Wall clock time and date at job start Tue Mar 31 2020 18:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99666 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00326 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99885 * 3 2 1 7 7 C 1.38951 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99421 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00123 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00229 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99772 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46994 * 179.97438 * 12 10 9 14 14 C 1.46902 * 111.00336 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.47468 * 180.02562 * 14 13 12 16 16 H 1.09000 * 112.84907 * 43.80506 * 15 14 13 17 17 C 1.53774 * 113.61770 * 175.00022 * 15 14 13 18 18 C 1.53776 * 87.08242 * 139.98220 * 17 15 14 19 19 H 1.08997 * 113.61486 * 220.01904 * 18 17 15 20 20 N 1.46505 * 113.61396 * 89.12003 * 18 17 15 21 21 C 1.34777 * 119.99855 * 154.99938 * 20 18 17 22 22 O 1.21282 * 120.00237 * 359.97438 * 21 20 18 23 23 C 1.50696 * 119.99695 * 179.97438 * 21 20 18 24 24 C 1.50702 * 109.47250 * 180.02562 * 23 21 20 25 25 C 1.41379 * 126.58128 * 89.99318 * 24 23 21 26 26 C 1.34519 * 106.83917 * 179.97438 * 25 24 23 27 27 O 1.34305 * 108.41952 * 0.02562 * 26 25 24 28 28 C 1.34299 * 109.47780 * 359.76965 * 27 26 25 29 29 C 1.53778 * 87.08165 * 334.56674 * 18 17 15 30 30 H 0.96996 * 120.00340 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00144 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47517 * 299.99470 * 12 10 9 33 33 H 1.09007 * 109.47528 * 60.00096 * 12 10 9 34 34 H 1.00902 * 110.99925 * 56.04620 * 13 12 10 35 35 H 1.09006 * 109.47085 * 300.00434 * 14 13 12 36 36 H 1.09001 * 109.46944 * 60.00089 * 14 13 12 37 37 H 1.09003 * 113.61741 * 254.53687 * 17 15 14 38 38 H 1.09003 * 113.61361 * 25.43509 * 17 15 14 39 39 H 0.96998 * 119.99899 * 334.99951 * 20 18 17 40 40 H 1.09001 * 109.46897 * 299.99603 * 23 21 20 41 41 H 1.08992 * 109.47673 * 59.99854 * 23 21 20 42 42 H 1.07999 * 126.58159 * 359.93894 * 25 24 23 43 43 H 1.07996 * 125.78930 * 180.02562 * 26 25 24 44 44 H 1.08003 * 125.79306 * 180.23588 * 28 27 26 45 45 H 1.08994 * 113.61504 * 270.88375 * 29 18 17 46 46 H 1.09005 * 113.61137 * 139.98096 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1018 1.6965 1.2124 6 1 3.1018 1.6964 -1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1984 -5.9795 0.0027 14 6 1.4982 -7.2709 0.0039 15 6 2.5231 -8.4068 0.0050 16 1 3.3448 -8.2348 0.7002 17 6 1.8936 -9.8043 0.1291 18 6 2.9322 -10.2775 -0.9015 19 1 2.5324 -10.9785 -1.6342 20 7 4.1883 -10.7344 -0.3016 21 6 4.9689 -11.6139 -0.9601 22 8 4.6314 -12.0273 -2.0492 23 6 6.2612 -12.0834 -0.3433 24 6 6.9391 -13.0544 -1.2753 25 6 7.8677 -12.7368 -2.2930 26 6 8.2178 -13.8970 -2.8769 27 8 7.5538 -14.8946 -2.2706 28 6 6.7804 -14.3900 -1.2954 29 6 2.9814 -8.8244 -1.4023 30 1 -0.4850 0.8400 0.0004 31 1 0.3534 -2.3907 -0.0002 32 1 0.6169 -4.9202 0.8919 33 1 0.6174 -4.9213 -0.8881 34 1 2.8333 -5.9121 0.7840 35 1 0.8735 -7.3447 0.8941 36 1 0.8730 -7.3460 -0.8859 37 1 2.0194 -10.2541 1.1140 38 1 0.8663 -9.8541 -0.2319 39 1 4.4580 -10.4040 0.5696 40 1 6.9144 -11.2276 -0.1728 41 1 6.0526 -12.5761 0.6063 42 1 8.2266 -11.7518 -2.5523 43 1 8.9146 -14.0075 -3.6946 44 1 6.1383 -14.9596 -0.6399 45 1 2.2516 -8.6063 -2.1818 46 1 3.9856 -8.4830 -1.6537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700635632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:59 Heat of formation + Delta-G solvation = -37.494415 kcal Electronic energy + Delta-G solvation = -26948.989661 eV Core-core repulsion = 22840.910047 eV Total energy + Delta-G solvation = -4108.079614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.83216 -40.45135 -38.75377 -38.13771 -35.24824 -34.28135 -33.87646 -33.24155 -31.21909 -30.70295 -28.81907 -27.87476 -25.88598 -25.54170 -23.78482 -22.24302 -21.89760 -21.66738 -20.35250 -19.61576 -19.04798 -17.87159 -17.80954 -17.41878 -16.29496 -16.05851 -16.02748 -15.58827 -15.55524 -15.07000 -14.83642 -14.68803 -14.31167 -14.02446 -13.81980 -13.72818 -13.43207 -13.17997 -13.06648 -12.87247 -12.65258 -12.48113 -12.25519 -11.89437 -11.73703 -11.54423 -11.48056 -11.02123 -10.97483 -10.59429 -10.44127 -10.34166 -10.29755 -10.20528 -9.84718 -9.49753 -9.24207 -8.82542 -8.44214 -8.02676 -7.95013 -6.41372 -3.82265 1.48612 2.22072 2.38545 2.84897 3.01893 3.20243 3.25853 3.30299 3.91563 4.05912 4.24896 4.31536 4.36538 4.44505 4.57754 4.60618 4.70788 4.73535 4.87213 5.02657 5.12636 5.17537 5.26178 5.34075 5.38433 5.42118 5.53361 5.55161 5.60569 5.68489 5.71464 5.82745 5.85391 5.98862 6.00563 6.03259 6.08668 6.17964 6.27599 6.44382 6.81441 7.23332 7.24638 7.55177 7.68469 7.99016 8.06573 8.61840 9.18131 9.54811 10.06478 10.76304 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.001518 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.969699 B =18443.969924 C =19340.581552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.284 1.284 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.667 5.667 14 C 0.068 3.932 15 C -0.104 4.104 16 H 0.089 0.911 17 C -0.140 4.140 18 C 0.116 3.884 19 H 0.100 0.900 20 N -0.713 5.713 21 C 0.515 3.485 22 O -0.530 6.530 23 C -0.071 4.071 24 C -0.164 4.164 25 C -0.199 4.199 26 C -0.044 4.044 27 O -0.178 6.178 28 C -0.028 4.028 29 C -0.134 4.134 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.347 0.653 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.401 0.599 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.147 0.853 43 H 0.202 0.798 44 H 0.199 0.801 45 H 0.090 0.910 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.621 -28.049 1.612 29.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.299 5.299 14 C -0.061 4.061 15 C -0.123 4.123 16 H 0.108 0.892 17 C -0.179 4.179 18 C 0.010 3.990 19 H 0.118 0.882 20 N -0.365 5.365 21 C 0.301 3.699 22 O -0.406 6.406 23 C -0.111 4.111 24 C -0.165 4.165 25 C -0.218 4.218 26 C -0.111 4.111 27 O -0.073 6.073 28 C -0.096 4.096 29 C -0.173 4.173 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.166 0.834 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.235 0.765 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.165 0.835 43 H 0.218 0.782 44 H 0.216 0.784 45 H 0.109 0.891 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.162 -28.470 0.052 29.617 hybrid contribution -0.532 1.430 1.363 2.046 sum 7.630 -27.041 1.415 28.132 Atomic orbital electron populations 1.69604 1.05931 1.28252 1.50559 1.25259 0.95634 0.99707 0.97308 0.85911 0.78753 0.80452 0.79061 1.20976 1.19938 1.19892 1.19660 0.93355 0.82284 1.47719 0.87988 1.41858 1.09189 1.04605 1.64400 1.19830 0.88392 0.84746 0.84423 1.90517 1.13785 1.87087 1.55411 1.21671 0.94391 0.91064 1.01099 1.60067 1.18787 0.99917 1.51176 1.21973 0.95117 0.88762 1.00267 1.22553 0.98367 0.93152 0.98232 0.89241 1.23358 0.99097 0.96122 0.99328 1.21891 0.84216 0.96425 0.96437 0.88197 1.45691 1.22301 1.45913 1.22582 1.20610 0.85258 0.78423 0.85607 1.90727 1.72981 1.56394 1.20452 1.19995 0.93975 0.99189 0.97957 1.19770 1.02042 0.93769 1.00960 1.21697 1.01571 0.99574 0.98926 1.23975 1.00729 0.85486 1.00898 1.84059 1.46721 1.36917 1.39605 1.23766 0.98253 0.93752 0.93853 1.23369 1.02789 0.94237 0.96908 0.91832 0.77466 0.94003 0.89689 0.83369 0.95549 0.90970 0.91042 0.88668 0.76466 0.87703 0.88022 0.83529 0.78163 0.78409 0.89108 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.44 9.68 -14.94 -0.14 -8.58 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 10 C 0.44 10.46 7.82 -10.99 -0.09 10.37 16 11 O -0.58 -15.93 15.78 5.55 0.09 -15.85 16 12 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 13 N -0.67 -10.56 6.13 -115.05 -0.70 -11.26 16 14 C 0.07 0.79 5.52 -3.83 -0.02 0.77 16 15 C -0.10 -0.98 3.78 -89.81 -0.34 -1.32 16 16 H 0.09 0.83 8.13 -51.93 -0.42 0.41 16 17 C -0.14 -1.04 7.39 -25.92 -0.19 -1.23 16 18 C 0.12 1.04 4.32 -67.12 -0.29 0.75 16 19 H 0.10 1.05 7.47 -51.93 -0.39 0.66 16 20 N -0.71 -5.56 5.26 -53.02 -0.28 -5.84 16 21 C 0.51 4.97 7.82 -10.99 -0.09 4.88 16 22 O -0.53 -7.51 15.64 5.56 0.09 -7.42 16 23 C -0.07 -0.47 6.22 -29.04 -0.18 -0.65 16 24 C -0.16 -1.44 4.66 -104.74 -0.49 -1.93 16 25 C -0.20 -1.77 10.87 -39.70 -0.43 -2.20 16 26 C -0.04 -0.35 12.09 29.42 0.36 0.01 16 27 O -0.18 -1.64 10.65 5.71 0.06 -1.58 16 28 C -0.03 -0.23 12.01 29.42 0.35 0.12 16 29 C -0.13 -1.40 7.43 -25.92 -0.19 -1.59 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.35 5.63 8.42 -39.29 -0.33 5.30 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.82 7.84 -51.93 -0.41 0.42 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 39 H 0.40 2.10 8.70 -40.82 -0.36 1.75 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.20 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.20 1.00 8.06 -52.48 -0.42 0.57 16 45 H 0.09 0.96 7.90 -51.93 -0.41 0.55 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 395.03 15.07 5.95 5.95 Total: -1.00 -35.81 395.03 -7.82 -43.62 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -6.80 Total: 13.81 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.87 Total: 0.77 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.32 Total: -55.38 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: 0.24 Total: -24.85 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.81 -7.82 -43.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700635632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.128 kcal (2) G-P(sol) polarization free energy of solvation -35.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds