0.04 0.66 6.98 37.31 0.26 0.92 16 12 O -0.39 -7.50 10.74 -35.23 -0.38 -7.88 16 13 C 0.06 0.97 6.31 37.53 0.24 1.20 16 14 C 0.12 2.35 3.23 -67.20 -0.22 2.13 16 15 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 16 C 0.14 2.41 4.46 -4.04 -0.02 2.39 16 17 N -0.69 -12.26 3.78 -60.29 -0.23 -12.49 16 18 C 0.51 8.58 7.83 -10.98 -0.09 8.50 16 19 O -0.57 -10.95 15.98 5.56 0.09 -10.86 16 20 C -0.14 -1.83 5.68 -27.88 -0.16 -1.99 16 21 C -0.06 -0.68 4.66 -27.89 -0.13 -0.81 16 22 C -0.14 -1.51 5.15 -104.47 -0.54 -2.05 16 23 C -0.06 -0.61 9.85 -39.31 -0.39 -0.99 16 24 C -0.18 -1.90 10.04 -39.28 -0.39 -2.29 16 25 C 0.30 3.51 7.74 -17.12 -0.13 3.38 16 26 O -0.48 -4.93 13.56 -18.71 -0.25 -5.18 16 27 N -0.50 -6.48 10.39 -13.33 -0.14 -6.61 16 28 C 0.13 1.42 10.85 -17.56 -0.19 1.23 16 29 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.09 2.26 6.32 -51.93 -0.33 1.93 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.28 7.56 -51.93 -0.39 0.89 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.42 7.72 7.32 -40.82 -0.30 7.43 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.08 1.04 8.05 -51.93 -0.42 0.62 16 42 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 43 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 44 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.40 1.90 9.06 45.56 0.41 2.31 16 46 H 0.16 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 377.71 15.07 5.69 5.69 Total: -1.00 -30.95 377.71 -8.05 -39.00 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.96 Total: 11.31 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -1.97 Total: 8.75 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.25 Total: -55.78 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.54 Total: -23.92 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.95 -8.05 -39.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700119781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.526 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds