Wall clock time and date at job start Tue Mar 31 2020 18:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 120.00337 * 2 1 4 4 H 1.48505 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46895 * 299.99763 * 3 2 1 6 6 H 1.48497 * 109.46964 * 59.99709 * 3 2 1 7 7 C 1.38956 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00089 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99776 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99750 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00117 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99940 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47012 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99908 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47145 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.52365 * 304.91738 * 15 14 13 17 17 C 1.53042 * 109.49840 * 184.83737 * 15 14 13 18 18 C 1.53039 * 109.53687 * 178.68316 * 17 15 14 19 19 C 1.53191 * 109.31529 * 61.36517 * 18 17 15 20 20 N 1.46925 * 108.77394 * 305.36097 * 19 18 17 21 21 C 1.34774 * 120.63395 * 233.58805 * 20 19 18 22 22 O 1.21691 * 120.00360 * 172.67130 * 21 20 19 23 23 C 1.46660 * 119.99721 * 352.67109 * 21 20 19 24 24 C 1.36543 * 125.98475 * 172.40283 * 23 21 20 25 25 C 1.40369 * 106.70660 * 179.97438 * 24 23 21 26 26 C 1.35133 * 107.11472 * 359.97438 * 25 24 23 27 27 O 1.33937 * 108.76695 * 359.75758 * 26 25 24 28 28 C 1.46929 * 118.73964 * 53.61080 * 20 19 18 29 29 H 0.97005 * 119.99353 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00480 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46772 * 60.00904 * 12 10 9 32 32 H 1.08999 * 109.47307 * 300.00467 * 12 10 9 33 33 H 1.00901 * 111.00160 * 56.05233 * 13 12 10 34 34 H 1.08998 * 109.47110 * 59.99509 * 14 13 12 35 35 H 1.09002 * 109.46762 * 299.99876 * 14 13 12 36 36 H 1.09005 * 109.45695 * 298.70298 * 17 15 14 37 37 H 1.08994 * 109.45870 * 58.66029 * 17 15 14 38 38 H 1.08997 * 109.49764 * 301.41185 * 18 17 15 39 39 H 1.09007 * 109.49427 * 181.31556 * 18 17 15 40 40 H 1.09001 * 109.58558 * 185.58006 * 19 18 17 41 41 H 1.08997 * 109.58677 * 65.14891 * 19 18 17 42 42 H 1.08000 * 126.65180 * 359.97438 * 24 23 21 43 43 H 1.08001 * 126.44319 * 179.97438 * 25 24 23 44 44 H 1.08001 * 125.61608 * 179.97438 * 26 25 24 45 45 H 1.08990 * 109.59129 * 186.60439 * 28 20 19 46 46 H 1.09005 * 109.70455 * 66.24525 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7083 1.3462 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5580 0.0011 12 6 1.2436 -4.8629 0.0022 13 7 2.1981 -5.9795 0.0027 14 6 1.4978 -7.2709 0.0026 15 6 2.5226 -8.4069 0.0038 16 1 3.2038 -8.2838 -0.8381 17 6 1.7975 -9.7491 -0.1179 18 6 2.8236 -10.8841 -0.1498 19 6 3.6217 -10.8826 1.1577 20 7 4.2041 -9.5481 1.3547 21 6 5.5263 -9.4008 1.5699 22 8 6.0179 -8.2879 1.5986 23 6 6.3728 -10.5817 1.7695 24 6 7.7358 -10.5873 1.8507 25 6 8.1230 -11.9227 2.0433 26 6 6.9936 -12.6642 2.0715 27 8 5.9408 -11.8518 1.9118 28 6 3.3174 -8.3772 1.3131 29 1 -0.4849 0.8401 -0.0004 30 1 0.3533 -2.3907 0.0016 31 1 0.6167 -4.9209 -0.8876 32 1 0.6172 -4.9205 0.8924 33 1 2.8330 -5.9122 0.7841 34 1 0.8731 -7.3454 -0.8875 35 1 0.8726 -7.3451 0.8925 36 1 1.1348 -9.8827 0.7372 37 1 1.2116 -9.7633 -1.0368 38 1 3.5020 -10.7377 -0.9903 39 1 2.3076 -11.8380 -0.2600 40 1 4.4186 -11.6241 1.1003 41 1 2.9593 -11.1187 1.9905 42 1 8.3894 -9.7305 1.7803 43 1 9.1336 -12.2888 2.1491 44 1 6.9474 -13.7350 2.2047 45 1 3.9133 -7.4658 1.3582 46 1 2.6300 -8.4065 2.1586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713222322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:30 Heat of formation + Delta-G solvation = -47.225570 kcal Electronic energy + Delta-G solvation = -28367.171714 eV Core-core repulsion = 24258.670126 eV Total energy + Delta-G solvation = -4108.501588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.09326 -40.24125 -38.36946 -37.82794 -35.62615 -33.90216 -33.55004 -32.96481 -31.60944 -31.11945 -30.20820 -27.31082 -26.11094 -25.09021 -23.62061 -22.99072 -22.15335 -21.78718 -20.66740 -19.87826 -19.17018 -17.98410 -17.79274 -17.06410 -16.68700 -16.43163 -15.92461 -15.54728 -15.08300 -14.77706 -14.72518 -14.46242 -14.31939 -13.86222 -13.70611 -13.60800 -13.48566 -13.24336 -13.14498 -13.06221 -12.93870 -12.80031 -12.13214 -11.63253 -11.50340 -11.47501 -11.34323 -11.06243 -10.97156 -10.82985 -10.64428 -10.42553 -10.32685 -10.29977 -10.17338 -9.47113 -9.14623 -8.81973 -8.40315 -8.00774 -7.90634 -6.37240 -3.77548 0.74921 2.01277 2.25675 2.76298 2.96464 3.20177 3.30361 3.38517 3.96458 4.09003 4.13642 4.30849 4.49511 4.54619 4.60041 4.63071 4.74416 4.77106 5.01605 5.08540 5.16934 5.24655 5.30036 5.33871 5.41591 5.43831 5.47343 5.49633 5.52789 5.67488 5.71920 5.78694 5.80269 5.87780 5.96710 6.01200 6.03942 6.20000 6.28897 6.33414 6.48630 7.07847 7.25990 7.60317 7.69546 7.82353 8.11900 8.66750 9.23209 9.59647 10.11621 10.80708 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.002084 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.941492 B =13432.057461 C =14738.652501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.020 3.980 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.566 5.566 10 C 0.441 3.559 11 O -0.580 6.580 12 C 0.051 3.949 13 N -0.671 5.671 14 C 0.067 3.933 15 C -0.099 4.099 16 H 0.088 0.912 17 C -0.114 4.114 18 C -0.133 4.133 19 C 0.096 3.904 20 N -0.602 5.602 21 C 0.598 3.402 22 O -0.509 6.509 23 C -0.074 4.074 24 C -0.120 4.120 25 C -0.222 4.222 26 C -0.019 4.019 27 O -0.160 6.160 28 C 0.112 3.888 29 H 0.270 0.730 30 H 0.392 0.608 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.349 0.651 34 H 0.076 0.924 35 H 0.028 0.972 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.161 0.839 43 H 0.156 0.844 44 H 0.209 0.791 45 H 0.103 0.897 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 -30.291 3.595 30.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.226 3.774 11 O -0.463 6.463 12 C -0.082 4.082 13 N -0.304 5.304 14 C -0.063 4.063 15 C -0.119 4.119 16 H 0.106 0.894 17 C -0.153 4.153 18 C -0.171 4.171 19 C -0.026 4.026 20 N -0.334 5.334 21 C 0.385 3.615 22 O -0.385 6.385 23 C -0.125 4.125 24 C -0.141 4.141 25 C -0.241 4.241 26 C -0.088 4.088 27 O -0.056 6.056 28 C -0.010 4.010 29 H 0.080 0.920 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.170 0.830 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.179 0.821 43 H 0.174 0.826 44 H 0.225 0.775 45 H 0.121 0.879 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.618 -29.561 2.935 30.233 hybrid contribution -0.436 0.670 0.906 1.209 sum 5.182 -28.891 3.841 29.602 Atomic orbital electron populations 1.69627 1.05918 1.27955 1.50978 1.25263 0.95649 0.99708 0.97467 0.85799 0.79765 0.81146 0.77642 1.19194 1.20779 1.20811 1.19767 0.93422 0.82237 1.47206 0.87862 1.41866 1.09165 1.04601 1.64616 1.19839 0.88430 0.84754 0.84391 1.90543 1.13732 1.87030 1.55038 1.21671 0.94340 0.91018 1.01162 1.60092 1.18852 0.99931 1.51517 1.21951 0.94989 0.88673 1.00699 1.21538 0.97583 0.94238 0.98545 0.89380 1.21559 0.97550 0.93588 1.02564 1.21908 0.98349 0.99297 0.97557 1.22169 0.98817 0.83792 0.97871 1.47933 1.06474 1.08482 1.70558 1.16727 0.81181 0.86144 0.77409 1.90952 1.72758 1.23539 1.51287 1.22130 0.94224 0.82931 1.13235 1.22035 0.93449 0.98561 1.00046 1.21875 1.00233 0.93102 1.08874 1.24516 0.84728 0.96857 1.02708 1.84226 1.35071 1.16663 1.69642 1.21827 0.92762 0.89000 0.97366 0.92002 0.77497 0.89582 0.93904 0.83039 0.90582 0.95362 0.91658 0.91137 0.91296 0.90480 0.87922 0.91143 0.82128 0.82639 0.77487 0.87927 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.03 13.05 55.50 0.72 -24.31 16 2 C 0.02 0.56 5.50 -17.46 -0.10 0.46 16 3 Si 0.93 21.59 29.55 -169.99 -5.02 16.56 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 8 H 0.10 3.12 7.16 -52.48 -0.38 2.75 16 9 N -0.57 -14.74 5.29 -10.96 -0.06 -14.80 16 10 C 0.44 10.80 7.82 -10.99 -0.09 10.71 16 11 O -0.58 -16.48 15.78 5.55 0.09 -16.39 16 12 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 13 N -0.67 -11.29 6.12 -115.05 -0.70 -11.99 16 14 C 0.07 0.81 5.15 -3.82 -0.02 0.79 16 15 C -0.10 -1.08 2.55 -90.50 -0.23 -1.32 16 16 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 17 C -0.11 -0.91 5.17 -26.69 -0.14 -1.04 16 18 C -0.13 -0.95 6.08 -26.61 -0.16 -1.11 16 19 C 0.10 0.77 6.10 -3.71 -0.02 0.74 16 20 N -0.60 -6.82 2.97 -174.32 -0.52 -7.34 16 21 C 0.60 8.11 7.65 -12.86 -0.10 8.01 16 22 O -0.51 -8.89 16.30 5.20 0.08 -8.80 16 23 C -0.07 -0.81 6.76 -36.80 -0.25 -1.06 16 24 C -0.12 -1.20 10.63 -39.39 -0.42 -1.62 16 25 C -0.22 -1.55 10.88 -39.88 -0.43 -1.99 16 26 C -0.02 -0.11 12.08 29.63 0.36 0.25 16 27 O -0.16 -1.34 7.27 4.98 0.04 -1.30 16 28 C 0.11 1.33 5.36 -3.71 -0.02 1.31 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.39 9.71 7.90 -40.82 -0.32 9.38 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.35 6.23 6.82 -39.29 -0.27 5.96 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 40 H 0.10 0.79 4.26 -52.94 -0.23 0.56 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 43 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.21 0.31 8.06 -52.49 -0.42 -0.11 16 45 H 0.10 1.53 5.81 -51.93 -0.30 1.23 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 379.19 15.07 5.71 5.71 Total: -1.00 -35.28 379.19 -8.00 -43.28 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -6.55 Total: 13.00 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -1.79 Total: 6.38 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.56 Total: -58.44 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: 0.21 Total: -26.50 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.28 -8.00 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713222322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.950 kcal (2) G-P(sol) polarization free energy of solvation -35.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds