Wall clock time and date at job start Tue Mar 31 2020 18:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47141 * 299.99913 * 3 2 1 6 6 H 1.48496 * 109.47180 * 60.00224 * 3 2 1 7 7 C 1.38808 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00389 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99926 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.52702 * 300.08168 * 10 9 7 12 12 O 1.42904 * 109.47086 * 59.91974 * 11 10 9 13 13 C 1.53046 * 109.49857 * 180.02562 * 10 9 7 14 14 C 1.53039 * 109.53332 * 301.41481 * 13 10 9 15 15 C 1.53184 * 109.31392 * 298.62937 * 14 13 10 16 16 N 1.46927 * 108.89067 * 54.57058 * 15 14 13 17 17 C 1.34782 * 120.62981 * 126.46316 * 16 15 14 18 18 O 1.21610 * 119.99744 * 175.68608 * 17 16 15 19 19 C 1.47394 * 120.00149 * 355.67898 * 17 16 15 20 20 C 1.37357 * 128.56577 * 47.84349 * 19 17 16 21 21 O 1.33493 * 106.34206 * 179.85908 * 20 19 17 22 22 N 1.20657 * 113.15631 * 0.44594 * 21 20 19 23 23 C 1.30017 * 112.30296 * 359.72240 * 22 21 20 24 24 C 1.50696 * 127.33758 * 179.97438 * 23 22 21 25 25 C 1.52998 * 117.50012 * 8.66891 * 24 23 22 26 26 C 1.53000 * 60.00146 * 252.50943 * 25 24 23 27 27 C 1.46958 * 118.71550 * 306.63821 * 16 15 14 28 28 H 0.96995 * 119.99638 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00008 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47445 * 179.91749 * 11 10 9 31 31 H 1.08996 * 109.47575 * 299.92089 * 11 10 9 32 32 H 0.96702 * 114.00152 * 180.02562 * 12 11 10 33 33 H 1.09003 * 109.46032 * 181.39302 * 13 10 9 34 34 H 1.09003 * 109.44616 * 61.42581 * 13 10 9 35 35 H 1.09005 * 109.49334 * 178.68043 * 14 13 10 36 36 H 1.08997 * 109.52844 * 58.60464 * 14 13 10 37 37 H 1.09005 * 109.58430 * 174.42445 * 15 14 13 38 38 H 1.08998 * 109.58915 * 294.70893 * 15 14 13 39 39 H 1.08005 * 126.82942 * 359.97438 * 20 19 17 40 40 H 1.09001 * 115.54986 * 154.37087 * 24 23 22 41 41 H 1.09001 * 117.49555 * 359.97438 * 25 24 23 42 42 H 1.08994 * 117.50139 * 145.02078 * 25 24 23 43 43 H 1.09005 * 117.49576 * 252.50991 * 26 25 24 44 44 H 1.09001 * 117.50198 * 107.48641 * 26 25 24 45 45 H 1.09011 * 109.46375 * 293.57446 * 27 16 15 46 46 H 1.09002 * 109.59694 * 173.21958 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 2.9387 -3.7377 -1.2502 12 8 3.8666 -2.6509 -1.2498 13 6 1.0641 -4.8205 -0.0021 14 6 0.1606 -4.7222 1.2292 15 6 1.0174 -4.8187 2.4954 16 7 2.0702 -3.7955 2.4365 17 6 2.2358 -2.9215 3.4490 18 8 3.1591 -2.1305 3.4246 19 6 1.2976 -2.9243 4.5858 20 6 0.8465 -3.9931 5.3212 21 8 0.0182 -3.4934 6.2411 22 7 -0.1051 -2.2953 6.1678 23 6 0.6083 -1.7837 5.2088 24 6 0.7074 -0.3316 4.8181 25 6 0.0521 0.6953 5.7437 26 6 -0.5804 0.3738 4.3881 27 6 2.9364 -3.7411 1.2506 28 1 -0.4849 0.8400 -0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 3.4844 -4.6813 -1.2494 31 1 2.3128 -3.6807 -2.1407 32 1 4.4583 -2.6386 -2.0146 33 1 1.6095 -5.7640 0.0221 34 1 0.4542 -4.7766 -0.9045 35 1 -0.5623 -5.5379 1.2161 36 1 -0.3670 -3.7685 1.2188 37 1 0.3930 -4.6504 3.3728 38 1 1.4719 -5.8077 2.5546 39 1 1.1110 -5.0312 5.1838 40 1 1.6314 -0.0414 4.3180 41 1 -0.4512 0.3206 6.6350 42 1 0.5448 1.6614 5.8527 43 1 -0.5036 1.1285 3.6053 44 1 -1.4993 -0.2124 4.3878 45 1 3.5495 -4.6415 1.2070 46 1 3.5783 -2.8619 1.3066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700238889.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:39 Heat of formation + Delta-G solvation = 8.355153 kcal Electronic energy + Delta-G solvation = -31472.638872 eV Core-core repulsion = 27366.547444 eV Total energy + Delta-G solvation = -4106.091427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.98570 -41.20903 -39.24811 -38.49871 -37.14629 -35.61553 -34.43653 -33.79549 -32.88065 -32.49228 -30.39088 -27.54994 -26.60806 -25.61115 -25.55093 -24.62421 -23.43792 -22.94855 -21.33921 -21.19924 -19.89115 -19.24858 -18.79540 -18.58050 -17.79940 -17.77778 -17.18767 -16.68100 -16.57769 -16.06723 -15.80398 -15.71021 -15.49971 -15.07180 -14.81129 -14.56428 -14.40281 -14.05601 -13.65548 -13.54044 -13.23798 -13.17450 -12.95438 -12.78532 -12.70097 -12.67539 -12.55599 -12.35881 -12.05643 -11.94310 -11.78205 -11.53757 -11.38786 -11.30303 -11.14664 -10.83259 -10.58196 -10.54381 -10.52175 -9.53413 -8.77992 -7.79272 -4.99506 0.26107 0.67334 1.36945 1.40648 1.49056 1.60540 2.10848 2.36027 2.63149 2.72480 2.88845 3.26756 3.41486 3.68020 3.70696 3.77498 3.90303 3.91712 3.94565 3.98664 4.02506 4.13200 4.22758 4.34654 4.54481 4.54834 4.60883 4.62324 4.65494 4.66285 4.79226 4.84170 4.85476 4.94406 4.97708 5.04213 5.04933 5.07512 5.22003 5.47308 5.54380 5.69930 5.93738 6.45301 6.50175 7.17256 7.19576 7.24120 7.54403 8.24041 8.46233 9.44553 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009884 B = 0.006426 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.192859 B = 4356.220363 C = 6168.537431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.080 4.080 3 Si 0.935 3.065 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.307 1.307 7 C -0.168 4.168 8 H 0.079 0.921 9 N -0.709 5.709 10 C 0.174 3.826 11 C 0.076 3.924 12 O -0.575 6.575 13 C -0.109 4.109 14 C -0.129 4.129 15 C 0.094 3.906 16 N -0.582 5.582 17 C 0.591 3.409 18 O -0.581 6.581 19 C -0.263 4.263 20 C 0.019 3.981 21 O 0.113 5.887 22 N -0.367 5.367 23 C 0.078 3.922 24 C -0.110 4.110 25 C -0.134 4.134 26 C -0.152 4.152 27 C 0.117 3.883 28 H 0.238 0.762 29 H 0.370 0.630 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.375 0.625 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.032 0.968 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.284 0.716 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.193 -17.906 7.020 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.769 3.231 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.236 1.236 7 C -0.301 4.301 8 H 0.097 0.903 9 N -0.348 5.348 10 C 0.082 3.918 11 C -0.004 4.004 12 O -0.381 6.381 13 C -0.146 4.146 14 C -0.167 4.167 15 C -0.027 4.027 16 N -0.312 5.312 17 C 0.379 3.621 18 O -0.462 6.462 19 C -0.271 4.271 20 C -0.062 4.062 21 O 0.050 5.950 22 N -0.071 5.071 23 C -0.083 4.083 24 C -0.130 4.130 25 C -0.171 4.171 26 C -0.191 4.191 27 C -0.007 4.007 28 H 0.048 0.952 29 H 0.203 0.797 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.223 0.777 33 H 0.126 0.874 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.051 0.949 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.299 0.701 40 H 0.114 0.886 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.105 0.895 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.302 -16.768 8.470 18.789 hybrid contribution 1.046 1.759 -1.726 2.677 sum 0.743 -15.009 6.744 16.471 Atomic orbital electron populations 1.69761 1.05436 1.24216 1.62893 1.25064 0.95946 0.99206 1.06856 0.85575 0.78316 0.83163 0.76026 1.20779 1.22561 1.23551 1.19625 0.91457 0.84538 1.34442 0.90333 1.42526 1.04768 1.00310 1.87172 1.20459 0.91963 0.87349 0.91982 1.22729 0.91023 0.88876 0.97805 1.86803 1.51119 1.50949 1.49205 1.21645 0.97084 0.97236 0.98680 1.21836 0.98320 1.02306 0.94281 1.22311 0.89087 0.91766 0.99561 1.47769 1.34267 1.32162 1.16975 1.17167 0.83030 0.79977 0.81933 1.90753 1.34708 1.40817 1.79884 1.22217 1.07065 0.94147 1.03649 1.27141 0.90148 1.01189 0.87751 1.84509 1.49991 1.15383 1.45132 1.73531 1.21687 0.92042 1.19851 1.23771 0.95426 0.96200 0.92877 1.20134 0.98916 0.86772 1.07132 1.23087 1.01513 0.98801 0.93730 1.22853 0.94977 1.02398 0.98823 1.22015 0.92638 1.01493 0.84575 0.95240 0.79673 0.91261 0.94712 0.77743 0.87450 0.91634 0.87195 0.94900 0.89119 0.86426 0.70068 0.88619 0.86811 0.86639 0.89504 0.88514 0.89545 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.64 13.06 21.65 0.28 -60.36 16 2 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 3 Si 0.93 51.31 29.55 68.60 2.03 53.33 16 4 H -0.28 -15.33 7.11 99.48 0.71 -14.62 16 5 H -0.30 -16.07 7.11 99.48 0.71 -15.37 16 6 H -0.31 -17.13 7.11 99.48 0.71 -16.42 16 7 C -0.17 -9.51 8.21 84.03 0.69 -8.82 16 8 H 0.08 4.66 5.28 -2.91 -0.02 4.65 16 9 N -0.71 -33.79 4.75 -303.00 -1.44 -35.23 16 10 C 0.17 5.98 0.68 3.68 0.00 5.99 16 11 C 0.08 2.35 6.08 71.98 0.44 2.79 16 12 O -0.57 -21.18 10.10 -148.98 -1.51 -22.68 16 13 C -0.11 -2.61 4.76 30.62 0.15 -2.47 16 14 C -0.13 -3.01 5.91 30.67 0.18 -2.83 16 15 C 0.09 1.93 5.96 86.36 0.51 2.45 16 16 N -0.58 -18.87 2.90 -822.72 -2.39 -21.26 16 17 C 0.59 23.47 7.66 86.65 0.66 24.13 16 18 O -0.58 -29.35 16.54 -4.06 -0.07 -29.42 16 19 C -0.26 -8.67 5.53 -18.75 -0.10 -8.78 16 20 C 0.02 0.38 10.02 67.61 0.68 1.06 16 21 O 0.11 2.68 11.06 76.99 0.85 3.53 16 22 N -0.37 -11.42 11.71 -44.77 -0.52 -11.95 16 23 C 0.08 2.83 7.08 45.16 0.32 3.15 16 24 C -0.11 -4.39 6.31 -11.54 -0.07 -4.47 16 25 C -0.13 -4.23 10.16 30.59 0.31 -3.92 16 26 C -0.15 -5.73 10.23 30.59 0.31 -5.42 16 27 C 0.12 4.11 4.84 86.36 0.42 4.53 16 28 H 0.24 14.85 8.31 -92.71 -0.77 14.07 16 29 H 0.37 19.27 6.42 -92.71 -0.60 18.67 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.38 9.94 9.12 -74.06 -0.68 9.26 16 33 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.11 1.69 8.14 -2.38 -0.02 1.68 16 36 H 0.03 1.10 6.75 -2.39 -0.02 1.09 16 37 H 0.09 1.65 4.47 -2.38 -0.01 1.64 16 38 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.28 1.90 7.56 -2.91 -0.02 1.88 16 40 H 0.10 4.50 8.14 -2.39 -0.02 4.48 16 41 H 0.11 3.23 7.97 -2.39 -0.02 3.21 16 42 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.09 3.58 8.14 -2.38 -0.02 3.56 16 44 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 45 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 46 H 0.05 2.40 5.74 -2.39 -0.01 2.39 16 Total: -1.00 -86.58 371.13 1.97 -84.61 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -0.23 Total: 36.42 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 4.96 Total: 3.00 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -4.07 Total: -128.80 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -0.72 Total: -48.57 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 2.03 Total: 53.33 kcal Total: -86.58 1.97 -84.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700238889.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.963 kcal (2) G-P(sol) polarization free energy of solvation -86.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds