Wall clock time and date at job start Tue Mar 31 2020 18:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21520 * 119.99912 * 0.02562 * 16 15 14 18 18 C 1.48159 * 120.00030 * 179.97438 * 16 15 14 19 19 C 1.39391 * 120.66453 * 359.72476 * 18 16 15 20 20 C 1.38868 * 118.61403 * 179.76347 * 19 18 16 21 21 O 1.35691 * 119.69401 * 180.34214 * 20 19 18 22 22 N 1.31837 * 120.60587 * 0.63436 * 20 19 18 23 23 C 1.32733 * 122.68824 * 359.73506 * 22 20 19 24 24 C 1.37457 * 120.24074 * 359.76151 * 23 22 20 25 25 C 1.50494 * 122.88480 * 180.73117 * 24 23 22 26 26 C 1.52758 * 110.58216 * 342.38119 * 25 24 23 27 27 C 1.53325 * 108.35121 * 50.78906 * 26 25 24 28 28 C 1.50758 * 117.45549 * 179.63753 * 23 22 20 29 29 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 32 32 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 33 33 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 35 35 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 36 36 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 37 37 H 1.08003 * 120.68954 * 0.02562 * 19 18 16 38 38 H 0.96699 * 114.00125 * 270.28546 * 21 20 19 39 39 H 1.08993 * 109.25517 * 102.66574 * 25 24 23 40 40 H 1.08997 * 109.25590 * 222.10120 * 25 24 23 41 41 H 1.09002 * 109.69031 * 291.07894 * 26 25 24 42 42 H 1.09001 * 109.68992 * 170.50904 * 26 25 24 43 43 H 1.09002 * 109.67668 * 170.47582 * 27 26 25 44 44 H 1.09004 * 109.66915 * 49.95104 * 27 26 25 45 45 H 1.09002 * 109.25333 * 282.31571 * 28 23 22 46 46 H 1.09003 * 109.25105 * 41.77836 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3870 -6.2307 2.2189 18 6 -0.4906 -4.7355 4.0150 19 6 -0.1006 -3.5060 4.5434 20 6 -0.5475 -3.1548 5.8105 21 8 -0.1869 -1.9601 6.3432 22 7 -1.3141 -3.9740 6.5028 23 6 -1.7017 -5.1561 6.0399 24 6 -1.3100 -5.5724 4.7898 25 6 -1.7274 -6.8926 4.2002 26 6 -2.2332 -7.8328 5.2928 27 6 -3.2811 -7.0853 6.1259 28 6 -2.5714 -6.0019 6.9350 29 1 -0.4851 -0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0015 31 1 2.9641 -3.2122 -1.9146 32 1 3.0368 -4.9285 -1.4486 33 1 1.3708 -4.5275 -3.1130 34 1 0.3130 -4.9200 -0.0361 35 1 1.7583 -5.6761 0.6765 36 1 1.0152 -3.4802 2.2898 37 1 0.5323 -2.8385 3.9774 38 1 0.6359 -1.9879 6.8504 39 1 -2.5220 -6.7263 3.4729 40 1 -0.8732 -7.3492 3.7004 41 1 -1.4029 -8.1339 5.9316 42 1 -2.6859 -8.7141 4.8383 43 1 -3.7778 -7.7817 6.8015 44 1 -4.0166 -6.6270 5.4648 45 1 -1.9516 -6.4716 7.6988 46 1 -3.3158 -5.3677 7.4163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700812540.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:40 Heat of formation + Delta-G solvation = -113.414192 kcal Electronic energy + Delta-G solvation = -29433.220621 eV Core-core repulsion = 25321.848878 eV Total energy + Delta-G solvation = -4111.371742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.31147 -40.59151 -39.07604 -38.67218 -36.74942 -36.54824 -35.53092 -34.52892 -33.17925 -31.05706 -30.66163 -29.81466 -27.26711 -25.71386 -25.33227 -24.41896 -24.04999 -22.02585 -21.74789 -20.72532 -19.79740 -19.54158 -18.51176 -18.20264 -18.16303 -17.15011 -16.88104 -16.57543 -16.50750 -16.08413 -15.92007 -15.53820 -15.38556 -15.27310 -15.01153 -14.82927 -14.78990 -14.46501 -14.06516 -13.86021 -13.51940 -13.37231 -13.09336 -12.89764 -12.72493 -12.65899 -12.56745 -12.11822 -11.90752 -11.88465 -11.78838 -11.59098 -11.30181 -11.27163 -11.00680 -10.96995 -10.79743 -10.35608 -10.17652 -9.72815 -9.13628 -8.34626 -5.30650 -0.55680 -0.20515 1.59649 1.61627 1.69508 1.82586 1.94130 2.36444 2.53587 2.71644 3.25406 3.37806 3.44730 3.50074 3.60451 3.69252 3.71815 3.85898 3.97543 4.03129 4.10383 4.29730 4.31638 4.39453 4.44493 4.44659 4.51369 4.61177 4.70031 4.71815 4.74620 4.87973 5.00429 5.02224 5.09699 5.12959 5.20412 5.29885 5.34997 5.43938 5.50345 5.62274 6.31264 6.50128 6.50412 6.73769 6.93365 6.97324 7.08556 7.97762 8.12248 9.15637 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011841 B = 0.003553 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.095870 B = 7878.615085 C = 9766.302429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.100 4.100 3 Si 1.126 2.874 4 H -0.284 1.284 5 H -0.272 1.272 6 H -0.302 1.302 7 C -0.326 4.326 8 H 0.073 0.927 9 N -0.735 5.735 10 C 0.165 3.835 11 H 0.078 0.922 12 C 0.066 3.934 13 O -0.585 6.585 14 C 0.129 3.871 15 N -0.704 5.704 16 C 0.553 3.447 17 O -0.549 6.549 18 C -0.089 4.089 19 C -0.159 4.159 20 C 0.306 3.694 21 O -0.487 6.487 22 N -0.504 5.504 23 C 0.148 3.852 24 C -0.086 4.086 25 C -0.078 4.078 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.064 4.064 29 H 0.242 0.758 30 H 0.358 0.642 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.387 0.613 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.407 0.593 37 H 0.146 0.854 38 H 0.421 0.579 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.104 0.896 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 -16.157 12.179 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.292 4.292 3 Si 0.952 3.048 4 H -0.211 1.211 5 H -0.197 1.197 6 H -0.229 1.229 7 C -0.457 4.457 8 H 0.091 0.909 9 N -0.377 5.377 10 C 0.056 3.944 11 H 0.096 0.904 12 C -0.015 4.015 13 O -0.392 6.392 14 C 0.005 3.995 15 N -0.355 5.355 16 C 0.341 3.659 17 O -0.429 6.429 18 C -0.100 4.100 19 C -0.181 4.181 20 C 0.126 3.874 21 O -0.297 6.297 22 N -0.224 5.224 23 C 0.012 3.988 24 C -0.089 4.089 25 C -0.115 4.115 26 C -0.156 4.156 27 C -0.154 4.154 28 C -0.102 4.102 29 H 0.052 0.948 30 H 0.189 0.811 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.244 0.756 37 H 0.164 0.836 38 H 0.282 0.718 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.122 0.878 44 H 0.079 0.921 45 H 0.122 0.878 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.416 -14.588 12.950 19.511 hybrid contribution 0.993 -0.968 -1.490 2.035 sum 1.409 -15.556 11.460 19.373 Atomic orbital electron populations 1.70965 1.07410 1.27790 1.56076 1.27028 0.96932 1.04485 1.00751 0.82630 0.73543 0.71834 0.76775 1.21122 1.19703 1.22868 1.20358 0.92348 0.86537 1.46468 0.90875 1.42506 1.04498 1.01134 1.89544 1.20802 0.94998 0.84863 0.93709 0.90410 1.22838 0.86531 0.98696 0.93453 1.86500 1.32781 1.92179 1.27696 1.21491 0.98813 0.97483 0.81726 1.45950 1.50326 1.21549 1.17708 1.18277 0.78577 0.84202 0.84883 1.90687 1.57371 1.22593 1.72253 1.20313 0.99657 0.95192 0.94809 1.22397 1.01924 0.96294 0.97445 1.18879 0.93464 0.85776 0.89322 1.84799 1.48087 1.24427 1.72363 1.66945 1.12541 1.04289 1.38672 1.21360 0.95442 0.89854 0.92131 1.20845 0.95833 0.98162 0.94025 1.20688 1.02250 0.90566 0.98008 1.21669 0.99274 0.97932 0.96690 1.21621 0.97549 0.97135 0.99106 1.20538 0.97419 0.95798 0.96406 0.94795 0.81055 0.94714 0.91258 0.76495 0.92563 0.89481 0.75571 0.83604 0.71752 0.91170 0.89112 0.90785 0.89486 0.87834 0.92118 0.87752 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.38 13.70 21.65 0.30 -60.08 16 2 C -0.10 -5.60 5.50 84.86 0.47 -5.14 16 3 Si 1.13 50.56 29.92 68.60 2.05 52.61 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 7 C -0.33 -17.00 9.93 84.03 0.83 -16.16 16 8 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 9 N -0.73 -34.52 4.51 -322.94 -1.46 -35.97 16 10 C 0.17 5.98 2.84 44.99 0.13 6.10 16 11 H 0.08 2.65 8.08 -2.38 -0.02 2.63 16 12 C 0.07 2.10 6.86 71.98 0.49 2.59 16 13 O -0.58 -19.68 12.64 -148.98 -1.88 -21.57 16 14 C 0.13 4.35 5.12 86.38 0.44 4.79 16 15 N -0.70 -23.81 5.34 -465.66 -2.49 -26.30 16 16 C 0.55 18.80 7.74 86.88 0.67 19.47 16 17 O -0.55 -20.05 13.21 -3.78 -0.05 -20.10 16 18 C -0.09 -2.77 5.91 -19.83 -0.12 -2.89 16 19 C -0.16 -4.80 9.55 22.70 0.22 -4.58 16 20 C 0.31 8.96 7.75 84.84 0.66 9.62 16 21 O -0.49 -12.78 13.56 -90.10 -1.22 -14.00 16 22 N -0.50 -14.41 10.18 -297.40 -3.03 -17.44 16 23 C 0.15 3.76 6.62 42.26 0.28 4.04 16 24 C -0.09 -2.36 5.77 -19.58 -0.11 -2.48 16 25 C -0.08 -1.90 4.29 29.70 0.13 -1.77 16 26 C -0.12 -1.90 5.99 30.62 0.18 -1.72 16 27 C -0.12 -1.63 5.97 30.61 0.18 -1.44 16 28 C -0.06 -1.09 5.91 29.77 0.18 -0.92 16 29 H 0.24 15.21 6.77 -92.71 -0.63 14.58 16 30 H 0.36 18.75 6.63 -92.71 -0.61 18.14 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.39 9.04 9.12 -74.06 -0.68 8.37 16 34 H 0.06 2.17 7.39 -2.39 -0.02 2.16 16 35 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.41 14.12 6.26 -92.71 -0.58 13.54 16 37 H 0.15 4.39 6.51 -2.91 -0.02 4.37 16 38 H 0.42 6.23 9.06 -74.06 -0.67 5.56 16 39 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 40 H 0.09 2.53 5.91 -2.39 -0.01 2.52 16 41 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.06 0.97 8.10 -2.38 -0.02 0.95 16 45 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -74.37 374.99 -4.48 -78.85 By element: Atomic # 1 Polarization: 55.80 SS G_CDS: -1.34 Total: 54.46 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 4.63 Total: 9.52 kcal Atomic # 7 Polarization: -133.11 SS G_CDS: -6.67 Total: -139.79 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -3.15 Total: -55.66 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.05 Total: 52.61 kcal Total: -74.37 -4.48 -78.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700812540.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.562 kcal (2) G-P(sol) polarization free energy of solvation -74.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds