Wall clock time and date at job start Tue Mar 31 2020 19:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48497 * 109.47616 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47307 * 300.00499 * 3 2 1 6 6 H 1.48497 * 109.47292 * 60.00105 * 3 2 1 7 7 C 1.38815 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00012 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99820 * 359.97438 * 7 2 1 10 10 C 1.47419 * 125.64971 * 14.64940 * 9 7 2 11 11 C 1.54908 * 104.83405 * 155.90323 * 10 9 7 12 12 C 1.55149 * 101.58153 * 37.01132 * 11 10 9 13 13 C 1.47023 * 125.65028 * 194.68515 * 9 7 2 14 14 H 1.09007 * 109.88090 * 300.44703 * 13 9 7 15 15 C 1.52999 * 109.87930 * 61.45423 * 13 9 7 16 16 C 1.53002 * 109.46895 * 185.12435 * 15 13 9 17 17 C 1.53005 * 109.47040 * 174.93436 * 16 15 13 18 18 N 1.46504 * 109.46979 * 180.02562 * 17 16 15 19 19 C 1.34770 * 119.99978 * 179.97438 * 18 17 16 20 20 O 1.21615 * 119.99908 * 359.97438 * 19 18 17 21 21 C 1.47287 * 120.00380 * 179.97438 * 19 18 17 22 22 C 1.36573 * 125.80937 * 179.71817 * 21 19 18 23 23 C 1.40058 * 106.92680 * 179.85315 * 22 21 19 24 24 C 1.36573 * 106.92377 * 0.40445 * 23 22 21 25 25 C 1.47293 * 125.80267 * 179.78313 * 24 23 22 26 26 N 1.34780 * 120.00047 * 179.97438 * 25 24 23 27 27 O 1.21611 * 120.00370 * 359.97438 * 25 24 23 28 28 O 1.34542 * 108.39242 * 359.75068 * 24 23 22 29 29 H 0.96995 * 120.00670 * 359.97438 * 1 2 3 30 30 H 1.09003 * 110.36954 * 37.06040 * 10 9 7 31 31 H 1.09001 * 110.46128 * 274.78754 * 10 9 7 32 32 H 1.09007 * 111.00331 * 155.08479 * 11 10 9 33 33 H 1.08997 * 111.00466 * 278.92980 * 11 10 9 34 34 H 1.08995 * 110.72298 * 82.86082 * 12 11 10 35 35 H 1.09007 * 110.72213 * 206.13466 * 12 11 10 36 36 H 1.09003 * 109.47529 * 305.12256 * 15 13 9 37 37 H 1.08996 * 109.47435 * 65.12783 * 15 13 9 38 38 H 1.08996 * 109.47079 * 294.93266 * 16 15 13 39 39 H 1.09001 * 109.47384 * 54.93304 * 16 15 13 40 40 H 1.08998 * 109.46949 * 299.99315 * 17 16 15 41 41 H 1.08991 * 109.47259 * 59.99857 * 17 16 15 42 42 H 0.96998 * 119.99770 * 359.97438 * 18 17 16 43 43 H 1.08005 * 126.53345 * 359.97438 * 22 21 19 44 44 H 1.07999 * 126.53794 * 180.18831 * 23 22 21 45 45 H 0.96999 * 119.99456 * 359.97438 * 26 25 24 46 46 H 0.96993 * 120.00105 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3258 -2.3880 -0.0005 10 6 -0.1076 -2.5526 -0.3030 11 6 -0.2473 -4.0215 -0.7748 12 6 0.7645 -4.7442 0.1532 13 6 1.8983 -3.7080 0.3018 14 1 2.7011 -3.9335 -0.4003 15 6 2.4390 -3.7251 1.7330 16 6 3.1454 -5.0567 1.9953 17 6 3.7946 -5.0254 3.3805 18 7 4.4715 -6.3002 3.6314 19 6 5.1179 -6.5020 4.7966 20 8 5.1397 -5.6257 5.6396 21 6 5.7980 -7.7838 5.0493 22 6 6.4896 -8.1122 6.1802 23 6 6.9665 -9.4170 6.0022 24 6 6.5534 -9.8261 4.7664 25 6 6.8317 -11.1370 4.1551 26 7 6.3641 -11.4188 2.9228 27 8 7.4833 -11.9650 4.7622 28 8 5.8484 -8.8284 4.2026 29 1 -0.4851 0.8399 0.0004 30 1 -0.4089 -1.8689 -1.0967 31 1 -0.7077 -2.3827 0.5910 32 1 -1.2600 -4.3899 -0.6108 33 1 0.0395 -4.1246 -1.8213 34 1 0.3125 -4.9627 1.1206 35 1 1.1345 -5.6561 -0.3156 36 1 3.1467 -2.9065 1.8639 37 1 1.6134 -3.6074 2.4348 38 1 2.4187 -5.8680 1.9530 39 1 3.9128 -5.2164 1.2379 40 1 4.5214 -4.2142 3.4228 41 1 3.0273 -4.8657 4.1379 42 1 4.4544 -6.9990 2.9589 43 1 6.6386 -7.4858 7.0474 44 1 7.5525 -9.9890 6.7062 45 1 5.8440 -10.7584 2.4387 46 1 6.5470 -12.2821 2.5204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713433688.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:31 Heat of formation + Delta-G solvation = -72.449798 kcal Electronic energy + Delta-G solvation = -27725.534476 eV Core-core repulsion = 23615.939083 eV Total energy + Delta-G solvation = -4109.595393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.98043 -40.79680 -40.28784 -39.44132 -36.85287 -35.04078 -34.73829 -34.21360 -33.69670 -31.56370 -31.17810 -29.48643 -26.78807 -26.27522 -25.00097 -23.24225 -22.68260 -22.27362 -21.85132 -21.37438 -20.73772 -19.84037 -18.83766 -18.64591 -17.95080 -17.83107 -17.17450 -16.96691 -16.66348 -16.11376 -15.88322 -15.76222 -15.62868 -15.34844 -15.20534 -14.38178 -14.32013 -14.27341 -14.19679 -13.90685 -13.69098 -13.55768 -13.12933 -12.98674 -12.76540 -12.65897 -12.25701 -11.95648 -11.89638 -11.82488 -11.68874 -11.55732 -11.43160 -11.29178 -11.28276 -11.11142 -10.90694 -10.64586 -10.38364 -9.91176 -8.75550 -7.84339 -5.19608 -0.56630 0.74015 1.10195 1.44871 1.45930 1.55522 1.91797 1.92642 1.95331 2.39637 2.50731 3.34386 3.46938 3.67096 3.71806 3.85337 3.95565 4.03398 4.18257 4.27458 4.32814 4.36747 4.37690 4.44791 4.64870 4.71121 4.78590 4.84413 4.86526 5.00209 5.05697 5.06474 5.13903 5.20105 5.27297 5.36128 5.39188 5.52917 5.55233 5.69897 5.70173 5.74245 5.82224 6.18343 6.29376 6.33065 6.89533 7.03192 7.14549 7.84635 8.51638 9.27456 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.001968 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.172978 B =14224.769050 C =15256.742304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.619 5.619 10 C 0.174 3.826 11 C -0.138 4.138 12 C -0.111 4.111 13 C 0.151 3.849 14 H 0.037 0.963 15 C -0.113 4.113 16 C -0.109 4.109 17 C 0.122 3.878 18 N -0.698 5.698 19 C 0.598 3.402 20 O -0.552 6.552 21 C -0.046 4.046 22 C -0.133 4.133 23 C -0.130 4.130 24 C -0.053 4.053 25 C 0.611 3.389 26 N -0.817 5.817 27 O -0.554 6.554 28 O -0.142 6.142 29 H 0.245 0.755 30 H 0.028 0.972 31 H -0.009 1.009 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.038 0.962 37 H 0.043 0.957 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.421 0.579 43 H 0.177 0.823 44 H 0.183 0.817 45 H 0.421 0.579 46 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.743 -24.955 5.297 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.223 1.223 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.344 5.344 10 C 0.049 3.951 11 C -0.176 4.176 12 C -0.148 4.148 13 C 0.045 3.955 14 H 0.054 0.946 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.001 4.001 18 N -0.349 5.349 19 C 0.383 3.617 20 O -0.431 6.431 21 C -0.101 4.101 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.108 4.108 25 C 0.394 3.606 26 N -0.381 5.381 27 O -0.434 6.434 28 O -0.038 6.038 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.009 0.991 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.258 0.742 43 H 0.195 0.805 44 H 0.200 0.800 45 H 0.253 0.747 46 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 10.977 -24.524 6.020 27.535 hybrid contribution -0.025 1.399 -0.347 1.442 sum 10.952 -23.125 5.672 26.208 Atomic orbital electron populations 1.70152 1.06310 1.25020 1.58429 1.25671 0.96482 1.00950 1.02955 0.85139 0.78406 0.80083 0.76548 1.18973 1.22067 1.22271 1.19328 0.90713 0.83699 1.41915 0.90512 1.44863 1.06537 1.02652 1.80304 1.21199 0.84767 0.93169 0.96001 1.22883 0.99784 0.95711 0.99272 1.22589 0.95152 0.97358 0.99748 1.21241 0.95194 0.85319 0.93753 0.94561 1.21818 0.99028 0.96555 0.97894 1.21648 1.00414 0.98061 0.94598 1.21443 0.96113 0.84385 0.98208 1.45820 1.52600 1.18853 1.17587 1.16813 0.78426 0.83754 0.82662 1.90896 1.62265 1.43345 1.46637 1.22226 1.06661 0.88877 0.92295 1.22224 0.97614 0.96446 0.99053 1.22228 1.01283 0.95190 0.96358 1.22445 1.02288 0.90247 0.95792 1.16592 0.78867 0.82859 0.82246 1.43566 1.55757 1.22340 1.16445 1.90928 1.41578 1.47233 1.63666 1.83989 1.57702 1.20685 1.41431 0.94582 0.95398 0.99114 0.90205 0.91825 0.91002 0.88378 0.94294 0.93846 0.88960 0.89865 0.92288 0.91847 0.74158 0.80521 0.80010 0.74716 0.74383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.50 10.58 21.65 0.23 -57.27 16 2 C -0.07 -3.85 5.47 84.86 0.46 -3.39 16 3 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 7 C -0.23 -12.46 9.70 84.04 0.82 -11.65 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.62 -30.54 3.13 -668.27 -2.09 -32.63 16 10 C 0.17 8.43 5.41 86.86 0.47 8.90 16 11 C -0.14 -4.73 7.08 31.98 0.23 -4.50 16 12 C -0.11 -3.16 5.71 31.78 0.18 -2.98 16 13 C 0.15 5.46 3.16 45.34 0.14 5.61 16 14 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 15 C -0.11 -3.62 4.72 30.59 0.14 -3.48 16 16 C -0.11 -2.21 5.10 30.60 0.16 -2.05 16 17 C 0.12 2.63 5.67 86.38 0.49 3.12 16 18 N -0.70 -12.08 5.55 -466.52 -2.59 -14.67 16 19 C 0.60 13.02 7.81 86.62 0.68 13.70 16 20 O -0.55 -16.44 16.86 -4.08 -0.07 -16.51 16 21 C -0.05 -0.82 7.14 24.26 0.17 -0.64 16 22 C -0.13 -2.16 10.60 22.32 0.24 -1.92 16 23 C -0.13 -1.90 10.60 22.32 0.24 -1.66 16 24 C -0.05 -0.77 7.14 24.26 0.17 -0.60 16 25 C 0.61 8.48 8.08 86.62 0.70 9.18 16 26 N -0.82 -4.45 8.87 -175.98 -1.56 -6.01 16 27 O -0.55 -11.72 17.70 -4.07 -0.07 -11.79 16 28 O -0.14 -1.92 10.14 -7.30 -0.07 -2.00 16 29 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.03 1.54 6.93 -2.39 -0.02 1.53 16 31 H -0.01 -0.49 8.06 -2.39 -0.02 -0.51 16 32 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.07 1.93 7.78 -2.39 -0.02 1.92 16 35 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.04 1.45 7.84 -2.39 -0.02 1.43 16 37 H 0.04 1.52 8.03 -2.39 -0.02 1.50 16 38 H 0.09 1.47 7.65 -2.39 -0.02 1.45 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.42 4.54 8.23 -92.71 -0.76 3.78 16 43 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 44 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 45 H 0.42 0.45 8.59 -92.71 -0.80 -0.35 16 46 H 0.42 0.98 8.93 -92.71 -0.83 0.15 16 Total: -1.00 -77.29 388.36 -0.27 -77.56 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -1.35 Total: 7.59 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 5.29 Total: 7.63 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -6.01 Total: -110.57 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.21 Total: -30.30 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -77.29 -0.27 -77.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713433688.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.106 kcal (2) G-P(sol) polarization free energy of solvation -77.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds