Wall clock time and date at job start Tue Mar 31 2020 18:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00277 * 2 1 4 4 H 1.48498 * 109.47109 * 90.00237 * 3 2 1 5 5 H 1.48498 * 109.47255 * 330.00429 * 3 2 1 6 6 H 1.48502 * 109.47497 * 210.00205 * 3 2 1 7 7 C 1.38816 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99846 * 155.36232 * 7 2 1 9 9 N 1.36938 * 119.99747 * 335.34863 * 7 2 1 10 10 C 1.47421 * 125.65147 * 334.85870 * 9 7 2 11 11 C 1.54907 * 104.83379 * 204.08841 * 10 9 7 12 12 C 1.55155 * 101.58227 * 322.98918 * 11 10 9 13 13 C 1.47023 * 125.64312 * 154.54856 * 9 7 2 14 14 H 1.08997 * 109.88153 * 59.56675 * 13 9 7 15 15 C 1.52999 * 109.88367 * 298.39564 * 13 9 7 16 16 N 1.46503 * 109.47027 * 59.65951 * 15 13 9 17 17 C 1.34769 * 119.99906 * 185.93850 * 16 15 13 18 18 O 1.21282 * 120.00527 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99754 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.46922 * 179.97438 * 19 17 16 21 21 N 1.46503 * 109.47074 * 179.97438 * 20 19 17 22 22 C 1.34780 * 119.99992 * 179.97438 * 21 20 19 23 23 O 1.21691 * 119.99866 * 0.02562 * 22 21 20 24 24 C 1.46654 * 119.99701 * 180.02562 * 22 21 20 25 25 C 1.36542 * 125.98547 * 180.02562 * 24 22 21 26 26 C 1.40365 * 106.70931 * 179.97438 * 25 24 22 27 27 C 1.35126 * 107.11105 * 359.97438 * 26 25 24 28 28 O 1.33928 * 108.77339 * 359.77005 * 27 26 25 29 29 H 0.97001 * 120.00201 * 174.04696 * 1 2 3 30 30 H 1.08996 * 110.36699 * 322.93392 * 10 9 7 31 31 H 1.09002 * 110.36323 * 85.24707 * 10 9 7 32 32 H 1.08992 * 111.00256 * 81.06500 * 11 10 9 33 33 H 1.09001 * 111.00612 * 204.91861 * 11 10 9 34 34 H 1.09005 * 110.71940 * 153.86205 * 12 11 10 35 35 H 1.08991 * 110.72210 * 276.96317 * 12 11 10 36 36 H 1.08997 * 109.46894 * 179.66029 * 15 13 9 37 37 H 1.09001 * 109.47219 * 299.65798 * 15 13 9 38 38 H 0.97000 * 119.99856 * 5.93724 * 16 15 13 39 39 H 1.08991 * 109.47423 * 299.99647 * 19 17 16 40 40 H 1.09004 * 109.47233 * 60.00120 * 19 17 16 41 41 H 1.09001 * 109.47358 * 299.99715 * 20 19 17 42 42 H 1.08997 * 109.47511 * 60.00065 * 20 19 17 43 43 H 0.97000 * 119.99856 * 0.02562 * 21 20 19 44 44 H 1.07999 * 126.64660 * 359.97438 * 25 24 22 45 45 H 1.08002 * 126.43983 * 179.97438 * 26 25 24 46 46 H 1.08008 * 125.61373 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4477 2.6527 -0.6999 6 1 3.5478 1.4402 -0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0165 -1.2446 -0.3905 9 7 1.4190 -2.3343 0.4936 10 6 0.3356 -2.3718 1.4927 11 6 0.4530 -3.7683 2.1527 12 6 0.8557 -4.6519 0.9426 13 6 1.7554 -3.7134 0.1108 14 1 2.8033 -3.9146 0.3329 15 6 1.4878 -3.9192 -1.3814 16 7 2.3038 -2.9823 -2.1577 17 6 2.1462 -2.8980 -3.4935 18 8 1.3291 -3.5981 -4.0531 19 6 2.9861 -1.9346 -4.2920 20 6 2.6118 -2.0373 -5.7720 21 7 3.4278 -1.1004 -6.5482 22 6 3.2708 -1.0168 -7.8842 23 8 2.4509 -1.7192 -8.4456 24 6 4.0881 -0.0792 -8.6613 25 6 4.0308 0.1054 -10.0129 26 6 4.9803 1.0905 -10.3263 27 6 5.5677 1.4597 -9.1667 28 8 5.0237 0.7566 -8.1650 29 1 -0.4850 -0.8355 -0.0871 30 1 0.4779 -1.5875 2.2361 31 1 -0.6334 -2.2625 1.0056 32 1 1.2299 -3.7750 2.9171 33 1 -0.5037 -4.0861 2.5673 34 1 1.4115 -5.5292 1.2737 35 1 -0.0241 -4.9475 0.3712 36 1 1.7449 -4.9414 -1.6590 37 1 0.4328 -3.7407 -1.5894 38 1 2.9576 -2.4226 -1.7102 39 1 2.8062 -0.9186 -3.9411 40 1 4.0404 -2.1812 -4.1663 41 1 2.7920 -3.0535 -6.1227 42 1 1.5575 -1.7910 -5.8981 43 1 4.0816 -0.5407 -6.1007 44 1 3.3808 -0.4072 -10.7066 45 1 5.2001 1.4801 -11.3093 46 1 6.3448 2.2028 -9.0640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713517938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:09 Heat of formation + Delta-G solvation = -39.777939 kcal Electronic energy + Delta-G solvation = -28485.997107 eV Core-core repulsion = 24377.818472 eV Total energy + Delta-G solvation = -4108.178635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.94962 -39.73413 -39.13332 -37.82088 -35.34480 -33.90851 -33.36376 -32.92099 -31.46750 -30.01003 -29.27869 -28.80673 -25.47481 -24.56236 -23.41712 -22.36469 -21.94671 -20.70512 -20.54141 -19.79924 -19.58592 -18.71926 -17.61541 -16.71064 -16.65005 -16.47423 -15.92398 -15.64462 -15.38043 -15.10177 -14.57393 -14.32010 -14.18557 -13.81077 -13.51689 -13.39351 -13.29500 -13.13007 -13.05491 -12.87156 -12.53610 -12.12435 -11.86804 -11.80834 -11.45392 -11.19089 -10.80432 -10.64634 -10.52975 -10.50472 -10.37032 -10.31155 -10.19498 -10.05988 -9.60927 -9.36611 -9.33028 -8.93419 -8.56864 -8.32691 -7.01644 -6.16932 -3.34580 0.80591 2.06246 2.39698 2.95958 3.00735 3.13025 3.37452 3.42224 3.57441 3.86965 4.40354 4.45385 4.59564 4.69226 4.86095 5.11477 5.14250 5.22725 5.29517 5.32296 5.32826 5.43630 5.46187 5.58450 5.58826 5.66751 5.92506 5.95451 5.96656 5.98006 6.01030 6.13649 6.16527 6.20679 6.33272 6.40118 6.45553 6.52612 6.87507 6.90269 7.02554 7.10888 7.27776 7.65073 7.90914 8.16186 8.35389 8.77965 8.91285 9.67625 10.29107 11.11692 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014233 B = 0.002587 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.821435 B =10822.496041 C =12293.683220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.018 4.018 3 Si 1.065 2.935 4 H -0.292 1.292 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.335 4.335 8 H 0.058 0.942 9 N -0.592 5.592 10 C 0.141 3.859 11 C -0.136 4.136 12 C -0.123 4.123 13 C 0.143 3.857 14 H 0.040 0.960 15 C 0.117 3.883 16 N -0.696 5.696 17 C 0.514 3.486 18 O -0.560 6.560 19 C -0.155 4.155 20 C 0.136 3.864 21 N -0.718 5.718 22 C 0.601 3.399 23 O -0.517 6.517 24 C -0.076 4.076 25 C -0.122 4.122 26 C -0.226 4.226 27 C -0.007 4.007 28 O -0.164 6.164 29 H 0.272 0.728 30 H 0.047 0.953 31 H 0.027 0.973 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.409 0.591 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.406 0.594 44 H 0.161 0.839 45 H 0.157 0.843 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.882 -0.329 -11.095 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.223 4.223 3 Si 0.895 3.105 4 H -0.220 1.220 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.464 4.464 8 H 0.075 0.925 9 N -0.318 5.318 10 C 0.016 3.984 11 C -0.175 4.175 12 C -0.161 4.161 13 C 0.036 3.964 14 H 0.058 0.942 15 C -0.009 4.009 16 N -0.348 5.348 17 C 0.299 3.701 18 O -0.440 6.440 19 C -0.195 4.195 20 C 0.013 3.987 21 N -0.369 5.369 22 C 0.387 3.613 23 O -0.394 6.394 24 C -0.128 4.128 25 C -0.143 4.143 26 C -0.245 4.245 27 C -0.077 4.077 28 O -0.059 6.059 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.248 0.752 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.240 0.760 44 H 0.178 0.822 45 H 0.174 0.826 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 10.641 0.405 -11.473 15.653 hybrid contribution 0.828 -0.879 0.112 1.213 sum 11.469 -0.474 -11.361 16.150 Atomic orbital electron populations 1.70713 1.06669 1.30722 1.46528 1.25790 0.96535 1.01178 0.98759 0.83519 0.74319 0.75997 0.76689 1.21972 1.21578 1.21799 1.19449 0.96325 0.87197 1.43384 0.92496 1.44597 1.42824 0.99964 1.44422 1.21556 0.92129 0.93604 0.91102 1.22785 1.00291 0.97433 0.96942 1.22494 0.99415 0.97217 0.96990 1.21323 0.97005 0.87452 0.90659 0.94242 1.21905 0.95593 0.90755 0.92661 1.46043 1.40855 1.41737 1.06180 1.20109 0.83667 0.83333 0.82997 1.90676 1.37036 1.45491 1.70825 1.21781 1.01272 1.01859 0.94601 1.21132 0.95765 0.93301 0.88505 1.45923 1.41557 1.42610 1.06824 1.16511 0.81832 0.81261 0.81727 1.90912 1.34940 1.43181 1.70417 1.22146 0.97448 0.99303 0.93915 1.22000 0.99743 0.98497 0.94061 1.21876 1.00652 1.01949 1.00044 1.24432 0.99995 0.97972 0.85333 1.84073 1.42553 1.42342 1.36907 0.91580 0.93420 0.95491 0.91878 0.91962 0.91782 0.91564 0.93418 0.92072 0.75191 0.87764 0.88601 0.90194 0.89990 0.75960 0.82185 0.82575 0.77294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.01 13.06 55.49 0.72 -25.29 16 2 C -0.02 -0.48 5.18 -17.43 -0.09 -0.57 16 3 Si 1.06 23.50 29.98 -169.99 -5.10 18.40 16 4 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.34 -8.25 8.16 -15.06 -0.12 -8.37 16 8 H 0.06 1.34 6.47 -52.49 -0.34 1.00 16 9 N -0.59 -13.45 2.94 -162.57 -0.48 -13.92 16 10 C 0.14 3.09 5.51 -2.53 -0.01 3.07 16 11 C -0.14 -2.30 7.09 -24.58 -0.17 -2.47 16 12 C -0.12 -1.97 6.48 -24.89 -0.16 -2.13 16 13 C 0.14 2.70 3.37 -66.94 -0.23 2.47 16 14 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 15 C 0.12 2.23 5.22 -4.04 -0.02 2.21 16 16 N -0.70 -12.94 4.81 -60.29 -0.29 -13.23 16 17 C 0.51 9.40 7.83 -10.99 -0.09 9.31 16 18 O -0.56 -12.10 15.97 5.56 0.09 -12.01 16 19 C -0.15 -2.11 5.81 -27.88 -0.16 -2.28 16 20 C 0.14 1.94 4.96 -4.04 -0.02 1.92 16 21 N -0.72 -8.80 5.55 -61.62 -0.34 -9.15 16 22 C 0.60 8.39 7.79 -12.86 -0.10 8.29 16 23 O -0.52 -8.97 16.86 5.20 0.09 -8.88 16 24 C -0.08 -0.89 7.13 -36.80 -0.26 -1.16 16 25 C -0.12 -1.27 10.62 -39.39 -0.42 -1.69 16 26 C -0.23 -1.74 10.87 -39.89 -0.43 -2.18 16 27 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 28 O -0.16 -1.62 10.40 5.00 0.05 -1.57 16 29 H 0.27 7.96 6.09 -40.82 -0.25 7.71 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.03 0.65 6.69 -51.93 -0.35 0.30 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.04 7.84 -51.93 -0.41 0.64 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.34 8.11 -51.93 -0.42 0.92 16 38 H 0.41 7.47 5.75 -40.82 -0.23 7.23 16 39 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 42 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 43 H 0.41 3.94 8.23 -40.82 -0.34 3.60 16 44 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.21 0.58 8.06 -52.48 -0.42 0.16 16 LS Contribution 383.66 15.07 5.78 5.78 Total: -1.00 -33.46 383.66 -8.03 -41.48 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -6.62 Total: 11.63 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -1.93 Total: 6.74 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: -0.38 Total: -61.59 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.23 Total: -22.46 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.10 Total: 18.40 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.46 -8.03 -41.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713517938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.706 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds