Wall clock time and date at job start Tue Mar 31 2020 18:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47141 * 299.99913 * 3 2 1 6 6 H 1.48496 * 109.47180 * 60.00224 * 3 2 1 7 7 C 1.38808 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00389 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99926 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.52702 * 300.08168 * 10 9 7 12 12 O 1.42904 * 109.47086 * 59.91974 * 11 10 9 13 13 C 1.53046 * 109.49857 * 180.02562 * 10 9 7 14 14 C 1.53039 * 109.53332 * 301.41481 * 13 10 9 15 15 C 1.53184 * 109.31392 * 298.62937 * 14 13 10 16 16 N 1.46927 * 108.89067 * 54.57058 * 15 14 13 17 17 C 1.34782 * 120.62981 * 126.46316 * 16 15 14 18 18 O 1.21610 * 119.99744 * 175.68608 * 17 16 15 19 19 C 1.47394 * 120.00149 * 355.67898 * 17 16 15 20 20 C 1.37357 * 128.56577 * 47.84349 * 19 17 16 21 21 O 1.33493 * 106.34206 * 179.85908 * 20 19 17 22 22 N 1.20657 * 113.15631 * 0.44594 * 21 20 19 23 23 C 1.30017 * 112.30296 * 359.72240 * 22 21 20 24 24 C 1.50696 * 127.33758 * 179.97438 * 23 22 21 25 25 C 1.52998 * 117.50012 * 8.66891 * 24 23 22 26 26 C 1.53000 * 60.00146 * 252.50943 * 25 24 23 27 27 C 1.46958 * 118.71550 * 306.63821 * 16 15 14 28 28 H 0.96995 * 119.99638 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00008 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47445 * 179.91749 * 11 10 9 31 31 H 1.08996 * 109.47575 * 299.92089 * 11 10 9 32 32 H 0.96702 * 114.00152 * 180.02562 * 12 11 10 33 33 H 1.09003 * 109.46032 * 181.39302 * 13 10 9 34 34 H 1.09003 * 109.44616 * 61.42581 * 13 10 9 35 35 H 1.09005 * 109.49334 * 178.68043 * 14 13 10 36 36 H 1.08997 * 109.52844 * 58.60464 * 14 13 10 37 37 H 1.09005 * 109.58430 * 174.42445 * 15 14 13 38 38 H 1.08998 * 109.58915 * 294.70893 * 15 14 13 39 39 H 1.08005 * 126.82942 * 359.97438 * 20 19 17 40 40 H 1.09001 * 115.54986 * 154.37087 * 24 23 22 41 41 H 1.09001 * 117.49555 * 359.97438 * 25 24 23 42 42 H 1.08994 * 117.50139 * 145.02078 * 25 24 23 43 43 H 1.09005 * 117.49576 * 252.50991 * 26 25 24 44 44 H 1.09001 * 117.50198 * 107.48641 * 26 25 24 45 45 H 1.09011 * 109.46375 * 293.57446 * 27 16 15 46 46 H 1.09002 * 109.59694 * 173.21958 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 2.9387 -3.7377 -1.2502 12 8 3.8666 -2.6509 -1.2498 13 6 1.0641 -4.8205 -0.0021 14 6 0.1606 -4.7222 1.2292 15 6 1.0174 -4.8187 2.4954 16 7 2.0702 -3.7955 2.4365 17 6 2.2358 -2.9215 3.4490 18 8 3.1591 -2.1305 3.4246 19 6 1.2976 -2.9243 4.5858 20 6 0.8465 -3.9931 5.3212 21 8 0.0182 -3.4934 6.2411 22 7 -0.1051 -2.2953 6.1678 23 6 0.6083 -1.7837 5.2088 24 6 0.7074 -0.3316 4.8181 25 6 0.0521 0.6953 5.7437 26 6 -0.5804 0.3738 4.3881 27 6 2.9364 -3.7411 1.2506 28 1 -0.4849 0.8400 -0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 3.4844 -4.6813 -1.2494 31 1 2.3128 -3.6807 -2.1407 32 1 4.4583 -2.6386 -2.0146 33 1 1.6095 -5.7640 0.0221 34 1 0.4542 -4.7766 -0.9045 35 1 -0.5623 -5.5379 1.2161 36 1 -0.3670 -3.7685 1.2188 37 1 0.3930 -4.6504 3.3728 38 1 1.4719 -5.8077 2.5546 39 1 1.1110 -5.0312 5.1838 40 1 1.6314 -0.0414 4.3180 41 1 -0.4512 0.3206 6.6350 42 1 0.5448 1.6614 5.8527 43 1 -0.5036 1.1285 3.6053 44 1 -1.4993 -0.2124 4.3878 45 1 3.5495 -4.6415 1.2070 46 1 3.5783 -2.8619 1.3066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700238889.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:40 Heat of formation + Delta-G solvation = 35.185548 kcal Electronic energy + Delta-G solvation = -31471.475418 eV Core-core repulsion = 27366.547444 eV Total energy + Delta-G solvation = -4104.927974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.75636 -39.83657 -37.78781 -37.11330 -35.77234 -33.96897 -32.98119 -32.28969 -31.65352 -31.01735 -28.60494 -26.16701 -25.41058 -24.27792 -23.55032 -23.34558 -22.06477 -21.73425 -20.11672 -19.83549 -18.47058 -17.62268 -17.49925 -17.16916 -16.47462 -16.22045 -15.74330 -15.30066 -15.09767 -14.50457 -14.44271 -14.15468 -13.86116 -13.61238 -13.44346 -13.15693 -13.04259 -12.67959 -12.29373 -12.11129 -11.81832 -11.68619 -11.46456 -11.31852 -11.23561 -11.04795 -10.84629 -10.75445 -10.64660 -10.49864 -10.17885 -10.14821 -9.72868 -9.70443 -9.54841 -9.34939 -9.23729 -9.00333 -8.82350 -8.12065 -6.82031 -5.57645 -2.83493 1.35052 1.99497 2.92450 3.27216 3.54759 3.59144 3.61709 3.66986 4.08264 4.15652 4.51937 4.72523 4.77331 4.92698 5.03268 5.08889 5.18524 5.20914 5.25064 5.30458 5.39417 5.41559 5.57098 5.61837 5.68355 5.74483 5.83737 5.84845 5.86526 5.99269 6.03275 6.06047 6.15187 6.22003 6.23758 6.34223 6.43373 6.46805 6.58152 6.75785 6.85437 7.03419 7.83340 8.15510 8.35223 8.35985 8.59551 8.63290 9.73548 10.20997 10.56822 11.65475 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009884 B = 0.006426 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.192859 B = 4356.220363 C = 6168.537431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.020 4.020 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.297 1.297 7 C -0.200 4.200 8 H 0.092 0.908 9 N -0.702 5.702 10 C 0.188 3.812 11 C 0.076 3.924 12 O -0.540 6.540 13 C -0.115 4.115 14 C -0.131 4.131 15 C 0.101 3.899 16 N -0.584 5.584 17 C 0.600 3.400 18 O -0.518 6.518 19 C -0.220 4.220 20 C -0.035 4.035 21 O 0.094 5.906 22 N -0.362 5.362 23 C 0.106 3.894 24 C -0.087 4.087 25 C -0.169 4.169 26 C -0.143 4.143 27 C 0.113 3.887 28 H 0.248 0.752 29 H 0.382 0.618 30 H 0.024 0.976 31 H 0.040 0.960 32 H 0.354 0.646 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.224 0.776 40 H 0.135 0.865 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.047 0.953 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 -13.194 6.056 14.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.213 4.213 3 Si 0.730 3.270 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.224 1.224 7 C -0.331 4.331 8 H 0.109 0.891 9 N -0.342 5.342 10 C 0.094 3.906 11 C -0.005 4.005 12 O -0.343 6.343 13 C -0.153 4.153 14 C -0.170 4.170 15 C -0.023 4.023 16 N -0.316 5.316 17 C 0.386 3.614 18 O -0.394 6.394 19 C -0.228 4.228 20 C -0.116 4.116 21 O 0.033 5.967 22 N -0.069 5.069 23 C -0.055 4.055 24 C -0.106 4.106 25 C -0.207 4.207 26 C -0.181 4.181 27 C -0.011 4.011 28 H 0.057 0.943 29 H 0.217 0.783 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.199 0.801 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.240 0.760 40 H 0.153 0.847 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.126 0.874 44 H 0.112 0.888 45 H 0.065 0.935 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.037 -12.003 7.536 14.172 hybrid contribution 0.871 0.496 -1.410 1.730 sum 0.834 -11.507 6.126 13.063 Atomic orbital electron populations 1.69673 1.04854 1.24773 1.59918 1.24620 0.95300 0.97206 1.04200 0.86221 0.79304 0.84876 0.76613 1.20567 1.22637 1.22422 1.19568 0.91965 0.83033 1.38557 0.89072 1.42419 1.05195 0.99217 1.87404 1.19948 0.90908 0.88192 0.91505 1.22742 0.91023 0.87518 0.99188 1.86884 1.50218 1.49535 1.47631 1.21626 0.97766 0.97538 0.98402 1.21844 0.97786 1.03282 0.94042 1.21872 0.89911 0.90990 0.99490 1.47604 1.33759 1.31923 1.18318 1.16709 0.83361 0.80497 0.80809 1.90797 1.32046 1.38302 1.78255 1.22379 1.05225 0.92642 1.02512 1.26251 0.93886 1.00267 0.91228 1.84528 1.50377 1.16418 1.45390 1.73549 1.21859 0.90985 1.20479 1.23813 0.93791 0.96336 0.91593 1.20305 1.00384 0.84612 1.05289 1.23017 1.03777 0.99186 0.94703 1.22960 0.95087 1.02510 0.97577 1.22184 0.92652 1.02131 0.84141 0.94257 0.78348 0.95832 0.94173 0.80127 0.91941 0.91439 0.91375 0.90030 0.90296 0.91698 0.76015 0.84728 0.88429 0.88188 0.87369 0.88777 0.93457 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.99 13.06 55.49 0.72 -27.26 16 2 C -0.02 -0.56 5.50 -17.43 -0.10 -0.66 16 3 Si 0.90 23.63 29.55 -169.99 -5.02 18.61 16 4 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 5 H -0.30 -7.90 7.11 56.52 0.40 -7.49 16 6 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 7 C -0.20 -5.44 8.21 -15.06 -0.12 -5.56 16 8 H 0.09 2.58 5.28 -52.49 -0.28 2.30 16 9 N -0.70 -16.40 4.75 -47.12 -0.22 -16.62 16 10 C 0.19 3.40 0.68 -131.70 -0.09 3.31 16 11 C 0.08 1.27 6.08 37.16 0.23 1.50 16 12 O -0.54 -10.04 10.10 -35.23 -0.36 -10.40 16 13 C -0.12 -1.62 4.76 -26.69 -0.13 -1.75 16 14 C -0.13 -1.78 5.91 -26.62 -0.16 -1.94 16 15 C 0.10 1.28 5.96 -3.71 -0.02 1.26 16 16 N -0.58 -10.00 2.90 -174.02 -0.50 -10.50 16 17 C 0.60 11.78 7.66 -12.53 -0.10 11.69 16 18 O -0.52 -12.30 16.54 5.27 0.09 -12.21 16 19 C -0.22 -3.72 5.53 -102.89 -0.57 -4.29 16 20 C -0.03 -0.42 10.02 30.41 0.30 -0.12 16 21 O 0.09 1.28 11.06 18.65 0.21 1.49 16 22 N -0.36 -5.91 11.71 34.78 0.41 -5.51 16 23 C 0.11 1.90 7.08 -79.77 -0.56 1.34 16 24 C -0.09 -1.62 6.31 -91.77 -0.58 -2.20 16 25 C -0.17 -2.61 10.16 -26.73 -0.27 -2.89 16 26 C -0.14 -2.52 10.23 -26.73 -0.27 -2.80 16 27 C 0.11 2.06 4.84 -3.69 -0.02 2.05 16 28 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.38 9.63 6.42 -40.82 -0.26 9.36 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.35 4.82 9.12 45.56 0.42 5.24 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.42 6.75 -51.93 -0.35 1.07 16 37 H 0.08 0.92 4.47 -51.93 -0.23 0.68 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.22 1.58 7.56 -52.48 -0.40 1.18 16 40 H 0.13 2.82 8.14 -51.93 -0.42 2.40 16 41 H 0.10 1.43 7.97 -51.93 -0.41 1.01 16 42 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 44 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 45 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 46 H 0.11 2.39 5.74 -51.93 -0.30 2.09 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -34.83 371.13 -7.15 -41.97 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -5.60 Total: 15.90 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -2.46 Total: -1.06 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 0.40 Total: -59.89 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.06 Total: -21.13 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.02 Total: 18.61 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.83 -7.15 -41.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700238889.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.160 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds