Wall clock time and date at job start Tue Mar 31 2020 18:57:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86799 * 119.99797 * 2 1
4 4 H 1.48505 * 109.47255 * 240.00348 * 3 2 1
5 5 H 1.48506 * 109.47150 * 0.02562 * 3 2 1
6 6 H 1.48499 * 109.47193 * 120.00095 * 3 2 1
7 7 C 1.38809 * 120.00232 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99925 * 180.02562 * 7 2 1
9 9 N 1.36932 * 120.00090 * 359.97438 * 7 2 1
10 10 C 1.46499 * 120.00116 * 180.02562 * 9 7 2
11 11 H 1.08998 * 109.46787 * 35.00599 * 10 9 7
12 12 C 1.53008 * 109.46973 * 155.00432 * 10 9 7
13 13 N 1.46502 * 109.47144 * 304.99895 * 12 10 9
14 14 C 1.34771 * 120.00230 * 179.97438 * 13 12 10
15 15 O 1.21287 * 119.99435 * 0.02562 * 14 13 12
16 16 C 1.50693 * 120.00299 * 180.02562 * 14 13 12
17 17 C 1.53000 * 109.47435 * 180.02562 * 16 14 13
18 18 N 1.46493 * 109.47245 * 180.02562 * 17 16 14
19 19 C 1.34778 * 119.99793 * 179.97438 * 18 17 16
20 20 O 1.21695 * 120.00192 * 359.97438 * 19 18 17
21 21 C 1.46661 * 119.99796 * 179.97438 * 19 18 17
22 22 C 1.36547 * 125.98711 * 179.97438 * 21 19 18
23 23 C 1.40360 * 106.70833 * 180.02562 * 22 21 19
24 24 C 1.35131 * 107.11647 * 359.97438 * 23 22 21
25 25 O 1.33934 * 108.76477 * 0.02562 * 24 23 22
26 26 C 1.52997 * 109.47406 * 275.00444 * 10 9 7
27 27 C 1.52998 * 117.50255 * 128.74652 * 26 10 9
28 28 C 1.52998 * 117.49904 * 60.08612 * 26 10 9
29 29 H 0.96995 * 120.00039 * 359.97438 * 1 2 3
30 30 H 0.97006 * 119.99989 * 0.02562 * 9 7 2
31 31 H 1.08999 * 109.46602 * 185.00262 * 12 10 9
32 32 H 1.09001 * 109.47219 * 65.00186 * 12 10 9
33 33 H 0.97006 * 119.99440 * 0.02562 * 13 12 10
34 34 H 1.08997 * 109.47542 * 59.99831 * 16 14 13
35 35 H 1.09001 * 109.46974 * 300.00200 * 16 14 13
36 36 H 1.08997 * 109.47315 * 59.99176 * 17 16 14
37 37 H 1.09001 * 109.46782 * 299.99802 * 17 16 14
38 38 H 0.96998 * 120.00266 * 359.97438 * 18 17 16
39 39 H 1.08005 * 126.64485 * 0.02562 * 22 21 19
40 40 H 1.08003 * 126.44294 * 180.02562 * 23 22 21
41 41 H 1.07997 * 125.61851 * 180.26772 * 24 23 22
42 42 H 1.09007 * 115.55097 * 274.42078 * 26 10 9
43 43 H 1.08997 * 117.49530 * 0.02562 * 27 26 10
44 44 H 1.08996 * 117.49992 * 145.02089 * 27 26 10
45 45 H 1.08998 * 117.49785 * 214.98181 * 28 26 10
46 46 H 1.08995 * 117.49862 * 359.97438 * 28 26 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1039 1.6965 -1.2126
5 1 1.2851 2.7465 0.0006
6 1 3.1039 1.6965 1.2125
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2020 -0.0001
9 7 1.3257 -2.3880 -0.0005
10 6 2.0582 -3.6567 -0.0005
11 1 2.9688 -3.5504 0.5890
12 6 1.1810 -4.7521 0.6090
13 7 0.7343 -4.3355 1.9406
14 6 -0.0556 -5.1473 2.6711
15 8 -0.3962 -6.2229 2.2261
16 6 -0.5155 -4.7185 4.0405
17 6 -1.3927 -5.8139 4.6502
18 7 -1.8403 -5.3968 5.9812
19 6 -2.6303 -6.2086 6.7116
20 8 -2.9721 -7.2879 6.2652
21 6 -3.0779 -5.7912 8.0444
22 6 -3.8763 -6.5126 8.8850
23 6 -4.0491 -5.7370 10.0420
24 6 -3.3569 -4.5909 9.8595
25 8 -2.7733 -4.6273 8.6546
26 6 2.4223 -4.0355 -1.4375
27 6 3.8825 -4.3890 -1.7266
28 6 3.3031 -3.0620 -2.2231
29 1 -0.4850 0.8400 0.0004
30 1 0.3556 -2.3881 -0.0005
31 1 1.7560 -5.6745 0.6908
32 1 0.3135 -4.9201 -0.0292
33 1 1.0064 -3.4750 2.2963
34 1 -1.0902 -3.7960 3.9586
35 1 0.3518 -4.5507 4.6791
36 1 -0.8177 -6.7362 4.7322
37 1 -2.2600 -5.9821 4.0117
38 1 -1.5682 -4.5364 6.3369
39 1 -4.2940 -7.4906 8.6962
40 1 -4.6260 -6.0060 10.9145
41 1 -3.2829 -3.7809 10.5700
42 1 1.6544 -4.5773 -1.9898
43 1 4.5837 -4.3522 -0.8930
44 1 4.0753 -5.1632 -2.4693
45 1 3.1151 -2.9637 -3.2923
46 1 3.6230 -2.1516 -1.7164
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001713884348.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:57:21
Heat of formation + Delta-G solvation = -23.931025 kcal
Electronic energy + Delta-G solvation = -27547.460199 eV
Core-core repulsion = 23439.968737 eV
Total energy + Delta-G solvation = -4107.491461 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-43.01563 -39.88158 -39.27943 -37.60160 -35.49623 -34.66383 -33.43410 -33.42766
-31.69131 -30.89760 -29.87845 -28.02067 -25.06455 -23.67025 -22.84100 -22.15704
-21.91730 -21.70644 -20.74082 -20.20452 -19.52214 -18.80995 -17.47646 -16.91576
-16.72664 -16.58353 -15.97167 -15.72467 -15.55107 -15.15262 -14.83165 -14.47437
-14.33628 -14.06127 -13.69348 -13.44062 -13.35977 -13.25452 -13.16481 -13.03032
-12.80021 -12.15588 -12.01331 -11.55299 -11.40496 -11.18930 -10.91924 -10.89590
-10.75844 -10.60580 -10.43354 -10.20488 -9.98150 -9.78314 -9.51406 -9.43919
-9.33486 -9.03215 -9.01038 -8.68296 -7.10822 -5.87289 -3.17014 0.73221
1.99888 2.31803 2.83549 2.86652 2.91881 3.35124 3.40834 3.41980
3.60435 4.32180 4.37344 4.53317 4.54771 4.57948 4.73068 4.96701
5.03580 5.19108 5.26054 5.38441 5.40178 5.44418 5.48048 5.52043
5.56486 5.70762 5.77040 5.84313 5.86300 5.94232 5.96896 6.03735
6.08318 6.14362 6.36283 6.45273 6.51331 6.56212 6.73274 6.85078
6.94117 7.17064 7.59055 7.80921 7.85493 8.29570 8.49009 9.41785
9.95736 10.31962 11.34358
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.012773 B = 0.002130 C = 0.001871
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2191.551847 B =13142.233108 C =14965.095383
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C -0.009 4.009
3 Si 0.903 3.097
4 H -0.286 1.286
5 H -0.292 1.292
6 H -0.286 1.286
7 C -0.238 4.238
8 H 0.070 0.930
9 N -0.716 5.716
10 C 0.193 3.807
11 H 0.055 0.945
12 C 0.119 3.881
13 N -0.710 5.710
14 C 0.516 3.484
15 O -0.551 6.551
16 C -0.156 4.156
17 C 0.135 3.865
18 N -0.719 5.719
19 C 0.602 3.398
20 O -0.516 6.516
21 C -0.078 4.078
22 C -0.121 4.121
23 C -0.226 4.226
24 C -0.006 4.006
25 O -0.164 6.164
26 C -0.160 4.160
27 C -0.196 4.196
28 C -0.156 4.156
29 H 0.256 0.744
30 H 0.385 0.615
31 H 0.066 0.934
32 H 0.064 0.936
33 H 0.411 0.589
34 H 0.104 0.896
35 H 0.100 0.900
36 H 0.081 0.919
37 H 0.082 0.918
38 H 0.406 0.594
39 H 0.161 0.839
40 H 0.157 0.843
41 H 0.211 0.789
42 H 0.091 0.909
43 H 0.086 0.914
44 H 0.081 0.919
45 H 0.079 0.921
46 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.546 -8.704 16.881 19.163
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.577 5.577
2 C -0.206 4.206
3 Si 0.734 3.266
4 H -0.213 1.213
5 H -0.218 1.218
6 H -0.213 1.213
7 C -0.369 4.369
8 H 0.088 0.912
9 N -0.357 5.357
10 C 0.082 3.918
11 H 0.073 0.927
12 C -0.006 4.006
13 N -0.362 5.362
14 C 0.301 3.699
15 O -0.430 6.430
16 C -0.196 4.196
17 C 0.012 3.988
18 N -0.370 5.370
19 C 0.388 3.612
20 O -0.394 6.394
21 C -0.130 4.130
22 C -0.142 4.142
23 C -0.245 4.245
24 C -0.076 4.076
25 O -0.059 6.059
26 C -0.181 4.181
27 C -0.234 4.234
28 C -0.193 4.193
29 H 0.066 0.934
30 H 0.220 0.780
31 H 0.084 0.916
32 H 0.083 0.917
33 H 0.248 0.752
34 H 0.123 0.877
35 H 0.118 0.882
36 H 0.099 0.901
37 H 0.100 0.900
38 H 0.241 0.759
39 H 0.178 0.822
40 H 0.174 0.826
41 H 0.227 0.773
42 H 0.109 0.891
43 H 0.105 0.895
44 H 0.099 0.901
45 H 0.098 0.902
46 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -2.721 -9.854 16.063 19.040
hybrid contribution 0.261 1.882 0.323 1.927
sum -2.460 -7.972 16.385 18.387
Atomic orbital electron populations
1.69644 1.05046 1.25854 1.57132 1.24721 0.95443 0.97578 1.02820
0.86339 0.78580 0.83787 0.77861 1.21264 1.21764 1.21309 1.19105
0.90787 0.83844 1.43185 0.91201 1.42447 1.05806 0.99387 1.88104
1.20060 0.94330 0.86125 0.91264 0.92698 1.21606 0.98631 0.97524
0.82827 1.45955 1.50465 1.21809 1.17956 1.20159 0.78616 0.84580
0.86579 1.90713 1.56973 1.22721 1.72606 1.21795 1.01710 1.00740
0.95351 1.21130 0.99029 0.97162 0.81495 1.45901 1.50972 1.21679
1.18490 1.16506 0.78738 0.84259 0.81725 1.90917 1.56954 1.21575
1.69931 1.22122 1.06996 0.87398 0.96489 1.22007 0.98191 1.01250
0.92729 1.21885 1.06145 0.95566 1.00929 1.24446 0.96633 1.00693
0.85844 1.84069 1.58799 1.35744 1.27286 1.23034 0.92193 1.03093
0.99826 1.22962 0.97264 0.99821 1.03361 1.22783 1.03395 0.94037
0.99131 0.93401 0.78048 0.91600 0.91740 0.75244 0.87749 0.88207
0.90096 0.89988 0.75911 0.82170 0.82550 0.77260 0.89120 0.89541
0.90068 0.90212 0.87711
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -26.05 13.06 55.49 0.72 -25.32 16
2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16
3 Si 0.90 20.96 29.55 -169.99 -5.02 15.93 16
4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
6 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16
7 C -0.24 -5.85 8.63 -15.06 -0.13 -5.98 16
8 H 0.07 1.68 6.91 -52.49 -0.36 1.32 16
9 N -0.72 -15.70 4.54 -53.43 -0.24 -15.94 16
10 C 0.19 3.42 2.70 -67.93 -0.18 3.24 16
11 H 0.06 0.98 7.84 -51.93 -0.41 0.58 16
12 C 0.12 1.92 5.22 -4.04 -0.02 1.90 16
13 N -0.71 -10.78 5.39 -60.29 -0.32 -11.11 16
14 C 0.52 7.68 7.83 -10.99 -0.09 7.59 16
15 O -0.55 -10.11 15.98 5.55 0.09 -10.02 16
16 C -0.16 -1.67 5.81 -27.89 -0.16 -1.83 16
17 C 0.14 1.60 4.96 -4.05 -0.02 1.58 16
18 N -0.72 -7.47 5.55 -61.63 -0.34 -7.81 16
19 C 0.60 7.48 7.79 -12.86 -0.10 7.38 16
20 O -0.52 -8.18 16.86 5.19 0.09 -8.09 16
21 C -0.08 -0.82 7.13 -36.79 -0.26 -1.08 16
22 C -0.12 -1.13 10.62 -39.39 -0.42 -1.55 16
23 C -0.23 -1.55 10.87 -39.89 -0.43 -1.98 16
24 C -0.01 -0.04 12.08 29.63 0.36 0.32 16
25 O -0.16 -1.44 10.40 5.00 0.05 -1.39 16
26 C -0.16 -2.71 5.36 -90.62 -0.49 -3.19 16
27 C -0.20 -2.91 10.18 -26.70 -0.27 -3.18 16
28 C -0.16 -2.71 9.78 -26.70 -0.26 -2.97 16
29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
30 H 0.39 9.30 7.80 -40.82 -0.32 8.98 16
31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16
32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16
33 H 0.41 6.19 8.14 -40.82 -0.33 5.86 16
34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16
35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16
36 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16
37 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16
38 H 0.41 3.21 8.23 -40.82 -0.34 2.88 16
39 H 0.16 1.40 8.06 -52.48 -0.42 0.97 16
40 H 0.16 0.67 8.06 -52.48 -0.42 0.25 16
41 H 0.21 0.42 8.06 -52.49 -0.42 0.00 16
42 H 0.09 1.52 8.11 -51.93 -0.42 1.09 16
43 H 0.09 1.22 8.05 -51.93 -0.42 0.81 16
44 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16
45 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16
46 H 0.10 2.03 6.23 -51.93 -0.32 1.71 16
LS Contribution 395.95 15.07 5.97 5.97
Total: -1.00 -32.08 395.95 -8.29 -40.37
By element:
Atomic # 1 Polarization: 24.21 SS G_CDS: -6.70 Total: 17.51 kcal
Atomic # 6 Polarization: 2.48 SS G_CDS: -2.57 Total: -0.10 kcal
Atomic # 7 Polarization: -60.00 SS G_CDS: -0.18 Total: -60.18 kcal
Atomic # 8 Polarization: -19.72 SS G_CDS: 0.23 Total: -19.50 kcal
Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -32.08 -8.29 -40.37 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713884348.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.436 kcal
(2) G-P(sol) polarization free energy of solvation -32.080 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.644 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.931 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds