Wall clock time and date at job start Tue Mar 31 2020 18:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99937 * 2 1 4 4 H 1.48506 * 109.47130 * 90.00103 * 3 2 1 5 5 H 1.48504 * 109.47164 * 209.99996 * 3 2 1 6 6 H 1.48501 * 109.47478 * 330.00000 * 3 2 1 7 7 C 1.38807 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00457 * 169.28971 * 7 2 1 9 9 N 1.36939 * 119.99928 * 349.29497 * 7 2 1 10 10 C 1.47158 * 120.97874 * 328.89649 * 9 7 2 11 11 C 1.53292 * 108.38079 * 230.51178 * 10 9 7 12 12 O 1.42963 * 109.22772 * 307.69716 * 11 10 9 13 13 C 1.42961 * 114.16299 * 62.58238 * 12 11 10 14 14 C 1.47147 * 120.98318 * 148.61237 * 9 7 2 15 15 H 1.08998 * 109.68560 * 249.21100 * 14 9 7 16 16 C 1.53004 * 109.68199 * 9.76777 * 14 9 7 17 17 N 1.46500 * 109.46866 * 299.31398 * 16 14 9 18 18 C 1.34780 * 119.99587 * 179.97438 * 17 16 14 19 19 O 1.21278 * 120.00158 * 0.02562 * 18 17 16 20 20 C 1.50709 * 119.99503 * 180.02562 * 18 17 16 21 21 C 1.52995 * 109.46648 * 180.02562 * 20 18 17 22 22 C 1.50698 * 109.47007 * 179.97438 * 21 20 18 23 23 C 1.38832 * 120.35449 * 90.00145 * 22 21 20 24 24 C 1.38387 * 118.48439 * 179.97438 * 23 22 21 25 25 C 1.38918 * 119.11208 * 359.97438 * 24 23 22 26 26 O 1.35669 * 119.68260 * 180.02562 * 25 24 23 27 27 N 1.32245 * 120.63026 * 0.02673 * 25 24 23 28 28 C 1.31971 * 121.64820 * 359.68056 * 27 25 24 29 29 H 0.97007 * 119.99835 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.68021 * 350.23502 * 10 9 7 31 31 H 1.09002 * 109.67613 * 110.75399 * 10 9 7 32 32 H 1.08999 * 109.51695 * 67.62522 * 11 10 9 33 33 H 1.09005 * 109.50964 * 187.72373 * 11 10 9 34 34 H 1.08995 * 109.51475 * 57.34527 * 13 12 11 35 35 H 1.09004 * 109.51213 * 177.49703 * 13 12 11 36 36 H 1.09002 * 109.47110 * 59.31513 * 16 14 9 37 37 H 1.08998 * 109.46774 * 179.31698 * 16 14 9 38 38 H 0.96998 * 120.00021 * 0.02562 * 17 16 14 39 39 H 1.08996 * 109.46608 * 300.00236 * 20 18 17 40 40 H 1.08997 * 109.47038 * 60.00173 * 20 18 17 41 41 H 1.09002 * 109.47109 * 299.99827 * 21 20 18 42 42 H 1.08997 * 109.47425 * 60.00208 * 21 20 18 43 43 H 1.07997 * 120.75705 * 359.97438 * 23 22 21 44 44 H 1.07994 * 120.43932 * 180.02562 * 24 23 22 45 45 H 0.96703 * 114.00221 * 90.00337 * 26 25 24 46 46 H 1.08003 * 119.58541 * 180.31087 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4402 -0.7001 6 1 1.4477 2.6528 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0761 -1.2102 -0.1743 9 7 1.3434 -2.3778 0.2192 10 6 0.1520 -2.4231 1.0818 11 6 0.3374 -3.5509 2.1034 12 8 0.6695 -4.7593 1.4155 13 6 1.9020 -4.7019 0.6933 14 6 1.7934 -3.6320 -0.4051 15 1 1.0712 -3.9470 -1.1582 16 6 3.1609 -3.4209 -1.0580 17 7 3.0538 -2.3899 -2.0933 18 6 4.1414 -2.0349 -2.8058 19 8 5.2085 -2.5693 -2.5903 20 6 4.0313 -0.9739 -3.8704 21 6 5.3987 -0.7629 -4.5234 22 6 5.2885 0.2976 -5.5884 23 6 5.4951 1.6336 -5.2722 24 6 5.3848 2.5751 -6.2803 25 6 5.0735 2.1542 -7.5671 26 8 4.9631 3.0674 -8.5644 27 7 4.8839 0.8720 -7.8292 28 6 4.9878 -0.0495 -6.8902 29 1 -0.4850 0.8401 -0.0004 30 1 0.0388 -1.4718 1.6017 31 1 -0.7327 -2.6178 0.4757 32 1 1.1420 -3.2906 2.7911 33 1 -0.5878 -3.6916 2.6622 34 1 2.7123 -4.4458 1.3758 35 1 2.1021 -5.6714 0.2370 36 1 3.8794 -3.1036 -0.3022 37 1 3.4963 -4.3549 -1.5088 38 1 2.2004 -1.9622 -2.2654 39 1 3.3130 -1.2910 -4.6264 40 1 3.6956 -0.0401 -3.4194 41 1 6.1173 -0.4460 -3.7675 42 1 5.7339 -1.6968 -4.9745 43 1 5.7364 1.9312 -4.2624 44 1 5.5395 3.6230 -6.0697 45 1 5.7915 3.2413 -9.0320 46 1 4.8309 -1.0879 -7.1424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700119781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:41 Heat of formation + Delta-G solvation = -87.328512 kcal Electronic energy + Delta-G solvation = -29061.293312 eV Core-core repulsion = 24951.052730 eV Total energy + Delta-G solvation = -4110.240583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51863 -40.78651 -39.85886 -38.25737 -36.94915 -35.31107 -35.02973 -33.31904 -33.03848 -32.13322 -30.41112 -28.96930 -27.23320 -25.41597 -25.17377 -24.71540 -23.36242 -22.53624 -21.42987 -20.96429 -19.80833 -18.75933 -17.97099 -17.82005 -17.57058 -17.22198 -16.98365 -16.37021 -16.36467 -16.20452 -16.01099 -15.71338 -15.40664 -15.22854 -14.94042 -14.61192 -14.30729 -14.25103 -14.16806 -14.04939 -13.44799 -13.12066 -12.99417 -12.91021 -12.81403 -12.72934 -12.58487 -12.45755 -12.11505 -11.99234 -11.98384 -11.84425 -11.29966 -10.96109 -10.84090 -10.59410 -10.54924 -10.42177 -9.79043 -9.74944 -8.60810 -7.85044 -5.36763 -0.03756 0.21603 1.42178 1.48075 1.53140 1.79294 2.37997 2.47616 2.56016 2.81823 3.04859 3.31183 3.45905 3.65528 3.75325 3.91642 4.00468 4.03215 4.06603 4.20153 4.26919 4.28227 4.38173 4.46691 4.48903 4.62369 4.65795 4.67380 4.68490 4.73250 4.80091 4.92627 4.99879 5.02182 5.13102 5.17313 5.32037 5.33523 5.57298 5.60927 5.67013 5.71826 6.30697 6.38712 6.61888 6.76494 6.91533 7.11928 7.39991 7.78115 8.34774 9.19170 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014835 B = 0.002961 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.937925 B = 9454.528085 C =10678.036227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.033 4.033 3 Si 0.944 3.056 4 H -0.295 1.295 5 H -0.265 1.265 6 H -0.297 1.297 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.605 5.605 10 C 0.149 3.851 11 C 0.046 3.954 12 O -0.399 6.399 13 C 0.057 3.943 14 C 0.125 3.875 15 H 0.036 0.964 16 C 0.143 3.857 17 N -0.700 5.700 18 C 0.508 3.492 19 O -0.590 6.590 20 C -0.131 4.131 21 C -0.047 4.047 22 C -0.140 4.140 23 C -0.062 4.062 24 C -0.182 4.182 25 C 0.289 3.711 26 O -0.495 6.495 27 N -0.530 5.530 28 C 0.121 3.879 29 H 0.249 0.751 30 H 0.065 0.935 31 H 0.005 0.995 32 H 0.043 0.957 33 H 0.103 0.897 34 H 0.049 0.951 35 H 0.117 0.883 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.411 0.589 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.153 0.847 44 H 0.160 0.840 45 H 0.419 0.581 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.713 -0.109 -9.175 13.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.230 4.230 3 Si 0.773 3.227 4 H -0.222 1.222 5 H -0.189 1.189 6 H -0.223 1.223 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.331 5.331 10 C 0.023 3.977 11 C -0.031 4.031 12 O -0.317 6.317 13 C -0.022 4.022 14 C 0.019 3.981 15 H 0.054 0.946 16 C 0.018 3.982 17 N -0.350 5.350 18 C 0.296 3.704 19 O -0.473 6.473 20 C -0.171 4.171 21 C -0.086 4.086 22 C -0.142 4.142 23 C -0.088 4.088 24 C -0.203 4.203 25 C 0.111 3.889 26 O -0.305 6.305 27 N -0.249 5.249 28 C -0.035 4.035 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.023 0.977 32 H 0.062 0.938 33 H 0.121 0.879 34 H 0.068 0.932 35 H 0.135 0.865 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.248 0.752 39 H 0.129 0.871 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.171 0.829 44 H 0.178 0.822 45 H 0.279 0.721 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 9.453 -0.666 -9.742 13.591 hybrid contribution 0.313 1.978 0.767 2.144 sum 9.766 1.312 -8.975 13.328 Atomic orbital electron populations 1.70107 1.06288 1.25559 1.55454 1.25646 0.95726 1.00396 1.01221 0.85623 0.78615 0.81075 0.77353 1.22234 1.18920 1.22323 1.19320 0.91187 0.83873 1.42684 0.91029 1.44318 1.31692 1.03897 1.53205 1.21235 0.88158 0.96911 0.91376 1.23206 1.00451 0.85286 0.94190 1.87803 1.41059 1.35737 1.67120 1.23078 0.86003 0.99704 0.93376 1.21647 0.94059 0.88261 0.94151 0.94609 1.21073 0.96143 0.91070 0.89905 1.46103 1.12726 1.40209 1.35932 1.20969 0.83250 0.83515 0.82691 1.90624 1.28875 1.57333 1.70426 1.21640 1.00211 0.98060 0.97170 1.20120 0.95764 0.97327 0.95351 1.20942 1.01533 0.95568 0.96127 1.21776 0.94573 0.91966 1.00435 1.22310 1.02692 1.02635 0.92667 1.19425 0.95392 0.86154 0.87970 1.84738 1.39885 1.56568 1.49276 1.67186 1.16098 1.02509 1.39089 1.22758 0.94053 0.99005 0.87688 0.94193 0.91638 0.97657 0.93843 0.87906 0.93236 0.86530 0.93241 0.90268 0.75217 0.87122 0.89089 0.90541 0.89206 0.82894 0.82207 0.72058 0.80485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.69 11.13 21.65 0.24 -49.45 16 2 C -0.03 -1.66 5.06 84.86 0.43 -1.23 16 3 Si 0.94 41.07 29.57 68.60 2.03 43.10 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.30 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.24 -11.41 7.06 84.03 0.59 -10.82 16 8 H 0.07 3.42 5.82 -2.91 -0.02 3.40 16 9 N -0.61 -26.83 3.03 -672.94 -2.04 -28.87 16 10 C 0.15 6.66 5.37 86.35 0.46 7.12 16 11 C 0.05 1.69 6.98 72.08 0.50 2.20 16 12 O -0.40 -14.37 10.74 -148.98 -1.60 -15.97 16 13 C 0.06 1.82 6.31 72.23 0.46 2.28 16 14 C 0.13 4.57 3.23 45.11 0.15 4.71 16 15 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 16 C 0.14 4.85 4.46 86.38 0.38 5.23 16 17 N -0.70 -24.00 3.78 -463.04 -1.75 -25.75 16 18 C 0.51 16.49 7.83 87.66 0.69 17.18 16 19 O -0.59 -22.09 15.98 -3.02 -0.05 -22.14 16 20 C -0.13 -3.30 5.68 29.85 0.17 -3.13 16 21 C -0.05 -1.03 4.66 29.85 0.14 -0.89 16 22 C -0.14 -2.88 5.15 -19.77 -0.10 -2.98 16 23 C -0.06 -1.22 9.85 22.45 0.22 -0.99 16 24 C -0.18 -3.47 10.04 22.47 0.23 -3.25 16 25 C 0.29 6.42 7.74 84.79 0.66 7.08 16 26 O -0.49 -9.39 13.56 -89.86 -1.22 -10.60 16 27 N -0.53 -13.06 10.39 -308.96 -3.21 -16.27 16 28 C 0.12 2.57 10.85 84.63 0.92 3.49 16 29 H 0.25 13.20 8.31 -92.70 -0.77 12.43 16 30 H 0.07 3.28 6.32 -2.39 -0.02 3.26 16 31 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.05 1.86 7.56 -2.39 -0.02 1.84 16 37 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.41 15.03 7.32 -92.71 -0.68 14.35 16 39 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.08 1.79 8.05 -2.39 -0.02 1.77 16 42 H 0.09 1.87 8.05 -2.39 -0.02 1.85 16 43 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 44 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 45 H 0.42 3.39 9.06 -74.06 -0.67 2.72 16 46 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -65.71 377.71 -2.04 -67.74 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -0.33 Total: 32.22 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 5.89 Total: 25.99 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -6.75 Total: -120.34 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -2.87 Total: -48.71 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -65.71 -2.04 -67.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700119781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.585 kcal (2) G-P(sol) polarization free energy of solvation -65.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds