Wall clock time and date at job start Tue Mar 31 2020 19:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00479 * 2 1 4 4 H 1.48502 * 109.46984 * 264.80320 * 3 2 1 5 5 H 1.48508 * 109.46932 * 24.79843 * 3 2 1 6 6 H 1.48494 * 109.47288 * 144.79913 * 3 2 1 7 7 C 1.38815 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99493 * 341.44544 * 7 2 1 9 9 N 1.36930 * 120.00288 * 161.44950 * 7 2 1 10 10 C 1.47748 * 125.82165 * 343.49481 * 9 7 2 11 11 C 1.54910 * 104.84188 * 204.24550 * 10 9 7 12 12 C 1.55151 * 101.58325 * 322.90802 * 11 10 9 13 13 C 1.47019 * 125.65287 * 163.48982 * 9 7 2 14 14 H 1.09004 * 109.88015 * 59.31979 * 13 9 7 15 15 C 1.52999 * 109.88389 * 298.32006 * 13 9 7 16 16 C 1.52999 * 109.47628 * 67.77954 * 15 13 9 17 17 C 1.52998 * 109.47203 * 177.30562 * 16 15 13 18 18 N 1.46497 * 109.46920 * 179.97438 * 17 16 15 19 19 C 1.34780 * 119.99942 * 180.02562 * 18 17 16 20 20 O 1.21603 * 120.00111 * 0.02562 * 19 18 17 21 21 C 1.47291 * 119.99712 * 180.02562 * 19 18 17 22 22 C 1.36576 * 125.80268 * 179.71571 * 21 19 18 23 23 C 1.40063 * 106.92474 * 179.84225 * 22 21 19 24 24 C 1.36572 * 106.92416 * 0.41491 * 23 22 21 25 25 C 1.47295 * 125.79998 * 179.74367 * 24 23 22 26 26 N 1.34777 * 119.99533 * 179.97438 * 25 24 23 27 27 O 1.21604 * 120.00415 * 359.97326 * 25 24 23 28 28 O 1.34543 * 108.39173 * 359.74114 * 24 23 22 29 29 H 0.97006 * 119.99461 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.43796 * 85.36663 * 10 9 7 31 31 H 1.09002 * 110.29225 * 323.05062 * 10 9 7 32 32 H 1.08999 * 111.00757 * 204.82542 * 11 10 9 33 33 H 1.09004 * 111.03443 * 80.99307 * 11 10 9 34 34 H 1.09008 * 110.71903 * 277.13509 * 12 11 10 35 35 H 1.09002 * 110.72304 * 153.86247 * 12 11 10 36 36 H 1.09006 * 109.46882 * 307.78111 * 15 13 9 37 37 H 1.09000 * 109.47430 * 187.78337 * 15 13 9 38 38 H 1.08998 * 109.47131 * 57.30625 * 16 15 13 39 39 H 1.09000 * 109.46812 * 297.30643 * 16 15 13 40 40 H 1.08991 * 109.47593 * 300.00312 * 17 16 15 41 41 H 1.09002 * 109.47184 * 60.00736 * 17 16 15 42 42 H 0.96998 * 120.00516 * 0.02562 * 18 17 16 43 43 H 1.07995 * 126.53955 * 359.97438 * 22 21 19 44 44 H 1.08004 * 126.53743 * 180.13247 * 23 22 21 45 45 H 0.97000 * 120.00545 * 0.02562 * 26 25 24 46 46 H 0.97007 * 119.99765 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6076 1.9828 -1.3943 5 1 1.3971 2.6819 0.5873 6 1 3.4885 1.4742 0.8070 7 6 2.0102 -1.2022 -0.0005 8 1 1.5122 -2.1133 0.2967 9 7 3.3261 -1.2330 -0.3778 10 6 4.0376 -0.1726 -1.1210 11 6 5.2139 -0.8989 -1.8201 12 6 5.6211 -1.9397 -0.7439 13 6 4.2689 -2.3290 -0.1103 14 1 3.9013 -3.2519 -0.5589 15 6 4.4358 -2.5151 1.3991 16 6 3.1281 -3.0388 1.9962 17 6 3.3153 -3.2886 3.4940 18 7 2.0630 -3.7895 4.0658 19 6 1.9910 -4.0804 5.3798 20 8 2.9654 -3.9267 6.0909 21 6 0.7320 -4.5846 5.9545 22 6 0.5289 -4.9204 7.2627 23 6 -0.8013 -5.3451 7.3728 24 6 -1.3506 -5.2592 6.1254 25 6 -2.7354 -5.6115 5.7677 26 7 -3.1564 -5.4803 4.4941 27 8 -3.4986 -6.0207 6.6214 28 8 -0.4119 -4.7980 5.2790 29 1 -0.4850 0.8401 -0.0004 30 1 4.4143 0.5859 -0.4348 31 1 3.3769 0.2788 -1.8611 32 1 6.0322 -0.2090 -2.0259 33 1 4.8818 -1.3915 -2.7340 34 1 6.2795 -1.4890 -0.0012 35 1 6.0946 -2.8064 -1.2052 36 1 4.6870 -1.5585 1.8575 37 1 5.2351 -3.2309 1.5908 38 1 2.8518 -3.9713 1.5041 39 1 2.3394 -2.3015 1.8466 40 1 4.1040 -4.0258 3.6437 41 1 3.5915 -2.3560 3.9861 42 1 1.2856 -3.9118 3.4987 43 1 1.2548 -4.8666 8.0605 44 1 -1.2966 -5.6811 8.2719 45 1 -2.5475 -5.1543 3.8131 46 1 -4.0683 -5.7126 4.2584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713433687.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:28 Heat of formation + Delta-G solvation = -63.548766 kcal Electronic energy + Delta-G solvation = -28520.533644 eV Core-core repulsion = 24411.324228 eV Total energy + Delta-G solvation = -4109.209415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.99412 -40.79383 -40.30708 -39.70028 -36.77597 -35.05312 -34.56667 -34.31202 -33.88093 -31.71085 -31.55924 -29.84955 -26.81650 -26.16241 -25.06102 -23.35443 -22.96858 -22.30210 -21.86655 -21.32445 -20.73934 -19.83005 -18.87749 -18.66600 -17.98492 -17.85360 -17.45765 -17.16661 -16.84510 -16.48250 -15.87674 -15.70990 -15.36836 -15.26221 -14.97878 -14.85594 -14.41955 -14.33653 -14.24554 -14.19008 -13.85544 -13.64062 -13.42948 -13.10706 -12.72203 -12.60307 -12.40999 -12.06587 -11.93556 -11.81198 -11.65065 -11.50275 -11.34521 -11.29727 -11.22607 -11.02437 -10.93553 -10.70676 -10.35994 -9.92022 -8.93956 -8.06887 -5.29858 -0.57743 0.73103 1.13113 1.31185 1.40548 1.45897 1.90628 1.92271 1.96743 2.38155 2.47380 3.17087 3.38765 3.44657 3.67318 3.81909 3.86250 3.98171 4.13730 4.19186 4.26606 4.31772 4.35970 4.46997 4.53011 4.67928 4.71168 4.78938 4.83815 4.85074 4.97899 5.04238 5.05166 5.11086 5.20595 5.27387 5.30099 5.38427 5.40957 5.62438 5.66724 5.67915 5.83681 6.13783 6.20975 6.30277 6.84448 6.86913 6.98365 7.66543 8.24884 9.12096 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012885 B = 0.002748 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.569637 B =10186.051958 C =11387.505744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.042 4.042 3 Si 0.934 3.066 4 H -0.282 1.282 5 H -0.322 1.322 6 H -0.268 1.268 7 C -0.199 4.199 8 H 0.085 0.915 9 N -0.622 5.622 10 C 0.089 3.911 11 C -0.122 4.122 12 C -0.117 4.117 13 C 0.150 3.850 14 H 0.044 0.956 15 C -0.111 4.111 16 C -0.132 4.132 17 C 0.128 3.872 18 N -0.704 5.704 19 C 0.599 3.401 20 O -0.548 6.548 21 C -0.052 4.052 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.059 4.059 25 C 0.611 3.389 26 N -0.820 5.820 27 O -0.552 6.552 28 O -0.150 6.150 29 H 0.255 0.745 30 H 0.022 0.978 31 H 0.033 0.967 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.414 0.586 43 H 0.184 0.816 44 H 0.187 0.813 45 H 0.419 0.581 46 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 -11.875 6.565 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.236 4.236 3 Si 0.766 3.234 4 H -0.209 1.209 5 H -0.252 1.252 6 H -0.194 1.194 7 C -0.328 4.328 8 H 0.103 0.897 9 N -0.348 5.348 10 C -0.035 4.035 11 C -0.160 4.160 12 C -0.155 4.155 13 C 0.045 3.955 14 H 0.061 0.939 15 C -0.151 4.151 16 C -0.170 4.170 17 C 0.005 3.995 18 N -0.354 5.354 19 C 0.384 3.616 20 O -0.428 6.428 21 C -0.106 4.106 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.113 4.113 25 C 0.394 3.606 26 N -0.384 5.384 27 O -0.432 6.432 28 O -0.046 6.046 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.250 0.750 43 H 0.202 0.798 44 H 0.205 0.795 45 H 0.250 0.750 46 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 4.770 -11.859 7.342 14.741 hybrid contribution -0.716 1.397 -0.484 1.643 sum 4.054 -10.462 6.858 13.150 Atomic orbital electron populations 1.69889 1.06640 1.26325 1.58072 1.25399 0.95612 0.99794 1.02757 0.86236 0.77658 0.81829 0.77661 1.20928 1.25210 1.19376 1.18700 0.83944 0.93988 1.36143 0.89750 1.45160 1.07143 1.18609 1.63887 1.22216 0.94584 0.92637 0.94086 1.22678 0.96710 0.98457 0.98132 1.22624 0.95541 0.99578 0.97746 1.21275 0.89657 0.90771 0.93788 0.93853 1.21827 0.96504 1.00379 0.96394 1.21959 1.00666 1.02107 0.92284 1.21485 0.85033 0.98935 0.94058 1.46005 1.16520 1.64533 1.08334 1.16793 0.84645 0.77686 0.82442 1.90843 1.35865 1.55291 1.60791 1.22371 0.86233 1.08976 0.92992 1.22233 0.97413 0.99424 0.95739 1.22251 0.93702 1.00621 0.98093 1.22507 0.90644 1.07648 0.90486 1.16612 0.83110 0.77162 0.83687 1.43632 1.18755 1.67216 1.08772 1.90903 1.53978 1.48235 1.50084 1.84032 1.18436 1.64181 1.37949 0.93590 0.96086 0.94840 0.89148 0.90878 0.90467 0.88433 0.93672 0.89664 0.91286 0.90850 0.90227 0.92643 0.74954 0.79848 0.79536 0.74960 0.74418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.79 13.97 21.65 0.30 -57.48 16 2 C -0.04 -2.37 5.47 84.86 0.46 -1.90 16 3 Si 0.93 46.27 24.24 68.60 1.66 47.93 16 4 H -0.28 -13.50 6.43 99.48 0.64 -12.86 16 5 H -0.32 -16.63 7.11 99.48 0.71 -15.93 16 6 H -0.27 -12.77 6.20 99.48 0.62 -12.16 16 7 C -0.20 -10.20 8.39 84.04 0.70 -9.49 16 8 H 0.08 4.49 6.63 -2.91 -0.02 4.47 16 9 N -0.62 -26.63 2.99 -667.45 -1.99 -28.62 16 10 C 0.09 3.55 4.67 86.79 0.41 3.96 16 11 C -0.12 -3.43 7.08 31.98 0.23 -3.20 16 12 C -0.12 -2.92 6.48 31.78 0.21 -2.72 16 13 C 0.15 4.87 3.22 45.34 0.15 5.02 16 14 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 15 C -0.11 -3.23 4.72 30.59 0.14 -3.09 16 16 C -0.13 -3.99 4.64 30.59 0.14 -3.85 16 17 C 0.13 3.50 5.67 86.38 0.49 3.99 16 18 N -0.70 -18.71 5.55 -466.53 -2.59 -21.30 16 19 C 0.60 16.83 7.81 86.62 0.68 17.51 16 20 O -0.55 -18.17 16.86 -4.04 -0.07 -18.23 16 21 C -0.05 -1.26 7.14 24.26 0.17 -1.09 16 22 C -0.13 -2.67 10.60 22.32 0.24 -2.43 16 23 C -0.13 -2.49 10.60 22.32 0.24 -2.25 16 24 C -0.06 -1.27 7.14 24.26 0.17 -1.09 16 25 C 0.61 12.93 8.08 86.63 0.70 13.63 16 26 N -0.82 -11.84 8.87 -175.99 -1.56 -13.40 16 27 O -0.55 -14.89 17.70 -4.04 -0.07 -14.97 16 28 O -0.15 -3.37 10.14 -7.30 -0.07 -3.44 16 29 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 30 H 0.02 0.89 5.44 -2.39 -0.01 0.88 16 31 H 0.03 1.48 6.13 -2.39 -0.01 1.47 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.08 1.78 7.85 -2.38 -0.02 1.76 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 2.87 4.92 -2.39 -0.01 2.85 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 42 H 0.41 10.11 8.23 -92.71 -0.76 9.34 16 43 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 44 H 0.19 2.92 8.06 -2.91 -0.02 2.89 16 45 H 0.42 5.04 8.59 -92.71 -0.80 4.24 16 46 H 0.42 4.54 8.93 -92.70 -0.83 3.71 16 Total: -1.00 -71.54 376.18 -0.76 -72.31 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -1.49 Total: 24.23 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 5.13 Total: 12.99 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -5.84 Total: -120.81 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.21 Total: -36.64 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.66 Total: 47.93 kcal Total: -71.54 -0.76 -72.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713433687.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.757 kcal (2) G-P(sol) polarization free energy of solvation -71.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds