Wall clock time and date at job start Tue Mar 31 2020 18:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21520 * 119.99912 * 0.02562 * 16 15 14 18 18 C 1.48159 * 120.00030 * 179.97438 * 16 15 14 19 19 C 1.39391 * 120.66453 * 359.72476 * 18 16 15 20 20 C 1.38868 * 118.61403 * 179.76347 * 19 18 16 21 21 O 1.35691 * 119.69401 * 180.34214 * 20 19 18 22 22 N 1.31837 * 120.60587 * 0.63436 * 20 19 18 23 23 C 1.32733 * 122.68824 * 359.73506 * 22 20 19 24 24 C 1.37457 * 120.24074 * 359.76151 * 23 22 20 25 25 C 1.50494 * 122.88480 * 180.73117 * 24 23 22 26 26 C 1.52758 * 110.58216 * 342.38119 * 25 24 23 27 27 C 1.53325 * 108.35121 * 50.78906 * 26 25 24 28 28 C 1.50758 * 117.45549 * 179.63753 * 23 22 20 29 29 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 32 32 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 33 33 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 35 35 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 36 36 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 37 37 H 1.08003 * 120.68954 * 0.02562 * 19 18 16 38 38 H 0.96699 * 114.00125 * 270.28546 * 21 20 19 39 39 H 1.08993 * 109.25517 * 102.66574 * 25 24 23 40 40 H 1.08997 * 109.25590 * 222.10120 * 25 24 23 41 41 H 1.09002 * 109.69031 * 291.07894 * 26 25 24 42 42 H 1.09001 * 109.68992 * 170.50904 * 26 25 24 43 43 H 1.09002 * 109.67668 * 170.47582 * 27 26 25 44 44 H 1.09004 * 109.66915 * 49.95104 * 27 26 25 45 45 H 1.09002 * 109.25333 * 282.31571 * 28 23 22 46 46 H 1.09003 * 109.25105 * 41.77836 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3870 -6.2307 2.2189 18 6 -0.4906 -4.7355 4.0150 19 6 -0.1006 -3.5060 4.5434 20 6 -0.5475 -3.1548 5.8105 21 8 -0.1869 -1.9601 6.3432 22 7 -1.3141 -3.9740 6.5028 23 6 -1.7017 -5.1561 6.0399 24 6 -1.3100 -5.5724 4.7898 25 6 -1.7274 -6.8926 4.2002 26 6 -2.2332 -7.8328 5.2928 27 6 -3.2811 -7.0853 6.1259 28 6 -2.5714 -6.0019 6.9350 29 1 -0.4851 -0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0015 31 1 2.9641 -3.2122 -1.9146 32 1 3.0368 -4.9285 -1.4486 33 1 1.3708 -4.5275 -3.1130 34 1 0.3130 -4.9200 -0.0361 35 1 1.7583 -5.6761 0.6765 36 1 1.0152 -3.4802 2.2898 37 1 0.5323 -2.8385 3.9774 38 1 0.6359 -1.9879 6.8504 39 1 -2.5220 -6.7263 3.4729 40 1 -0.8732 -7.3492 3.7004 41 1 -1.4029 -8.1339 5.9316 42 1 -2.6859 -8.7141 4.8383 43 1 -3.7778 -7.7817 6.8015 44 1 -4.0166 -6.6270 5.4648 45 1 -1.9516 -6.4716 7.6988 46 1 -3.3158 -5.3677 7.4163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700812540.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:41 Heat of formation + Delta-G solvation = -83.722422 kcal Electronic energy + Delta-G solvation = -29431.933089 eV Core-core repulsion = 25321.848878 eV Total energy + Delta-G solvation = -4110.084211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.19857 -39.29683 -38.03036 -37.26180 -35.75645 -35.11311 -33.87716 -33.37771 -31.52335 -30.00746 -29.69872 -28.12389 -25.95442 -24.40588 -23.57181 -23.44762 -22.96356 -20.81544 -20.31010 -19.74296 -18.65670 -17.76783 -17.28167 -16.96718 -16.72946 -15.84400 -15.66059 -15.47821 -15.17551 -14.73936 -14.47623 -14.33904 -14.11915 -13.85206 -13.74375 -13.54313 -13.46570 -13.33125 -12.99072 -12.82472 -12.41673 -11.94771 -11.88542 -11.75644 -11.55619 -11.05226 -11.01701 -10.91323 -10.79494 -10.78838 -10.47426 -10.10231 -10.07937 -9.83058 -9.57130 -9.25656 -9.20892 -9.02919 -8.83423 -8.64018 -7.15950 -6.17807 -3.20549 0.61446 0.87372 2.85306 3.23682 3.40832 3.46011 3.50347 3.64639 3.65848 4.26538 4.51401 4.57744 4.64940 4.71194 4.77939 4.80048 4.84818 5.03015 5.24517 5.25964 5.32976 5.35772 5.43467 5.44251 5.49376 5.56524 5.67709 5.74100 5.76982 5.82483 5.87576 5.88815 5.90862 6.01722 6.15084 6.17939 6.28992 6.33798 6.45060 6.57225 6.69754 7.40201 7.67766 7.69046 7.78221 8.07734 8.29233 8.67412 9.10937 9.97968 10.12831 11.29407 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011841 B = 0.003553 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.095870 B = 7878.615085 C = 9766.302429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.038 4.038 3 Si 1.081 2.919 4 H -0.294 1.294 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.343 4.343 8 H 0.065 0.935 9 N -0.725 5.725 10 C 0.171 3.829 11 H 0.067 0.933 12 C 0.060 3.940 13 O -0.562 6.562 14 C 0.117 3.883 15 N -0.704 5.704 16 C 0.554 3.446 17 O -0.533 6.533 18 C -0.076 4.076 19 C -0.150 4.150 20 C 0.310 3.690 21 O -0.476 6.476 22 N -0.493 5.493 23 C 0.147 3.853 24 C -0.079 4.079 25 C -0.082 4.082 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.065 4.065 29 H 0.257 0.743 30 H 0.372 0.628 31 H 0.050 0.950 32 H 0.028 0.972 33 H 0.365 0.635 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.409 0.591 37 H 0.150 0.850 38 H 0.399 0.601 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.608 -14.700 10.982 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.237 4.237 3 Si 0.912 3.088 4 H -0.222 1.222 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.474 4.474 8 H 0.083 0.917 9 N -0.368 5.368 10 C 0.060 3.940 11 H 0.085 0.915 12 C -0.022 4.022 13 O -0.366 6.366 14 C -0.007 4.007 15 N -0.355 5.355 16 C 0.340 3.660 17 O -0.412 6.412 18 C -0.087 4.087 19 C -0.172 4.172 20 C 0.129 3.871 21 O -0.282 6.282 22 N -0.213 5.213 23 C 0.011 3.989 24 C -0.082 4.082 25 C -0.119 4.119 26 C -0.161 4.161 27 C -0.160 4.160 28 C -0.102 4.102 29 H 0.069 0.931 30 H 0.205 0.795 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.210 0.790 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.246 0.754 37 H 0.167 0.833 38 H 0.257 0.743 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.553 -13.078 11.760 17.597 hybrid contribution 1.231 -1.314 -1.117 2.119 sum 0.678 -14.392 10.643 17.913 Atomic orbital electron populations 1.70840 1.06078 1.28742 1.52311 1.25753 0.96983 1.00946 0.99972 0.83222 0.73850 0.75441 0.76284 1.22206 1.22229 1.21378 1.20023 0.91900 0.85646 1.49826 0.91721 1.42384 1.05061 1.00054 1.89298 1.20530 0.94954 0.86470 0.92067 0.91523 1.23010 0.86455 0.97413 0.95287 1.86545 1.32177 1.92029 1.25821 1.21643 0.99795 0.97224 0.82050 1.45961 1.50139 1.21612 1.17827 1.18053 0.79009 0.84520 0.84399 1.90696 1.56856 1.21982 1.71693 1.20307 0.98587 0.94504 0.95253 1.22428 1.01344 0.96289 0.97106 1.18785 0.93487 0.85496 0.89313 1.84859 1.46528 1.24880 1.71952 1.66819 1.12265 1.03702 1.38507 1.20726 0.96027 0.90045 0.92098 1.20588 0.96121 0.97714 0.93736 1.20746 1.03339 0.90625 0.97154 1.21675 0.98659 0.98269 0.97545 1.21613 0.98111 0.97212 0.99021 1.20371 0.97553 0.95795 0.96521 0.93119 0.79459 0.93169 0.95361 0.78970 0.90320 0.91633 0.75372 0.83258 0.74327 0.89840 0.87436 0.91710 0.91021 0.90845 0.91312 0.89720 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.21 13.70 55.49 0.76 -27.45 16 2 C -0.04 -1.04 5.50 -17.43 -0.10 -1.14 16 3 Si 1.08 25.07 29.92 -169.99 -5.09 19.98 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.30 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.34 -8.98 9.93 -15.06 -0.15 -9.13 16 8 H 0.06 1.66 7.83 -52.48 -0.41 1.24 16 9 N -0.72 -16.88 4.51 -53.43 -0.24 -17.12 16 10 C 0.17 3.16 2.84 -67.93 -0.19 2.97 16 11 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 12 C 0.06 1.01 6.86 37.16 0.25 1.27 16 13 O -0.56 -9.75 12.64 -35.23 -0.45 -10.19 16 14 C 0.12 1.99 5.12 -4.04 -0.02 1.97 16 15 N -0.70 -11.71 5.34 -61.15 -0.33 -12.03 16 16 C 0.55 9.21 7.74 -12.19 -0.09 9.11 16 17 O -0.53 -9.58 13.21 5.35 0.07 -9.51 16 18 C -0.08 -1.15 5.91 -104.57 -0.62 -1.77 16 19 C -0.15 -2.21 9.55 -38.92 -0.37 -2.58 16 20 C 0.31 4.54 7.75 -17.32 -0.13 4.41 16 21 O -0.48 -6.32 13.56 -18.78 -0.25 -6.57 16 22 N -0.49 -7.22 10.18 -9.61 -0.10 -7.32 16 23 C 0.15 1.94 6.62 -82.46 -0.55 1.39 16 24 C -0.08 -1.09 5.77 -104.18 -0.60 -1.69 16 25 C -0.08 -1.01 4.29 -28.11 -0.12 -1.13 16 26 C -0.12 -1.13 5.99 -26.69 -0.16 -1.29 16 27 C -0.12 -1.02 5.97 -26.71 -0.16 -1.18 16 28 C -0.06 -0.63 5.91 -28.00 -0.17 -0.79 16 29 H 0.26 7.77 6.77 -40.82 -0.28 7.49 16 30 H 0.37 9.43 6.63 -40.82 -0.27 9.16 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.37 4.54 9.12 45.56 0.42 4.95 16 34 H 0.08 1.51 7.39 -51.93 -0.38 1.12 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.41 6.90 6.26 -40.82 -0.26 6.65 16 37 H 0.15 2.15 6.51 -52.48 -0.34 1.81 16 38 H 0.40 3.09 9.06 45.56 0.41 3.50 16 39 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 40 H 0.11 1.49 5.91 -51.93 -0.31 1.18 16 41 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.62 8.10 -51.93 -0.42 0.19 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -34.06 374.99 -8.00 -42.05 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -4.85 Total: 22.10 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -3.17 Total: 0.41 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: 0.09 Total: -63.92 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.63 Total: -26.28 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.09 Total: 19.98 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.06 -8.00 -42.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700812540.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.668 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds