Wall clock time and date at job start Tue Mar 31 2020 18:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99666 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00326 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99885 * 3 2 1 7 7 C 1.38951 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99421 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00123 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00229 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99772 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46994 * 179.97438 * 12 10 9 14 14 C 1.46902 * 111.00336 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.47468 * 180.02562 * 14 13 12 16 16 H 1.09000 * 112.84907 * 43.80506 * 15 14 13 17 17 C 1.53774 * 113.61770 * 175.00022 * 15 14 13 18 18 C 1.53776 * 87.08242 * 139.98220 * 17 15 14 19 19 H 1.08997 * 113.61486 * 220.01904 * 18 17 15 20 20 N 1.46505 * 113.61396 * 89.12003 * 18 17 15 21 21 C 1.34777 * 119.99855 * 154.99938 * 20 18 17 22 22 O 1.21282 * 120.00237 * 359.97438 * 21 20 18 23 23 C 1.50696 * 119.99695 * 179.97438 * 21 20 18 24 24 C 1.50702 * 109.47250 * 180.02562 * 23 21 20 25 25 C 1.41379 * 126.58128 * 89.99318 * 24 23 21 26 26 C 1.34519 * 106.83917 * 179.97438 * 25 24 23 27 27 O 1.34305 * 108.41952 * 0.02562 * 26 25 24 28 28 C 1.34299 * 109.47780 * 359.76965 * 27 26 25 29 29 C 1.53778 * 87.08165 * 334.56674 * 18 17 15 30 30 H 0.96996 * 120.00340 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00144 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47517 * 299.99470 * 12 10 9 33 33 H 1.09007 * 109.47528 * 60.00096 * 12 10 9 34 34 H 1.00902 * 110.99925 * 56.04620 * 13 12 10 35 35 H 1.09006 * 109.47085 * 300.00434 * 14 13 12 36 36 H 1.09001 * 109.46944 * 60.00089 * 14 13 12 37 37 H 1.09003 * 113.61741 * 254.53687 * 17 15 14 38 38 H 1.09003 * 113.61361 * 25.43509 * 17 15 14 39 39 H 0.96998 * 119.99899 * 334.99951 * 20 18 17 40 40 H 1.09001 * 109.46897 * 299.99603 * 23 21 20 41 41 H 1.08992 * 109.47673 * 59.99854 * 23 21 20 42 42 H 1.07999 * 126.58159 * 359.93894 * 25 24 23 43 43 H 1.07996 * 125.78930 * 180.02562 * 26 25 24 44 44 H 1.08003 * 125.79306 * 180.23588 * 28 27 26 45 45 H 1.08994 * 113.61504 * 270.88375 * 29 18 17 46 46 H 1.09005 * 113.61137 * 139.98096 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1018 1.6965 1.2124 6 1 3.1018 1.6964 -1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1984 -5.9795 0.0027 14 6 1.4982 -7.2709 0.0039 15 6 2.5231 -8.4068 0.0050 16 1 3.3448 -8.2348 0.7002 17 6 1.8936 -9.8043 0.1291 18 6 2.9322 -10.2775 -0.9015 19 1 2.5324 -10.9785 -1.6342 20 7 4.1883 -10.7344 -0.3016 21 6 4.9689 -11.6139 -0.9601 22 8 4.6314 -12.0273 -2.0492 23 6 6.2612 -12.0834 -0.3433 24 6 6.9391 -13.0544 -1.2753 25 6 7.8677 -12.7368 -2.2930 26 6 8.2178 -13.8970 -2.8769 27 8 7.5538 -14.8946 -2.2706 28 6 6.7804 -14.3900 -1.2954 29 6 2.9814 -8.8244 -1.4023 30 1 -0.4850 0.8400 0.0004 31 1 0.3534 -2.3907 -0.0002 32 1 0.6169 -4.9202 0.8919 33 1 0.6174 -4.9213 -0.8881 34 1 2.8333 -5.9121 0.7840 35 1 0.8735 -7.3447 0.8941 36 1 0.8730 -7.3460 -0.8859 37 1 2.0194 -10.2541 1.1140 38 1 0.8663 -9.8541 -0.2319 39 1 4.4580 -10.4040 0.5696 40 1 6.9144 -11.2276 -0.1728 41 1 6.0526 -12.5761 0.6063 42 1 8.2266 -11.7518 -2.5523 43 1 8.9146 -14.0075 -3.6946 44 1 6.1383 -14.9596 -0.6399 45 1 2.2516 -8.6063 -2.1818 46 1 3.9856 -8.4830 -1.6537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700635632.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:58 Heat of formation + Delta-G solvation = -64.885768 kcal Electronic energy + Delta-G solvation = -26950.177439 eV Core-core repulsion = 22840.910047 eV Total energy + Delta-G solvation = -4109.267392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.43357 -41.21099 -40.15291 -39.41789 -36.54620 -35.76884 -34.91908 -34.12325 -33.25499 -31.31378 -29.88395 -28.68065 -27.16431 -26.57509 -25.27538 -23.14306 -22.51594 -22.38636 -21.14750 -20.97157 -20.19001 -19.82791 -18.43905 -18.15874 -17.75296 -16.97162 -16.89822 -16.69522 -16.47651 -16.29703 -16.01180 -15.73454 -15.52317 -15.32483 -15.16309 -14.72202 -14.47631 -14.12089 -14.05800 -13.67301 -13.52294 -13.43917 -13.31814 -13.26573 -13.02076 -12.87668 -12.58049 -12.43634 -12.39792 -12.12702 -11.79994 -11.50451 -11.38619 -11.13711 -11.07866 -10.52356 -10.33243 -10.01768 -9.98569 -9.41823 -9.24478 -8.46617 -5.95625 0.88981 1.39881 1.41833 1.52792 1.59097 1.66387 2.05540 2.29356 2.29856 2.40128 2.94213 3.20633 3.48978 3.61713 3.78779 3.83139 3.90874 3.96918 4.04832 4.07434 4.18322 4.32641 4.47026 4.55700 4.56261 4.57000 4.64472 4.67184 4.76952 4.80125 4.87678 4.89986 4.95295 5.11318 5.14974 5.24290 5.31000 5.33290 5.40477 5.59747 5.70940 5.91123 6.13949 6.20976 6.47058 6.60264 6.60990 7.12398 7.31650 7.56296 8.11708 8.70473 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.001518 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.969699 B =18443.969924 C =19340.581552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.065 3.935 13 N -0.684 5.684 14 C 0.069 3.931 15 C -0.099 4.099 16 H 0.094 0.906 17 C -0.119 4.119 18 C 0.117 3.883 19 H 0.083 0.917 20 N -0.702 5.702 21 C 0.512 3.488 22 O -0.582 6.582 23 C -0.064 4.064 24 C -0.183 4.183 25 C -0.226 4.226 26 C -0.048 4.048 27 O -0.193 6.193 28 C -0.039 4.039 29 C -0.142 4.142 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.343 0.657 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.416 0.584 40 H 0.120 0.880 41 H 0.135 0.865 42 H 0.150 0.850 43 H 0.230 0.770 44 H 0.225 0.775 45 H 0.085 0.915 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.046 -28.690 2.979 29.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.067 4.067 13 N -0.316 5.316 14 C -0.059 4.059 15 C -0.118 4.118 16 H 0.112 0.888 17 C -0.157 4.157 18 C 0.011 3.989 19 H 0.101 0.899 20 N -0.353 5.353 21 C 0.300 3.700 22 O -0.461 6.461 23 C -0.104 4.104 24 C -0.185 4.185 25 C -0.245 4.245 26 C -0.115 4.115 27 O -0.088 6.088 28 C -0.106 4.106 29 C -0.181 4.181 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.162 0.838 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.253 0.747 40 H 0.138 0.862 41 H 0.153 0.847 42 H 0.168 0.832 43 H 0.246 0.754 44 H 0.241 0.759 45 H 0.103 0.897 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.560 -29.115 1.456 30.115 hybrid contribution -0.341 1.599 0.898 1.865 sum 7.219 -27.516 2.354 28.544 Atomic orbital electron populations 1.69664 1.06815 1.29376 1.50190 1.26038 0.96550 1.02394 0.96200 0.84985 0.77762 0.76635 0.78925 1.19428 1.19599 1.19873 1.19646 0.92735 0.84119 1.50162 0.90346 1.41933 1.09327 1.04726 1.65056 1.20939 0.88283 0.86238 0.82142 1.90484 1.15903 1.87995 1.56688 1.21525 0.94083 0.88203 1.02924 1.60077 1.19130 1.01064 1.51366 1.22072 0.95590 0.87056 1.01176 1.22521 0.98273 0.93603 0.97374 0.88808 1.23259 0.98843 0.93849 0.99768 1.21800 0.85228 0.94952 0.96947 0.89864 1.45615 1.21672 1.45118 1.22940 1.21171 0.85964 0.77895 0.84935 1.90706 1.74304 1.58364 1.22773 1.20063 0.92229 0.99582 0.98515 1.20139 1.02306 0.94552 1.01485 1.21994 1.02476 1.00203 0.99796 1.24583 1.00637 0.85076 1.01169 1.84055 1.47127 1.37579 1.40078 1.24355 0.98232 0.94132 0.93874 1.23397 1.01380 0.95657 0.97661 0.91279 0.76970 0.91520 0.88168 0.83810 0.93746 0.90707 0.88938 0.87659 0.74678 0.86200 0.84685 0.83187 0.75382 0.75859 0.89685 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.59 13.05 21.66 0.28 -49.30 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.34 -19.25 9.68 84.04 0.81 -18.44 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -29.53 5.29 -306.99 -1.62 -31.15 16 10 C 0.44 20.81 7.82 87.66 0.69 21.50 16 11 O -0.62 -34.74 15.78 -3.07 -0.05 -34.79 16 12 C 0.07 2.20 6.17 85.56 0.53 2.72 16 13 N -0.68 -20.73 6.13 -517.92 -3.17 -23.91 16 14 C 0.07 1.44 5.52 86.30 0.48 1.92 16 15 C -0.10 -1.67 3.78 -10.27 -0.04 -1.71 16 16 H 0.09 1.53 8.13 -2.39 -0.02 1.51 16 17 C -0.12 -1.42 7.39 31.12 0.23 -1.19 16 18 C 0.12 1.96 4.32 45.51 0.20 2.16 16 19 H 0.08 1.73 7.47 -2.39 -0.02 1.71 16 20 N -0.70 -9.91 5.26 -440.05 -2.32 -12.22 16 21 C 0.51 9.50 7.82 87.66 0.69 10.18 16 22 O -0.58 -16.77 15.64 -3.03 -0.05 -16.82 16 23 C -0.06 -0.75 6.22 29.10 0.18 -0.57 16 24 C -0.18 -3.11 4.66 -19.94 -0.09 -3.20 16 25 C -0.23 -4.03 10.87 22.19 0.24 -3.79 16 26 C -0.05 -0.75 12.09 66.97 0.81 0.06 16 27 O -0.19 -3.51 10.65 -2.47 -0.03 -3.54 16 28 C -0.04 -0.61 12.01 66.97 0.80 0.19 16 29 C -0.14 -2.90 7.43 31.12 0.23 -2.67 16 30 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.10 3.10 8.14 -2.38 -0.02 3.09 16 34 H 0.34 10.80 8.42 -89.69 -0.76 10.05 16 35 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.07 1.53 7.84 -2.39 -0.02 1.51 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.11 1.11 8.10 -2.39 -0.02 1.09 16 39 H 0.42 3.35 8.70 -92.71 -0.81 2.54 16 40 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 43 H 0.23 1.82 8.06 -2.91 -0.02 1.79 16 44 H 0.23 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.08 1.81 7.90 -2.39 -0.02 1.79 16 46 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -79.62 395.03 0.03 -79.59 By element: Atomic # 1 Polarization: 41.45 SS G_CDS: -1.27 Total: 40.18 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 6.22 Total: 7.00 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -6.83 Total: -116.58 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: -0.12 Total: -55.14 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -79.62 0.03 -79.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700635632.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.703 kcal (2) G-P(sol) polarization free energy of solvation -79.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds