Wall clock time and date at job start Tue Mar 31 2020 18:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00277 * 2 1 4 4 H 1.48498 * 109.47109 * 90.00237 * 3 2 1 5 5 H 1.48498 * 109.47255 * 330.00429 * 3 2 1 6 6 H 1.48502 * 109.47497 * 210.00205 * 3 2 1 7 7 C 1.38816 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99846 * 155.36232 * 7 2 1 9 9 N 1.36938 * 119.99747 * 335.34863 * 7 2 1 10 10 C 1.47421 * 125.65147 * 334.85870 * 9 7 2 11 11 C 1.54907 * 104.83379 * 204.08841 * 10 9 7 12 12 C 1.55155 * 101.58227 * 322.98918 * 11 10 9 13 13 C 1.47023 * 125.64312 * 154.54856 * 9 7 2 14 14 H 1.08997 * 109.88153 * 59.56675 * 13 9 7 15 15 C 1.52999 * 109.88367 * 298.39564 * 13 9 7 16 16 N 1.46503 * 109.47027 * 59.65951 * 15 13 9 17 17 C 1.34769 * 119.99906 * 185.93850 * 16 15 13 18 18 O 1.21282 * 120.00527 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99754 * 180.02562 * 17 16 15 20 20 C 1.53002 * 109.46922 * 179.97438 * 19 17 16 21 21 N 1.46503 * 109.47074 * 179.97438 * 20 19 17 22 22 C 1.34780 * 119.99992 * 179.97438 * 21 20 19 23 23 O 1.21691 * 119.99866 * 0.02562 * 22 21 20 24 24 C 1.46654 * 119.99701 * 180.02562 * 22 21 20 25 25 C 1.36542 * 125.98547 * 180.02562 * 24 22 21 26 26 C 1.40365 * 106.70931 * 179.97438 * 25 24 22 27 27 C 1.35126 * 107.11105 * 359.97438 * 26 25 24 28 28 O 1.33928 * 108.77339 * 359.77005 * 27 26 25 29 29 H 0.97001 * 120.00201 * 174.04696 * 1 2 3 30 30 H 1.08996 * 110.36699 * 322.93392 * 10 9 7 31 31 H 1.09002 * 110.36323 * 85.24707 * 10 9 7 32 32 H 1.08992 * 111.00256 * 81.06500 * 11 10 9 33 33 H 1.09001 * 111.00612 * 204.91861 * 11 10 9 34 34 H 1.09005 * 110.71940 * 153.86205 * 12 11 10 35 35 H 1.08991 * 110.72210 * 276.96317 * 12 11 10 36 36 H 1.08997 * 109.46894 * 179.66029 * 15 13 9 37 37 H 1.09001 * 109.47219 * 299.65798 * 15 13 9 38 38 H 0.97000 * 119.99856 * 5.93724 * 16 15 13 39 39 H 1.08991 * 109.47423 * 299.99647 * 19 17 16 40 40 H 1.09004 * 109.47233 * 60.00120 * 19 17 16 41 41 H 1.09001 * 109.47358 * 299.99715 * 20 19 17 42 42 H 1.08997 * 109.47511 * 60.00065 * 20 19 17 43 43 H 0.97000 * 119.99856 * 0.02562 * 21 20 19 44 44 H 1.07999 * 126.64660 * 359.97438 * 25 24 22 45 45 H 1.08002 * 126.43983 * 179.97438 * 26 25 24 46 46 H 1.08008 * 125.61373 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4477 2.6527 -0.6999 6 1 3.5478 1.4402 -0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0165 -1.2446 -0.3905 9 7 1.4190 -2.3343 0.4936 10 6 0.3356 -2.3718 1.4927 11 6 0.4530 -3.7683 2.1527 12 6 0.8557 -4.6519 0.9426 13 6 1.7554 -3.7134 0.1108 14 1 2.8033 -3.9146 0.3329 15 6 1.4878 -3.9192 -1.3814 16 7 2.3038 -2.9823 -2.1577 17 6 2.1462 -2.8980 -3.4935 18 8 1.3291 -3.5981 -4.0531 19 6 2.9861 -1.9346 -4.2920 20 6 2.6118 -2.0373 -5.7720 21 7 3.4278 -1.1004 -6.5482 22 6 3.2708 -1.0168 -7.8842 23 8 2.4509 -1.7192 -8.4456 24 6 4.0881 -0.0792 -8.6613 25 6 4.0308 0.1054 -10.0129 26 6 4.9803 1.0905 -10.3263 27 6 5.5677 1.4597 -9.1667 28 8 5.0237 0.7566 -8.1650 29 1 -0.4850 -0.8355 -0.0871 30 1 0.4779 -1.5875 2.2361 31 1 -0.6334 -2.2625 1.0056 32 1 1.2299 -3.7750 2.9171 33 1 -0.5037 -4.0861 2.5673 34 1 1.4115 -5.5292 1.2737 35 1 -0.0241 -4.9475 0.3712 36 1 1.7449 -4.9414 -1.6590 37 1 0.4328 -3.7407 -1.5894 38 1 2.9576 -2.4226 -1.7102 39 1 2.8062 -0.9186 -3.9411 40 1 4.0404 -2.1812 -4.1663 41 1 2.7920 -3.0535 -6.1227 42 1 1.5575 -1.7910 -5.8981 43 1 4.0816 -0.5407 -6.1007 44 1 3.3808 -0.4072 -10.7066 45 1 5.2001 1.4801 -11.3093 46 1 6.3448 2.2028 -9.0640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713517938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:08 Heat of formation + Delta-G solvation = -64.126497 kcal Electronic energy + Delta-G solvation = -28487.052939 eV Core-core repulsion = 24377.818472 eV Total energy + Delta-G solvation = -4109.234468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.65394 -41.02641 -40.46390 -39.40381 -36.51484 -35.49027 -34.73828 -34.07010 -32.63017 -31.16038 -30.83254 -30.19923 -26.97094 -26.04964 -24.79775 -23.43541 -22.67838 -22.13656 -21.59762 -21.45690 -20.96258 -19.73610 -19.28063 -18.04486 -17.52304 -17.35327 -17.27830 -16.87605 -16.64389 -16.61249 -15.92854 -15.83392 -15.56705 -15.23925 -14.99871 -14.77440 -14.55689 -14.10178 -14.02148 -13.94567 -13.64258 -13.56165 -13.43566 -13.04882 -12.88570 -12.56842 -12.49714 -12.30049 -12.08395 -11.87740 -11.82922 -11.65664 -11.52425 -11.46269 -11.06547 -10.89291 -10.48866 -10.43534 -9.91946 -9.66893 -8.92834 -8.17738 -5.32965 -0.01161 1.41585 1.54626 1.60658 1.66003 1.68561 1.83521 2.01469 2.03113 2.53823 2.68488 3.32115 3.52153 3.54235 3.75301 3.85976 3.93789 3.95273 3.98970 4.01606 4.11491 4.19472 4.36831 4.43213 4.46086 4.59776 4.65080 4.74908 4.77410 4.79536 4.85210 4.90676 4.94588 4.96952 5.10399 5.12479 5.14432 5.34761 5.38738 5.45683 5.58660 5.76577 5.80624 6.33364 6.38016 6.66561 6.90198 6.95904 7.30791 7.76149 8.40435 9.09499 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014233 B = 0.002587 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.821435 B =10822.496041 C =12293.683220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.078 4.078 3 Si 1.108 2.892 4 H -0.293 1.293 5 H -0.307 1.307 6 H -0.252 1.252 7 C -0.319 4.319 8 H 0.074 0.926 9 N -0.610 5.610 10 C 0.141 3.859 11 C -0.121 4.121 12 C -0.115 4.115 13 C 0.140 3.860 14 H 0.057 0.943 15 C 0.121 3.879 16 N -0.697 5.697 17 C 0.506 3.494 18 O -0.599 6.599 19 C -0.140 4.140 20 C 0.146 3.854 21 N -0.705 5.705 22 C 0.598 3.402 23 O -0.564 6.564 24 C -0.110 4.110 25 C -0.125 4.125 26 C -0.235 4.235 27 C 0.014 3.986 28 O -0.169 6.169 29 H 0.253 0.747 30 H 0.018 0.982 31 H -0.005 1.005 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.023 0.977 38 H 0.412 0.588 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.420 0.580 44 H 0.157 0.843 45 H 0.185 0.815 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.624 0.002 -11.145 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.275 4.275 3 Si 0.934 3.066 4 H -0.221 1.221 5 H -0.234 1.234 6 H -0.176 1.176 7 C -0.448 4.448 8 H 0.091 0.909 9 N -0.336 5.336 10 C 0.015 3.985 11 C -0.159 4.159 12 C -0.153 4.153 13 C 0.034 3.966 14 H 0.075 0.925 15 C -0.005 4.005 16 N -0.349 5.349 17 C 0.293 3.707 18 O -0.482 6.482 19 C -0.180 4.180 20 C 0.022 3.978 21 N -0.356 5.356 22 C 0.386 3.614 23 O -0.446 6.446 24 C -0.162 4.162 25 C -0.146 4.146 26 C -0.253 4.253 27 C -0.055 4.055 28 O -0.065 6.065 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.013 0.987 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.252 0.748 39 H 0.131 0.869 40 H 0.155 0.845 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.258 0.742 44 H 0.175 0.825 45 H 0.202 0.798 46 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 14.454 0.723 -11.495 18.482 hybrid contribution -0.272 -0.991 0.071 1.030 sum 14.182 -0.268 -11.424 18.213 Atomic orbital electron populations 1.70849 1.08107 1.29495 1.50915 1.27038 0.96440 1.04659 0.99347 0.82948 0.74708 0.72227 0.76705 1.22064 1.23435 1.17626 1.19830 0.96608 0.87655 1.40685 0.90904 1.44913 1.42508 1.01266 1.44873 1.21465 0.90567 0.96022 0.90441 1.22698 1.02080 0.93846 0.97262 1.22528 0.99320 0.97627 0.95848 1.21529 0.98414 0.85998 0.90690 0.92529 1.21797 0.93592 0.91968 0.93145 1.46063 1.40671 1.41709 1.06439 1.20873 0.83444 0.83367 0.82992 1.90660 1.38807 1.47262 1.71460 1.21716 1.02552 1.00822 0.92873 1.20841 0.94517 0.93144 0.89344 1.45722 1.41300 1.42195 1.06386 1.16836 0.81469 0.81094 0.81981 1.90874 1.37093 1.45269 1.71317 1.21667 0.99443 1.01052 0.94018 1.22279 0.99917 0.98744 0.93668 1.22230 0.99972 1.01330 1.01814 1.25440 0.99076 0.96657 0.84331 1.84061 1.42238 1.42344 1.37820 0.93671 0.96381 0.98714 0.90448 0.89779 0.87909 0.91675 0.91389 0.95847 0.74843 0.86868 0.84506 0.91342 0.93049 0.74187 0.82546 0.79799 0.72683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.87 13.06 21.65 0.28 -56.58 16 2 C -0.08 -4.14 5.18 84.86 0.44 -3.70 16 3 Si 1.11 47.18 29.98 68.60 2.06 49.24 16 4 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.31 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 7 C -0.32 -15.51 8.16 84.03 0.69 -14.83 16 8 H 0.07 3.27 6.47 -2.91 -0.02 3.25 16 9 N -0.61 -27.58 2.94 -668.24 -1.96 -29.54 16 10 C 0.14 6.28 5.51 86.85 0.48 6.76 16 11 C -0.12 -3.84 7.09 31.98 0.23 -3.62 16 12 C -0.11 -3.39 6.48 31.79 0.21 -3.18 16 13 C 0.14 5.04 3.37 45.35 0.15 5.19 16 14 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 15 C 0.12 4.57 5.22 86.38 0.45 5.02 16 16 N -0.70 -25.36 4.81 -463.06 -2.23 -27.58 16 17 C 0.51 18.44 7.83 87.66 0.69 19.13 16 18 O -0.60 -26.62 15.97 -3.04 -0.05 -26.67 16 19 C -0.14 -3.64 5.81 29.85 0.17 -3.47 16 20 C 0.15 4.24 4.96 86.38 0.43 4.66 16 21 N -0.70 -17.10 5.55 -467.09 -2.59 -19.69 16 22 C 0.60 17.12 7.79 86.44 0.67 17.79 16 23 O -0.56 -20.70 16.86 -4.32 -0.07 -20.78 16 24 C -0.11 -2.53 7.13 24.07 0.17 -2.36 16 25 C -0.13 -2.51 10.62 22.39 0.24 -2.27 16 26 C -0.23 -2.95 10.87 22.07 0.24 -2.71 16 27 C 0.01 0.15 12.08 67.10 0.81 0.96 16 28 O -0.17 -2.96 10.40 -5.02 -0.05 -3.01 16 29 H 0.25 15.68 6.09 -92.71 -0.56 15.11 16 30 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.00 -0.25 6.69 -2.39 -0.02 -0.27 16 32 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.06 1.95 7.84 -2.39 -0.02 1.93 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 37 H 0.02 1.05 8.11 -2.39 -0.02 1.03 16 38 H 0.41 14.29 5.75 -92.71 -0.53 13.75 16 39 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.07 2.15 8.10 -2.39 -0.02 2.13 16 42 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 43 H 0.42 7.50 8.23 -92.71 -0.76 6.74 16 44 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 45 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 46 H 0.26 -0.01 8.06 -2.91 -0.02 -0.04 16 Total: -1.00 -78.96 383.66 1.37 -77.59 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -0.08 Total: 33.65 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: 6.06 Total: 23.38 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -6.50 Total: -133.40 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.17 Total: -50.46 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.06 Total: 49.24 kcal Total: -78.96 1.37 -77.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713517938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.468 kcal (2) G-P(sol) polarization free energy of solvation -78.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds