Wall clock time and date at job start Tue Mar 31 2020 18:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99933 * 2 1 4 4 H 1.48499 * 109.47276 * 240.00260 * 3 2 1 5 5 H 1.48503 * 109.46958 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47195 * 119.99990 * 3 2 1 7 7 C 1.38811 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99978 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64753 * 14.77149 * 9 7 2 11 11 C 1.54908 * 104.83022 * 155.90864 * 10 9 7 12 12 C 1.55394 * 101.67036 * 36.92376 * 11 10 9 13 13 C 1.47018 * 125.64983 * 194.81293 * 9 7 2 14 14 H 1.09004 * 109.88615 * 300.59908 * 13 9 7 15 15 C 1.53002 * 109.88282 * 61.60816 * 13 9 7 16 16 N 1.46500 * 109.47475 * 184.49894 * 15 13 9 17 17 C 1.34774 * 120.00299 * 185.11235 * 16 15 13 18 18 O 1.21274 * 119.99972 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00010 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.47290 * 180.02562 * 19 17 16 21 21 N 1.46495 * 109.47089 * 179.97438 * 20 19 17 22 22 C 1.34780 * 119.99475 * 179.97438 * 21 20 19 23 23 O 1.21693 * 120.00344 * 0.02562 * 22 21 20 24 24 C 1.46664 * 119.99440 * 180.27651 * 22 21 20 25 25 C 1.36544 * 125.98488 * 179.72868 * 24 22 21 26 26 C 1.40365 * 106.70879 * 179.97438 * 25 24 22 27 27 C 1.35127 * 107.11101 * 359.97438 * 26 25 24 28 28 O 1.33925 * 108.77343 * 359.77343 * 27 26 25 29 29 H 0.97001 * 120.00242 * 359.97438 * 1 2 3 30 30 H 1.08994 * 110.36869 * 274.74741 * 10 9 7 31 31 H 1.09001 * 110.36526 * 36.95924 * 10 9 7 32 32 H 1.08995 * 111.00722 * 155.08846 * 11 10 9 33 33 H 1.09004 * 111.00049 * 278.89514 * 11 10 9 34 34 H 1.09002 * 110.85996 * 206.30281 * 12 11 10 35 35 H 1.09005 * 110.69478 * 82.94917 * 12 11 10 36 36 H 1.09001 * 109.47368 * 64.50065 * 15 13 9 37 37 H 1.09004 * 109.47204 * 304.50139 * 15 13 9 38 38 H 0.96998 * 119.99466 * 5.11233 * 16 15 13 39 39 H 1.08998 * 109.47133 * 60.00136 * 19 17 16 40 40 H 1.09004 * 109.46965 * 300.00423 * 19 17 16 41 41 H 1.09010 * 109.46552 * 59.99996 * 20 19 17 42 42 H 1.08997 * 109.46786 * 300.00235 * 20 19 17 43 43 H 0.97000 * 120.00522 * 0.02562 * 21 20 19 44 44 H 1.08005 * 126.64857 * 359.97438 * 25 24 22 45 45 H 1.08000 * 126.44420 * 179.97438 * 26 25 24 46 46 H 1.08005 * 125.61441 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1074 -2.5529 -0.3055 11 6 -0.2462 -4.0223 -0.7758 12 6 0.7666 -4.7469 0.1537 13 6 1.8975 -3.7077 0.3044 14 1 2.7034 -3.9329 -0.3942 15 6 2.4320 -3.7245 1.7379 16 7 3.0949 -5.0050 1.9970 17 6 3.5545 -5.2883 3.2319 18 8 3.4189 -4.4833 4.1288 19 6 4.2369 -6.6052 3.4982 20 6 4.6581 -6.6735 4.9675 21 7 5.3210 -7.9540 5.2265 22 6 5.7804 -8.2372 6.4615 23 8 5.6443 -7.4295 7.3615 24 6 6.4494 -9.5167 6.7193 25 6 6.9640 -9.9262 7.9160 26 6 7.5055 -11.2041 7.7063 27 6 7.2998 -11.5149 6.4074 28 8 6.6585 -10.4980 5.8173 29 1 -0.4850 0.8400 0.0004 30 1 -0.7075 -2.3824 0.5883 31 1 -0.4074 -1.8688 -1.0992 32 1 -1.2591 -4.3906 -0.6134 33 1 0.0420 -4.1265 -1.8219 34 1 1.1398 -5.6579 -0.3142 35 1 0.3133 -4.9665 1.1204 36 1 1.6046 -3.5961 2.4358 37 1 3.1470 -2.9122 1.8687 38 1 3.2031 -5.6490 1.2797 39 1 5.1182 -6.6928 2.8628 40 1 3.5487 -7.4218 3.2795 41 1 3.7765 -6.5861 5.6026 42 1 5.3461 -5.8569 5.1865 43 1 5.4298 -8.5977 4.5090 44 1 6.9559 -9.3738 8.8440 45 1 7.9945 -11.8226 8.4443 46 1 7.5992 -12.4339 5.9256 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713517937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:05 Heat of formation + Delta-G solvation = -63.808164 kcal Electronic energy + Delta-G solvation = -27585.940324 eV Core-core repulsion = 23476.719661 eV Total energy + Delta-G solvation = -4109.220664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.63358 -41.03322 -40.44145 -39.25927 -36.50117 -35.72607 -34.40167 -34.05289 -32.61076 -31.42088 -30.82758 -29.98836 -26.84755 -26.21350 -24.90150 -23.42134 -22.66436 -22.05131 -21.67118 -21.33932 -20.97847 -19.62913 -18.82260 -18.06213 -17.48138 -17.39222 -17.15777 -16.93648 -16.79981 -16.50577 -16.01592 -15.77689 -15.61014 -15.22207 -15.02187 -14.46424 -14.28142 -14.08121 -13.95045 -13.92510 -13.65053 -13.55238 -13.38052 -12.98406 -12.97747 -12.85578 -12.65902 -12.49861 -12.06914 -11.86841 -11.70901 -11.63925 -11.48662 -11.38327 -11.05271 -10.96189 -10.68017 -10.40626 -10.04646 -9.64784 -8.85761 -7.89428 -5.26725 0.00720 1.42859 1.43045 1.46654 1.51855 1.55297 1.65779 1.98242 2.05304 2.40400 2.53233 3.30473 3.55175 3.72510 3.77815 3.93697 3.95638 4.00717 4.05765 4.05876 4.13781 4.28741 4.47359 4.50748 4.56990 4.61645 4.74304 4.81919 4.84771 4.92820 4.96777 4.98763 5.02208 5.16424 5.16981 5.23931 5.39356 5.39832 5.47069 5.60019 5.66773 5.78471 5.81817 6.22878 6.36993 6.62607 6.95121 7.08451 7.32975 7.76309 8.41858 9.21339 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021773 B = 0.001791 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.683306 B =15632.916472 C =16484.094289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.284 1.284 7 C -0.239 4.239 8 H 0.077 0.923 9 N -0.612 5.612 10 C 0.172 3.828 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.148 3.852 14 H 0.055 0.945 15 C 0.127 3.873 16 N -0.704 5.704 17 C 0.506 3.494 18 O -0.597 6.597 19 C -0.132 4.132 20 C 0.137 3.863 21 N -0.701 5.701 22 C 0.598 3.402 23 O -0.566 6.566 24 C -0.108 4.108 25 C -0.129 4.129 26 C -0.237 4.237 27 C 0.016 3.984 28 O -0.166 6.166 29 H 0.247 0.753 30 H -0.011 1.011 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.420 0.580 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.423 0.577 44 H 0.153 0.847 45 H 0.181 0.819 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.639 -30.898 5.303 34.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.255 4.255 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.210 1.210 7 C -0.369 4.369 8 H 0.095 0.905 9 N -0.336 5.336 10 C 0.047 3.953 11 C -0.172 4.172 12 C -0.149 4.149 13 C 0.041 3.959 14 H 0.073 0.927 15 C 0.000 4.000 16 N -0.357 5.357 17 C 0.293 3.707 18 O -0.478 6.478 19 C -0.172 4.172 20 C 0.013 3.987 21 N -0.353 5.353 22 C 0.385 3.615 23 O -0.447 6.447 24 C -0.160 4.160 25 C -0.150 4.150 26 C -0.256 4.256 27 C -0.053 4.053 28 O -0.061 6.061 29 H 0.056 0.944 30 H 0.007 0.993 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.257 0.743 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.261 0.739 44 H 0.171 0.829 45 H 0.199 0.801 46 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 13.260 -29.464 6.179 32.896 hybrid contribution 0.194 1.383 0.111 1.400 sum 13.453 -28.081 6.290 31.767 Atomic orbital electron populations 1.70133 1.06277 1.25432 1.57515 1.25698 0.96524 1.01055 1.02241 0.85268 0.77336 0.79285 0.78167 1.19759 1.22009 1.21030 1.19260 0.90750 0.83642 1.43224 0.90505 1.44753 1.06874 1.02265 1.79722 1.21270 0.84157 0.93630 0.96202 1.22909 0.99705 0.95138 0.99483 1.22647 0.95026 0.97421 0.99779 1.21366 0.96198 0.86618 0.91759 0.92705 1.21666 0.95114 0.84702 0.98485 1.45796 1.58773 1.19473 1.11624 1.21162 0.78192 0.89331 0.81992 1.90756 1.59105 1.52140 1.45827 1.21736 1.04183 0.94945 0.96306 1.20921 0.97092 0.84530 0.96201 1.45639 1.58609 1.20058 1.10973 1.16825 0.77804 0.83796 0.83049 1.90898 1.59351 1.48704 1.45778 1.21665 1.12089 0.91766 0.90479 1.22275 0.97758 0.97086 0.97858 1.22223 1.07758 0.96994 0.98622 1.25420 0.94467 0.92269 0.93153 1.84044 1.59904 1.23719 1.38426 0.94350 0.99304 0.94680 0.90046 0.91001 0.87189 0.91805 0.94887 0.95186 0.74253 0.84377 0.84099 0.92452 0.92618 0.73904 0.82891 0.80118 0.72595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.51 10.58 21.65 0.23 -57.28 16 2 C -0.06 -3.54 5.47 84.86 0.46 -3.08 16 3 Si 0.97 46.79 29.55 68.60 2.03 48.81 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 7 C -0.24 -13.34 9.72 84.03 0.82 -12.52 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.61 -30.37 3.13 -668.25 -2.09 -32.46 16 10 C 0.17 8.33 5.42 86.85 0.47 8.80 16 11 C -0.13 -4.47 7.09 32.07 0.23 -4.24 16 12 C -0.11 -3.14 6.22 31.87 0.20 -2.94 16 13 C 0.15 5.41 3.19 45.34 0.14 5.55 16 14 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 15 C 0.13 4.77 5.10 86.38 0.44 5.21 16 16 N -0.70 -17.62 5.36 -463.06 -2.48 -20.10 16 17 C 0.51 13.53 7.83 87.66 0.69 14.22 16 18 O -0.60 -23.65 15.98 -3.01 -0.05 -23.70 16 19 C -0.13 -1.83 5.81 29.85 0.17 -1.66 16 20 C 0.14 2.89 4.96 86.38 0.43 3.31 16 21 N -0.70 -11.68 5.55 -467.09 -2.59 -14.28 16 22 C 0.60 13.84 7.79 86.44 0.67 14.51 16 23 O -0.57 -18.39 16.86 -4.33 -0.07 -18.46 16 24 C -0.11 -1.96 7.13 24.08 0.17 -1.79 16 25 C -0.13 -2.12 10.62 22.39 0.24 -1.88 16 26 C -0.24 -2.16 10.87 22.07 0.24 -1.92 16 27 C 0.02 0.10 12.08 67.10 0.81 0.91 16 28 O -0.17 -1.98 10.40 -5.00 -0.05 -2.04 16 29 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16 30 H -0.01 -0.61 8.06 -2.39 -0.02 -0.62 16 31 H 0.03 1.92 6.94 -2.39 -0.02 1.90 16 32 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 33 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.06 1.83 7.78 -2.38 -0.02 1.82 16 36 H 0.03 1.45 8.03 -2.39 -0.02 1.43 16 37 H 0.03 1.34 7.86 -2.38 -0.02 1.32 16 38 H 0.42 6.54 8.39 -92.71 -0.78 5.76 16 39 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 1.51 8.10 -2.38 -0.02 1.49 16 42 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 43 H 0.42 3.79 8.23 -92.71 -0.76 3.02 16 44 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 45 H 0.18 0.66 8.06 -2.91 -0.02 0.63 16 46 H 0.26 -1.15 8.06 -2.91 -0.02 -1.17 16 Total: -1.00 -87.68 388.66 0.57 -87.11 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -0.53 Total: 9.92 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 6.18 Total: 22.47 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -6.93 Total: -124.13 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.17 Total: -44.19 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -87.68 0.57 -87.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713517937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.303 kcal (2) G-P(sol) polarization free energy of solvation -87.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds