Wall clock time and date at job start Tue Mar 31 2020 18:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 120.00337 * 2 1 4 4 H 1.48505 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46895 * 299.99763 * 3 2 1 6 6 H 1.48497 * 109.46964 * 59.99709 * 3 2 1 7 7 C 1.38956 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00089 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99776 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99750 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00117 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99940 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47012 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99908 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47145 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.52365 * 304.91738 * 15 14 13 17 17 C 1.53042 * 109.49840 * 184.83737 * 15 14 13 18 18 C 1.53039 * 109.53687 * 178.68316 * 17 15 14 19 19 C 1.53191 * 109.31529 * 61.36517 * 18 17 15 20 20 N 1.46925 * 108.77394 * 305.36097 * 19 18 17 21 21 C 1.34774 * 120.63395 * 233.58805 * 20 19 18 22 22 O 1.21691 * 120.00360 * 172.67130 * 21 20 19 23 23 C 1.46660 * 119.99721 * 352.67109 * 21 20 19 24 24 C 1.36543 * 125.98475 * 172.40283 * 23 21 20 25 25 C 1.40369 * 106.70660 * 179.97438 * 24 23 21 26 26 C 1.35133 * 107.11472 * 359.97438 * 25 24 23 27 27 O 1.33937 * 108.76695 * 359.75758 * 26 25 24 28 28 C 1.46929 * 118.73964 * 53.61080 * 20 19 18 29 29 H 0.97005 * 119.99353 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00480 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46772 * 60.00904 * 12 10 9 32 32 H 1.08999 * 109.47307 * 300.00467 * 12 10 9 33 33 H 1.00901 * 111.00160 * 56.05233 * 13 12 10 34 34 H 1.08998 * 109.47110 * 59.99509 * 14 13 12 35 35 H 1.09002 * 109.46762 * 299.99876 * 14 13 12 36 36 H 1.09005 * 109.45695 * 298.70298 * 17 15 14 37 37 H 1.08994 * 109.45870 * 58.66029 * 17 15 14 38 38 H 1.08997 * 109.49764 * 301.41185 * 18 17 15 39 39 H 1.09007 * 109.49427 * 181.31556 * 18 17 15 40 40 H 1.09001 * 109.58558 * 185.58006 * 19 18 17 41 41 H 1.08997 * 109.58677 * 65.14891 * 19 18 17 42 42 H 1.08000 * 126.65180 * 359.97438 * 24 23 21 43 43 H 1.08001 * 126.44319 * 179.97438 * 25 24 23 44 44 H 1.08001 * 125.61608 * 179.97438 * 26 25 24 45 45 H 1.08990 * 109.59129 * 186.60439 * 28 20 19 46 46 H 1.09005 * 109.70455 * 66.24525 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7083 1.3462 0.0006 5 1 1.8895 2.3964 -1.2126 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5580 0.0011 12 6 1.2436 -4.8629 0.0022 13 7 2.1981 -5.9795 0.0027 14 6 1.4978 -7.2709 0.0026 15 6 2.5226 -8.4069 0.0038 16 1 3.2038 -8.2838 -0.8381 17 6 1.7975 -9.7491 -0.1179 18 6 2.8236 -10.8841 -0.1498 19 6 3.6217 -10.8826 1.1577 20 7 4.2041 -9.5481 1.3547 21 6 5.5263 -9.4008 1.5699 22 8 6.0179 -8.2879 1.5986 23 6 6.3728 -10.5817 1.7695 24 6 7.7358 -10.5873 1.8507 25 6 8.1230 -11.9227 2.0433 26 6 6.9936 -12.6642 2.0715 27 8 5.9408 -11.8518 1.9118 28 6 3.3174 -8.3772 1.3131 29 1 -0.4849 0.8401 -0.0004 30 1 0.3533 -2.3907 0.0016 31 1 0.6167 -4.9209 -0.8876 32 1 0.6172 -4.9205 0.8924 33 1 2.8330 -5.9122 0.7841 34 1 0.8731 -7.3454 -0.8875 35 1 0.8726 -7.3451 0.8925 36 1 1.1348 -9.8827 0.7372 37 1 1.2116 -9.7633 -1.0368 38 1 3.5020 -10.7377 -0.9903 39 1 2.3076 -11.8380 -0.2600 40 1 4.4186 -11.6241 1.1003 41 1 2.9593 -11.1187 1.9905 42 1 8.3894 -9.7305 1.7803 43 1 9.1336 -12.2888 2.1491 44 1 6.9474 -13.7350 2.2047 45 1 3.9133 -7.4658 1.3582 46 1 2.6300 -8.4065 2.1586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713222322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:29 Heat of formation + Delta-G solvation = -73.914335 kcal Electronic energy + Delta-G solvation = -28368.329026 eV Core-core repulsion = 24258.670126 eV Total energy + Delta-G solvation = -4109.658900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.74012 -41.15315 -40.17583 -38.94314 -36.85459 -35.90495 -34.33538 -33.86667 -33.28575 -32.43190 -30.95371 -28.73137 -27.00902 -26.60282 -25.01962 -23.75493 -22.82557 -22.59643 -21.54419 -21.05271 -20.62972 -19.92684 -18.74420 -17.91903 -17.75349 -17.39842 -17.28679 -16.70871 -16.50084 -16.12195 -15.98425 -15.62143 -15.44014 -15.23586 -15.11464 -14.58073 -14.34721 -14.24808 -14.10696 -13.92171 -13.89393 -13.63064 -13.53707 -13.41723 -13.12811 -12.83661 -12.43845 -12.38706 -12.13591 -12.10900 -11.85377 -11.70113 -11.53690 -11.47357 -11.32152 -11.02530 -10.36992 -10.03355 -9.95247 -9.56192 -9.32575 -8.48790 -5.97416 -0.00795 1.34784 1.39792 1.41166 1.51358 1.54549 1.95722 2.03092 2.11435 2.27972 2.91181 3.18117 3.42144 3.49394 3.77284 3.81653 3.90516 3.94939 4.05839 4.10340 4.22402 4.30286 4.33112 4.46337 4.48958 4.55696 4.63349 4.67052 4.69530 4.79749 4.81360 4.87240 4.90198 4.96075 5.08891 5.13551 5.27413 5.35884 5.39231 5.44843 5.49335 5.83522 5.88234 6.10755 6.22342 6.34266 6.58727 6.87056 7.11034 7.54066 8.10585 8.68827 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.002084 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.941492 B =13432.057461 C =14738.652501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.335 4.335 8 H 0.075 0.925 9 N -0.572 5.572 10 C 0.434 3.566 11 O -0.627 6.627 12 C 0.066 3.934 13 N -0.692 5.692 14 C 0.069 3.931 15 C -0.091 4.091 16 H 0.058 0.942 17 C -0.108 4.108 18 C -0.128 4.128 19 C 0.091 3.909 20 N -0.599 5.599 21 C 0.588 3.412 22 O -0.570 6.570 23 C -0.105 4.105 24 C -0.131 4.131 25 C -0.234 4.234 26 C 0.010 3.990 27 O -0.157 6.157 28 C 0.112 3.888 29 H 0.278 0.722 30 H 0.398 0.602 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.339 0.661 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.148 0.852 43 H 0.181 0.819 44 H 0.260 0.740 45 H 0.061 0.939 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.260 -33.394 3.872 33.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.201 1.201 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.464 4.464 8 H 0.093 0.907 9 N -0.209 5.209 10 C 0.221 3.779 11 O -0.513 6.513 12 C -0.066 4.066 13 N -0.325 5.325 14 C -0.060 4.060 15 C -0.110 4.110 16 H 0.077 0.923 17 C -0.146 4.146 18 C -0.166 4.166 19 C -0.029 4.029 20 N -0.330 5.330 21 C 0.377 3.623 22 O -0.452 6.452 23 C -0.156 4.156 24 C -0.152 4.152 25 C -0.253 4.253 26 C -0.059 4.059 27 O -0.054 6.054 28 C -0.011 4.011 29 H 0.088 0.912 30 H 0.232 0.768 31 H 0.126 0.874 32 H 0.088 0.912 33 H 0.158 0.842 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.108 0.892 42 H 0.166 0.834 43 H 0.199 0.801 44 H 0.276 0.724 45 H 0.080 0.920 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.899 -32.715 3.198 33.101 hybrid contribution 0.116 1.500 0.834 1.721 sum 4.015 -31.214 4.032 31.729 Atomic orbital electron populations 1.69676 1.06716 1.29265 1.50284 1.26044 0.96616 1.02362 0.96244 0.84872 0.77882 0.77077 0.78484 1.20133 1.19362 1.19362 1.19685 0.92611 0.84157 1.49989 0.90692 1.41918 1.09333 1.04631 1.65056 1.21004 0.88270 0.86404 0.82191 1.90512 1.16168 1.88010 1.56631 1.21542 0.93889 0.87820 1.03346 1.60106 1.19365 1.01553 1.51492 1.22074 0.95204 0.86439 1.02246 1.21447 0.96956 0.96020 0.96600 0.92311 1.21549 0.97629 0.91433 1.03981 1.21911 0.97905 1.00510 0.96272 1.22456 0.99365 0.81913 0.99214 1.48088 1.05848 1.09716 1.69313 1.17157 0.81987 0.86335 0.76778 1.90902 1.74002 1.25929 1.54343 1.21619 0.93998 0.83443 1.16569 1.22252 0.93308 1.00041 0.99556 1.22189 1.02133 0.91521 1.09416 1.25539 0.83419 0.98321 0.98603 1.84204 1.35898 1.15652 1.69620 1.21758 0.92568 0.87982 0.98771 0.91224 0.76831 0.87392 0.91240 0.84196 0.89238 0.93173 0.89817 0.89933 0.92781 0.87262 0.87309 0.89167 0.83377 0.80115 0.72437 0.91999 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.58 13.05 21.67 0.28 -50.30 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 44.48 29.55 68.60 2.03 46.51 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.33 -19.85 9.68 84.04 0.81 -19.04 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -30.62 5.29 -306.98 -1.62 -32.24 16 10 C 0.43 21.93 7.82 87.66 0.69 22.62 16 11 O -0.63 -37.55 15.78 -3.05 -0.05 -37.60 16 12 C 0.07 2.38 6.17 85.56 0.53 2.91 16 13 N -0.69 -23.66 6.12 -517.92 -3.17 -26.84 16 14 C 0.07 1.59 5.15 86.30 0.44 2.03 16 15 C -0.09 -1.95 2.55 -10.71 -0.03 -1.97 16 16 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 17 C -0.11 -1.42 5.17 30.62 0.16 -1.26 16 18 C -0.13 -1.49 6.08 30.67 0.19 -1.31 16 19 C 0.09 1.29 6.10 86.36 0.53 1.82 16 20 N -0.60 -13.99 2.97 -823.63 -2.45 -16.44 16 21 C 0.59 17.31 7.65 86.44 0.66 17.97 16 22 O -0.57 -22.39 16.30 -4.32 -0.07 -22.46 16 23 C -0.11 -2.39 6.76 24.07 0.16 -2.23 16 24 C -0.13 -2.72 10.63 22.39 0.24 -2.48 16 25 C -0.23 -2.83 10.88 22.07 0.24 -2.59 16 26 C 0.01 0.08 12.08 67.10 0.81 0.89 16 27 O -0.16 -2.35 7.27 -5.10 -0.04 -2.39 16 28 C 0.11 2.76 5.36 86.36 0.46 3.23 16 29 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 30 H 0.40 19.94 7.90 -92.71 -0.73 19.21 16 31 H 0.11 3.42 8.14 -2.39 -0.02 3.41 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.34 12.81 6.82 -89.69 -0.61 12.20 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.11 1.45 4.26 -18.35 -0.08 1.37 16 41 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 43 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 44 H 0.26 -0.73 8.06 -2.91 -0.02 -0.75 16 45 H 0.06 2.06 5.81 -2.39 -0.01 2.05 16 46 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -83.20 379.19 0.88 -82.32 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.39 Total: 39.11 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 6.36 Total: 20.34 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -6.96 Total: -125.82 kcal Atomic # 8 Polarization: -62.29 SS G_CDS: -0.16 Total: -62.45 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -83.20 0.88 -82.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713222322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.402 kcal (2) G-P(sol) polarization free energy of solvation -83.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds