Wall clock time and date at job start Tue Mar 31 2020 19:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00479 * 2 1 4 4 H 1.48502 * 109.46984 * 264.80320 * 3 2 1 5 5 H 1.48508 * 109.46932 * 24.79843 * 3 2 1 6 6 H 1.48494 * 109.47288 * 144.79913 * 3 2 1 7 7 C 1.38815 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99493 * 341.44544 * 7 2 1 9 9 N 1.36930 * 120.00288 * 161.44950 * 7 2 1 10 10 C 1.47748 * 125.82165 * 343.49481 * 9 7 2 11 11 C 1.54910 * 104.84188 * 204.24550 * 10 9 7 12 12 C 1.55151 * 101.58325 * 322.90802 * 11 10 9 13 13 C 1.47019 * 125.65287 * 163.48982 * 9 7 2 14 14 H 1.09004 * 109.88015 * 59.31979 * 13 9 7 15 15 C 1.52999 * 109.88389 * 298.32006 * 13 9 7 16 16 C 1.52999 * 109.47628 * 67.77954 * 15 13 9 17 17 C 1.52998 * 109.47203 * 177.30562 * 16 15 13 18 18 N 1.46497 * 109.46920 * 179.97438 * 17 16 15 19 19 C 1.34780 * 119.99942 * 180.02562 * 18 17 16 20 20 O 1.21603 * 120.00111 * 0.02562 * 19 18 17 21 21 C 1.47291 * 119.99712 * 180.02562 * 19 18 17 22 22 C 1.36576 * 125.80268 * 179.71571 * 21 19 18 23 23 C 1.40063 * 106.92474 * 179.84225 * 22 21 19 24 24 C 1.36572 * 106.92416 * 0.41491 * 23 22 21 25 25 C 1.47295 * 125.79998 * 179.74367 * 24 23 22 26 26 N 1.34777 * 119.99533 * 179.97438 * 25 24 23 27 27 O 1.21604 * 120.00415 * 359.97326 * 25 24 23 28 28 O 1.34543 * 108.39173 * 359.74114 * 24 23 22 29 29 H 0.97006 * 119.99461 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.43796 * 85.36663 * 10 9 7 31 31 H 1.09002 * 110.29225 * 323.05062 * 10 9 7 32 32 H 1.08999 * 111.00757 * 204.82542 * 11 10 9 33 33 H 1.09004 * 111.03443 * 80.99307 * 11 10 9 34 34 H 1.09008 * 110.71903 * 277.13509 * 12 11 10 35 35 H 1.09002 * 110.72304 * 153.86247 * 12 11 10 36 36 H 1.09006 * 109.46882 * 307.78111 * 15 13 9 37 37 H 1.09000 * 109.47430 * 187.78337 * 15 13 9 38 38 H 1.08998 * 109.47131 * 57.30625 * 16 15 13 39 39 H 1.09000 * 109.46812 * 297.30643 * 16 15 13 40 40 H 1.08991 * 109.47593 * 300.00312 * 17 16 15 41 41 H 1.09002 * 109.47184 * 60.00736 * 17 16 15 42 42 H 0.96998 * 120.00516 * 0.02562 * 18 17 16 43 43 H 1.07995 * 126.53955 * 359.97438 * 22 21 19 44 44 H 1.08004 * 126.53743 * 180.13247 * 23 22 21 45 45 H 0.97000 * 120.00545 * 0.02562 * 26 25 24 46 46 H 0.97007 * 119.99765 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6076 1.9828 -1.3943 5 1 1.3971 2.6819 0.5873 6 1 3.4885 1.4742 0.8070 7 6 2.0102 -1.2022 -0.0005 8 1 1.5122 -2.1133 0.2967 9 7 3.3261 -1.2330 -0.3778 10 6 4.0376 -0.1726 -1.1210 11 6 5.2139 -0.8989 -1.8201 12 6 5.6211 -1.9397 -0.7439 13 6 4.2689 -2.3290 -0.1103 14 1 3.9013 -3.2519 -0.5589 15 6 4.4358 -2.5151 1.3991 16 6 3.1281 -3.0388 1.9962 17 6 3.3153 -3.2886 3.4940 18 7 2.0630 -3.7895 4.0658 19 6 1.9910 -4.0804 5.3798 20 8 2.9654 -3.9267 6.0909 21 6 0.7320 -4.5846 5.9545 22 6 0.5289 -4.9204 7.2627 23 6 -0.8013 -5.3451 7.3728 24 6 -1.3506 -5.2592 6.1254 25 6 -2.7354 -5.6115 5.7677 26 7 -3.1564 -5.4803 4.4941 27 8 -3.4986 -6.0207 6.6214 28 8 -0.4119 -4.7980 5.2790 29 1 -0.4850 0.8401 -0.0004 30 1 4.4143 0.5859 -0.4348 31 1 3.3769 0.2788 -1.8611 32 1 6.0322 -0.2090 -2.0259 33 1 4.8818 -1.3915 -2.7340 34 1 6.2795 -1.4890 -0.0012 35 1 6.0946 -2.8064 -1.2052 36 1 4.6870 -1.5585 1.8575 37 1 5.2351 -3.2309 1.5908 38 1 2.8518 -3.9713 1.5041 39 1 2.3394 -2.3015 1.8466 40 1 4.1040 -4.0258 3.6437 41 1 3.5915 -2.3560 3.9861 42 1 1.2856 -3.9118 3.4987 43 1 1.2548 -4.8666 8.0605 44 1 -1.2966 -5.6811 8.2719 45 1 -2.5475 -5.1543 3.8131 46 1 -4.0683 -5.7126 4.2584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713433687.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:29 Heat of formation + Delta-G solvation = -38.260493 kcal Electronic energy + Delta-G solvation = -28519.437062 eV Core-core repulsion = 24411.324228 eV Total energy + Delta-G solvation = -4108.112834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.08920 -39.72075 -39.33039 -38.23109 -35.56222 -34.23214 -33.37706 -32.71651 -32.62276 -30.58354 -29.96756 -28.57419 -25.61273 -24.57372 -23.81481 -22.29185 -21.65594 -21.30688 -20.64101 -20.32422 -19.26624 -18.90179 -17.84523 -17.18136 -16.90999 -16.88384 -16.07837 -15.84809 -15.31029 -15.12356 -14.92816 -14.72050 -14.27699 -14.03075 -13.50588 -13.38439 -13.34965 -13.31407 -13.05943 -12.85091 -12.54236 -12.15948 -12.03258 -11.38154 -11.20952 -11.06674 -10.94700 -10.88437 -10.50649 -10.48618 -10.42482 -10.38137 -10.14754 -9.99461 -9.90717 -9.74725 -9.29780 -9.23389 -8.94288 -8.76391 -7.08221 -5.98932 -3.28650 0.36491 1.64330 2.07104 2.79461 2.94430 2.99473 3.22771 3.30506 3.43741 3.45723 4.36426 4.49679 4.52522 4.68359 4.88677 5.11419 5.19124 5.21349 5.27164 5.28267 5.42509 5.47769 5.52240 5.57174 5.72433 5.88897 5.90728 5.93597 6.07156 6.08089 6.17926 6.19261 6.23930 6.29344 6.39702 6.40601 6.50252 6.58808 6.64538 6.77443 6.90242 6.97930 7.02309 7.38787 7.66368 7.73198 7.94992 8.24547 8.76723 9.64294 10.15995 11.16656 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012885 B = 0.002748 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.569637 B =10186.051958 C =11387.505744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.018 3.982 3 Si 0.888 3.112 4 H -0.288 1.288 5 H -0.306 1.306 6 H -0.274 1.274 7 C -0.235 4.235 8 H 0.099 0.901 9 N -0.605 5.605 10 C 0.101 3.899 11 C -0.132 4.132 12 C -0.127 4.127 13 C 0.162 3.838 14 H 0.042 0.958 15 C -0.116 4.116 16 C -0.144 4.144 17 C 0.119 3.881 18 N -0.707 5.707 19 C 0.596 3.404 20 O -0.519 6.519 21 C -0.030 4.030 22 C -0.139 4.139 23 C -0.128 4.128 24 C -0.054 4.054 25 C 0.611 3.389 26 N -0.838 5.838 27 O -0.521 6.521 28 O -0.150 6.150 29 H 0.262 0.738 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.114 0.886 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.409 0.591 43 H 0.170 0.830 44 H 0.169 0.831 45 H 0.412 0.588 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.375 -10.511 6.757 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.719 3.281 4 H -0.215 1.215 5 H -0.235 1.235 6 H -0.200 1.200 7 C -0.362 4.362 8 H 0.116 0.884 9 N -0.331 5.331 10 C -0.024 4.024 11 C -0.170 4.170 12 C -0.165 4.165 13 C 0.055 3.945 14 H 0.060 0.940 15 C -0.156 4.156 16 C -0.181 4.181 17 C -0.003 4.003 18 N -0.356 5.356 19 C 0.381 3.619 20 O -0.396 6.396 21 C -0.085 4.085 22 C -0.160 4.160 23 C -0.149 4.149 24 C -0.108 4.108 25 C 0.395 3.605 26 N -0.402 5.402 27 O -0.398 6.398 28 O -0.046 6.046 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.244 0.756 43 H 0.187 0.813 44 H 0.187 0.813 45 H 0.242 0.758 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 2.440 -10.483 7.592 13.171 hybrid contribution -0.020 1.094 -0.513 1.208 sum 2.420 -9.389 7.080 12.005 Atomic orbital electron populations 1.69782 1.05390 1.26476 1.54175 1.24924 0.95155 0.97370 1.00544 0.87001 0.78841 0.84650 0.77588 1.21519 1.23472 1.20002 1.18631 0.82445 0.94957 1.40143 0.88390 1.44941 1.07437 1.17054 1.63672 1.22128 0.93260 0.92501 0.94528 1.22708 0.98095 0.98103 0.98106 1.22606 0.97203 0.98678 0.98036 1.20975 0.88908 0.92283 0.92356 0.94001 1.21887 0.95587 1.00174 0.97938 1.22180 1.01837 1.03001 0.91108 1.21629 0.84337 0.99069 0.95294 1.46028 1.16467 1.64895 1.08255 1.16670 0.84373 0.78245 0.82651 1.90868 1.34688 1.53869 1.60219 1.22610 0.86330 1.07149 0.92393 1.21979 0.96975 1.00978 0.96032 1.21983 0.94000 1.01224 0.97647 1.22298 0.90538 1.07904 0.90102 1.16608 0.83437 0.77322 0.83172 1.43721 1.18068 1.68712 1.09651 1.90917 1.53330 1.46491 1.49087 1.84058 1.18611 1.63966 1.37926 0.92801 0.95263 0.92414 0.91953 0.91449 0.91688 0.91751 0.92108 0.93284 0.92315 0.86753 0.91791 0.91246 0.75551 0.81284 0.81349 0.75850 0.75627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.46 13.97 55.49 0.78 -25.69 16 2 C 0.02 0.49 5.47 -17.43 -0.10 0.40 16 3 Si 0.89 21.88 24.24 -169.99 -4.12 17.76 16 4 H -0.29 -6.93 6.43 56.52 0.36 -6.57 16 5 H -0.31 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.27 -6.63 6.20 56.52 0.35 -6.28 16 7 C -0.24 -5.94 8.39 -15.06 -0.13 -6.06 16 8 H 0.10 2.55 6.63 -52.49 -0.35 2.20 16 9 N -0.61 -13.24 2.99 -162.32 -0.48 -13.72 16 10 C 0.10 2.08 4.67 -2.35 -0.01 2.06 16 11 C -0.13 -2.10 7.08 -24.59 -0.17 -2.27 16 12 C -0.13 -1.88 6.48 -24.90 -0.16 -2.04 16 13 C 0.16 2.83 3.22 -66.96 -0.22 2.62 16 14 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 15 C -0.12 -1.82 4.72 -26.73 -0.13 -1.95 16 16 C -0.14 -2.24 4.64 -26.73 -0.12 -2.36 16 17 C 0.12 1.69 5.67 -4.04 -0.02 1.67 16 18 N -0.71 -9.52 5.55 -61.43 -0.34 -9.86 16 19 C 0.60 8.51 7.81 -12.58 -0.10 8.41 16 20 O -0.52 -8.72 16.86 5.27 0.09 -8.63 16 21 C -0.03 -0.38 7.14 -36.50 -0.26 -0.64 16 22 C -0.14 -1.54 10.60 -39.50 -0.42 -1.96 16 23 C -0.13 -1.35 10.60 -39.50 -0.42 -1.76 16 24 C -0.05 -0.61 7.14 -36.50 -0.26 -0.87 16 25 C 0.61 6.72 8.08 -12.58 -0.10 6.61 16 26 N -0.84 -6.46 8.87 30.40 0.27 -6.19 16 27 O -0.52 -7.19 17.70 5.27 0.09 -7.09 16 28 O -0.15 -1.73 10.14 4.36 0.04 -1.69 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.03 0.64 5.44 -51.93 -0.28 0.36 16 31 H 0.06 1.29 6.13 -51.93 -0.32 0.97 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.91 7.85 -51.92 -0.41 0.50 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.11 2.20 4.92 -51.93 -0.26 1.95 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.41 5.00 8.23 -40.82 -0.34 4.67 16 43 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 44 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 45 H 0.41 2.67 8.59 -40.82 -0.35 2.32 16 46 H 0.41 2.44 8.93 -40.82 -0.36 2.07 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -32.27 376.18 -7.16 -39.42 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.54 Total: 8.17 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.61 Total: 1.85 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.22 Total: -55.46 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.23 Total: -17.41 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.12 Total: 17.76 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.27 -7.16 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713433687.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.163 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds