Wall clock time and date at job start Tue Mar 31 2020 18:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99933 * 2 1 4 4 H 1.48499 * 109.47276 * 240.00260 * 3 2 1 5 5 H 1.48503 * 109.46958 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47195 * 119.99990 * 3 2 1 7 7 C 1.38811 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99978 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64753 * 14.77149 * 9 7 2 11 11 C 1.54908 * 104.83022 * 155.90864 * 10 9 7 12 12 C 1.55394 * 101.67036 * 36.92376 * 11 10 9 13 13 C 1.47018 * 125.64983 * 194.81293 * 9 7 2 14 14 H 1.09004 * 109.88615 * 300.59908 * 13 9 7 15 15 C 1.53002 * 109.88282 * 61.60816 * 13 9 7 16 16 N 1.46500 * 109.47475 * 184.49894 * 15 13 9 17 17 C 1.34774 * 120.00299 * 185.11235 * 16 15 13 18 18 O 1.21274 * 119.99972 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00010 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.47290 * 180.02562 * 19 17 16 21 21 N 1.46495 * 109.47089 * 179.97438 * 20 19 17 22 22 C 1.34780 * 119.99475 * 179.97438 * 21 20 19 23 23 O 1.21693 * 120.00344 * 0.02562 * 22 21 20 24 24 C 1.46664 * 119.99440 * 180.27651 * 22 21 20 25 25 C 1.36544 * 125.98488 * 179.72868 * 24 22 21 26 26 C 1.40365 * 106.70879 * 179.97438 * 25 24 22 27 27 C 1.35127 * 107.11101 * 359.97438 * 26 25 24 28 28 O 1.33925 * 108.77343 * 359.77343 * 27 26 25 29 29 H 0.97001 * 120.00242 * 359.97438 * 1 2 3 30 30 H 1.08994 * 110.36869 * 274.74741 * 10 9 7 31 31 H 1.09001 * 110.36526 * 36.95924 * 10 9 7 32 32 H 1.08995 * 111.00722 * 155.08846 * 11 10 9 33 33 H 1.09004 * 111.00049 * 278.89514 * 11 10 9 34 34 H 1.09002 * 110.85996 * 206.30281 * 12 11 10 35 35 H 1.09005 * 110.69478 * 82.94917 * 12 11 10 36 36 H 1.09001 * 109.47368 * 64.50065 * 15 13 9 37 37 H 1.09004 * 109.47204 * 304.50139 * 15 13 9 38 38 H 0.96998 * 119.99466 * 5.11233 * 16 15 13 39 39 H 1.08998 * 109.47133 * 60.00136 * 19 17 16 40 40 H 1.09004 * 109.46965 * 300.00423 * 19 17 16 41 41 H 1.09010 * 109.46552 * 59.99996 * 20 19 17 42 42 H 1.08997 * 109.46786 * 300.00235 * 20 19 17 43 43 H 0.97000 * 120.00522 * 0.02562 * 21 20 19 44 44 H 1.08005 * 126.64857 * 359.97438 * 25 24 22 45 45 H 1.08000 * 126.44420 * 179.97438 * 26 25 24 46 46 H 1.08005 * 125.61441 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1074 -2.5529 -0.3055 11 6 -0.2462 -4.0223 -0.7758 12 6 0.7666 -4.7469 0.1537 13 6 1.8975 -3.7077 0.3044 14 1 2.7034 -3.9329 -0.3942 15 6 2.4320 -3.7245 1.7379 16 7 3.0949 -5.0050 1.9970 17 6 3.5545 -5.2883 3.2319 18 8 3.4189 -4.4833 4.1288 19 6 4.2369 -6.6052 3.4982 20 6 4.6581 -6.6735 4.9675 21 7 5.3210 -7.9540 5.2265 22 6 5.7804 -8.2372 6.4615 23 8 5.6443 -7.4295 7.3615 24 6 6.4494 -9.5167 6.7193 25 6 6.9640 -9.9262 7.9160 26 6 7.5055 -11.2041 7.7063 27 6 7.2998 -11.5149 6.4074 28 8 6.6585 -10.4980 5.8173 29 1 -0.4850 0.8400 0.0004 30 1 -0.7075 -2.3824 0.5883 31 1 -0.4074 -1.8688 -1.0992 32 1 -1.2591 -4.3906 -0.6134 33 1 0.0420 -4.1265 -1.8219 34 1 1.1398 -5.6579 -0.3142 35 1 0.3133 -4.9665 1.1204 36 1 1.6046 -3.5961 2.4358 37 1 3.1470 -2.9122 1.8687 38 1 3.2031 -5.6490 1.2797 39 1 5.1182 -6.6928 2.8628 40 1 3.5487 -7.4218 3.2795 41 1 3.7765 -6.5861 5.6026 42 1 5.3461 -5.8569 5.1865 43 1 5.4298 -8.5977 4.5090 44 1 6.9559 -9.3738 8.8440 45 1 7.9945 -11.8226 8.4443 46 1 7.5992 -12.4339 5.9256 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713517937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:06 Heat of formation + Delta-G solvation = -36.116488 kcal Electronic energy + Delta-G solvation = -27584.739523 eV Core-core repulsion = 23476.719661 eV Total energy + Delta-G solvation = -4108.019863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.10919 -39.97768 -39.36509 -37.66801 -35.57739 -34.28419 -33.52419 -32.50688 -31.70787 -30.17382 -29.56127 -28.57838 -25.45762 -24.63647 -23.64585 -22.59163 -22.12150 -20.87548 -20.44616 -20.09333 -19.52267 -18.87982 -17.31347 -16.82546 -16.71288 -16.59964 -16.09082 -15.85559 -15.66828 -14.94019 -14.81111 -14.44266 -14.25609 -13.94434 -13.72300 -13.52919 -13.45045 -13.19993 -13.03302 -12.90773 -12.19262 -12.08963 -11.91380 -11.83909 -11.62959 -11.33275 -10.96220 -10.78567 -10.69516 -10.52148 -10.27620 -10.14881 -9.99845 -9.87113 -9.76909 -9.63223 -9.54089 -9.10560 -8.71315 -8.58955 -6.86061 -5.78564 -3.15507 0.63940 1.91209 2.21558 2.73622 2.77863 2.82830 3.39284 3.45044 3.45264 3.51037 4.21925 4.44155 4.45686 4.47349 4.62254 4.81159 4.87799 5.17448 5.20317 5.31027 5.31837 5.37515 5.43275 5.48156 5.59904 5.62843 5.74574 5.78143 5.85703 5.96760 6.02849 6.10121 6.20744 6.35417 6.42686 6.51750 6.59078 6.66883 6.77923 7.02614 7.06225 7.48897 7.58776 7.71431 7.71938 7.76989 8.23593 8.41467 9.15399 9.76043 10.43171 11.33354 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021773 B = 0.001791 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.683306 B =15632.916472 C =16484.094289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.108 3.892 16 N -0.722 5.722 17 C 0.510 3.490 18 O -0.538 6.538 19 C -0.154 4.154 20 C 0.133 3.867 21 N -0.720 5.720 22 C 0.602 3.398 23 O -0.513 6.513 24 C -0.079 4.079 25 C -0.120 4.120 26 C -0.225 4.225 27 C -0.007 4.007 28 O -0.165 6.165 29 H 0.255 0.745 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.396 0.604 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.405 0.595 44 H 0.161 0.839 45 H 0.157 0.843 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.768 -26.232 6.975 29.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.054 0.946 15 C -0.017 4.017 16 N -0.373 5.373 17 C 0.294 3.706 18 O -0.415 6.415 19 C -0.195 4.195 20 C 0.010 3.990 21 N -0.372 5.372 22 C 0.387 3.613 23 O -0.390 6.390 24 C -0.131 4.131 25 C -0.141 4.141 26 C -0.244 4.244 27 C -0.077 4.077 28 O -0.060 6.060 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.229 0.771 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.239 0.761 44 H 0.179 0.821 45 H 0.175 0.825 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 11.354 -24.701 7.923 28.317 hybrid contribution 0.691 0.072 -0.451 0.829 sum 12.046 -24.630 7.472 28.417 Atomic orbital electron populations 1.69924 1.05031 1.25492 1.55633 1.24926 0.95691 0.97911 1.01272 0.86222 0.78607 0.83038 0.78035 1.21066 1.21536 1.20916 1.18925 0.90352 0.82174 1.44971 0.90710 1.44476 1.06449 1.01018 1.79319 1.21457 0.84813 0.90137 0.98877 1.23046 0.97549 0.99606 0.98537 1.22648 0.97125 0.96908 0.99703 1.21127 0.94513 0.88140 0.91872 0.94576 1.22276 0.96915 0.83218 0.99333 1.46130 1.59562 1.20945 1.10636 1.20204 0.79221 0.88079 0.83054 1.90764 1.56977 1.49768 1.44003 1.21814 1.02434 0.97540 0.97682 1.21151 0.98607 0.84443 0.94839 1.45885 1.59721 1.20521 1.11051 1.16512 0.78224 0.83413 0.83127 1.90935 1.57110 1.46788 1.44188 1.22116 1.09855 0.91499 0.89609 1.22028 0.98023 0.95778 0.98232 1.21897 1.07329 0.97890 0.97293 1.24436 0.97551 0.92291 0.93424 1.84053 1.59552 1.23658 1.38782 0.93508 0.95588 0.90956 0.92344 0.92323 0.92397 0.91847 0.91579 0.91408 0.77095 0.88230 0.88239 0.89926 0.89914 0.76074 0.82123 0.82511 0.77249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.58 55.49 0.59 -25.94 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.40 9.72 -15.06 -0.15 -6.55 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.56 16 9 N -0.59 -14.37 3.13 -162.57 -0.51 -14.88 16 10 C 0.17 4.04 5.42 -2.53 -0.01 4.03 16 11 C -0.15 -2.65 7.09 -24.45 -0.17 -2.83 16 12 C -0.13 -2.01 6.22 -24.76 -0.15 -2.16 16 13 C 0.15 2.89 3.19 -66.95 -0.21 2.68 16 14 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 15 C 0.11 2.01 5.10 -4.04 -0.02 1.99 16 16 N -0.72 -9.84 5.36 -60.29 -0.32 -10.16 16 17 C 0.51 7.14 7.83 -10.99 -0.09 7.06 16 18 O -0.54 -10.29 15.98 5.56 0.09 -10.20 16 19 C -0.15 -1.32 5.81 -27.88 -0.16 -1.49 16 20 C 0.13 1.43 4.96 -4.04 -0.02 1.41 16 21 N -0.72 -6.44 5.55 -61.62 -0.34 -6.78 16 22 C 0.60 6.86 7.79 -12.86 -0.10 6.76 16 23 O -0.51 -7.80 16.86 5.19 0.09 -7.71 16 24 C -0.08 -0.74 7.13 -36.79 -0.26 -1.01 16 25 C -0.12 -1.02 10.62 -39.39 -0.42 -1.44 16 26 C -0.23 -1.32 10.87 -39.89 -0.43 -1.76 16 27 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 28 O -0.17 -1.22 10.40 5.01 0.05 -1.17 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 31 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 1.01 7.78 -51.93 -0.40 0.61 16 36 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 37 H 0.07 1.46 7.86 -51.93 -0.41 1.05 16 38 H 0.40 4.00 8.39 -40.82 -0.34 3.66 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.04 8.10 -51.92 -0.42 0.62 16 42 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 43 H 0.40 2.42 8.23 -40.82 -0.34 2.09 16 44 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 45 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.21 0.15 8.06 -52.48 -0.42 -0.27 16 LS Contribution 388.66 15.07 5.86 5.86 Total: -1.00 -35.54 388.66 -8.34 -43.88 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.88 Total: 3.16 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -1.94 Total: 6.91 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.59 Total: -57.76 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.23 Total: -19.08 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.54 -8.34 -43.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713517937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.764 kcal (2) G-P(sol) polarization free energy of solvation -35.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds