Wall clock time and date at job start Tue Mar 31 2020 18:57:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86799 * 119.99797 * 2 1
4 4 H 1.48505 * 109.47255 * 240.00348 * 3 2 1
5 5 H 1.48506 * 109.47150 * 0.02562 * 3 2 1
6 6 H 1.48499 * 109.47193 * 120.00095 * 3 2 1
7 7 C 1.38809 * 120.00232 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99925 * 180.02562 * 7 2 1
9 9 N 1.36932 * 120.00090 * 359.97438 * 7 2 1
10 10 C 1.46499 * 120.00116 * 180.02562 * 9 7 2
11 11 H 1.08998 * 109.46787 * 35.00599 * 10 9 7
12 12 C 1.53008 * 109.46973 * 155.00432 * 10 9 7
13 13 N 1.46502 * 109.47144 * 304.99895 * 12 10 9
14 14 C 1.34771 * 120.00230 * 179.97438 * 13 12 10
15 15 O 1.21287 * 119.99435 * 0.02562 * 14 13 12
16 16 C 1.50693 * 120.00299 * 180.02562 * 14 13 12
17 17 C 1.53000 * 109.47435 * 180.02562 * 16 14 13
18 18 N 1.46493 * 109.47245 * 180.02562 * 17 16 14
19 19 C 1.34778 * 119.99793 * 179.97438 * 18 17 16
20 20 O 1.21695 * 120.00192 * 359.97438 * 19 18 17
21 21 C 1.46661 * 119.99796 * 179.97438 * 19 18 17
22 22 C 1.36547 * 125.98711 * 179.97438 * 21 19 18
23 23 C 1.40360 * 106.70833 * 180.02562 * 22 21 19
24 24 C 1.35131 * 107.11647 * 359.97438 * 23 22 21
25 25 O 1.33934 * 108.76477 * 0.02562 * 24 23 22
26 26 C 1.52997 * 109.47406 * 275.00444 * 10 9 7
27 27 C 1.52998 * 117.50255 * 128.74652 * 26 10 9
28 28 C 1.52998 * 117.49904 * 60.08612 * 26 10 9
29 29 H 0.96995 * 120.00039 * 359.97438 * 1 2 3
30 30 H 0.97006 * 119.99989 * 0.02562 * 9 7 2
31 31 H 1.08999 * 109.46602 * 185.00262 * 12 10 9
32 32 H 1.09001 * 109.47219 * 65.00186 * 12 10 9
33 33 H 0.97006 * 119.99440 * 0.02562 * 13 12 10
34 34 H 1.08997 * 109.47542 * 59.99831 * 16 14 13
35 35 H 1.09001 * 109.46974 * 300.00200 * 16 14 13
36 36 H 1.08997 * 109.47315 * 59.99176 * 17 16 14
37 37 H 1.09001 * 109.46782 * 299.99802 * 17 16 14
38 38 H 0.96998 * 120.00266 * 359.97438 * 18 17 16
39 39 H 1.08005 * 126.64485 * 0.02562 * 22 21 19
40 40 H 1.08003 * 126.44294 * 180.02562 * 23 22 21
41 41 H 1.07997 * 125.61851 * 180.26772 * 24 23 22
42 42 H 1.09007 * 115.55097 * 274.42078 * 26 10 9
43 43 H 1.08997 * 117.49530 * 0.02562 * 27 26 10
44 44 H 1.08996 * 117.49992 * 145.02089 * 27 26 10
45 45 H 1.08998 * 117.49785 * 214.98181 * 28 26 10
46 46 H 1.08995 * 117.49862 * 359.97438 * 28 26 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1039 1.6965 -1.2126
5 1 1.2851 2.7465 0.0006
6 1 3.1039 1.6965 1.2125
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2020 -0.0001
9 7 1.3257 -2.3880 -0.0005
10 6 2.0582 -3.6567 -0.0005
11 1 2.9688 -3.5504 0.5890
12 6 1.1810 -4.7521 0.6090
13 7 0.7343 -4.3355 1.9406
14 6 -0.0556 -5.1473 2.6711
15 8 -0.3962 -6.2229 2.2261
16 6 -0.5155 -4.7185 4.0405
17 6 -1.3927 -5.8139 4.6502
18 7 -1.8403 -5.3968 5.9812
19 6 -2.6303 -6.2086 6.7116
20 8 -2.9721 -7.2879 6.2652
21 6 -3.0779 -5.7912 8.0444
22 6 -3.8763 -6.5126 8.8850
23 6 -4.0491 -5.7370 10.0420
24 6 -3.3569 -4.5909 9.8595
25 8 -2.7733 -4.6273 8.6546
26 6 2.4223 -4.0355 -1.4375
27 6 3.8825 -4.3890 -1.7266
28 6 3.3031 -3.0620 -2.2231
29 1 -0.4850 0.8400 0.0004
30 1 0.3556 -2.3881 -0.0005
31 1 1.7560 -5.6745 0.6908
32 1 0.3135 -4.9201 -0.0292
33 1 1.0064 -3.4750 2.2963
34 1 -1.0902 -3.7960 3.9586
35 1 0.3518 -4.5507 4.6791
36 1 -0.8177 -6.7362 4.7322
37 1 -2.2600 -5.9821 4.0117
38 1 -1.5682 -4.5364 6.3369
39 1 -4.2940 -7.4906 8.6962
40 1 -4.6260 -6.0060 10.9145
41 1 -3.2829 -3.7809 10.5700
42 1 1.6544 -4.5773 -1.9898
43 1 4.5837 -4.3522 -0.8930
44 1 4.0753 -5.1632 -2.4693
45 1 3.1151 -2.9637 -3.2923
46 1 3.6230 -2.1516 -1.7164
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001713884348.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:57:20
Heat of formation + Delta-G solvation = -47.172687 kcal
Electronic energy + Delta-G solvation = -27548.468033 eV
Core-core repulsion = 23439.968737 eV
Total energy + Delta-G solvation = -4108.499295 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-43.63948 -40.98895 -40.40476 -39.01368 -36.51581 -36.03508 -35.12259 -34.05742
-32.92932 -32.29330 -30.70045 -29.50799 -26.20495 -25.26169 -23.96275 -23.16528
-23.00030 -22.65292 -21.68960 -21.39824 -20.81296 -19.64871 -19.18593 -18.12167
-17.48069 -17.30095 -17.03389 -16.93709 -16.70889 -16.61780 -16.00714 -15.94774
-15.45251 -15.25990 -15.07277 -14.85283 -14.53892 -14.24127 -14.04106 -13.92720
-13.62177 -13.55167 -13.01666 -12.94111 -12.86742 -12.63815 -12.51702 -12.40971
-12.23572 -12.01085 -11.71182 -11.62878 -11.09300 -11.05349 -10.98059 -10.81723
-10.72766 -10.39969 -9.98956 -9.65323 -8.97539 -7.86408 -5.13761 0.00546
1.42659 1.51648 1.53334 1.57115 1.58222 1.66141 2.01240 2.05286
2.49426 2.60348 3.08975 3.50097 3.57165 3.77853 3.81804 3.95008
3.96993 4.01543 4.04772 4.12908 4.19295 4.37766 4.41297 4.48754
4.60371 4.61664 4.69642 4.80528 4.84029 4.89936 4.91112 4.92127
4.96213 5.16417 5.16972 5.18862 5.39609 5.41130 5.48679 5.55938
5.63862 5.81935 6.33097 6.35556 6.62159 6.92940 7.27370 7.41784
8.12672 8.38429 9.35995
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.012773 B = 0.002130 C = 0.001871
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2191.551847 B =13142.233108 C =14965.095383
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.966 5.966
2 C -0.069 4.069
3 Si 0.958 3.042
4 H -0.286 1.286
5 H -0.304 1.304
6 H -0.277 1.277
7 C -0.217 4.217
8 H 0.077 0.923
9 N -0.722 5.722
10 C 0.198 3.802
11 H 0.060 0.940
12 C 0.127 3.873
13 N -0.708 5.708
14 C 0.513 3.487
15 O -0.589 6.589
16 C -0.141 4.141
17 C 0.143 3.857
18 N -0.705 5.705
19 C 0.599 3.401
20 O -0.563 6.563
21 C -0.110 4.110
22 C -0.126 4.126
23 C -0.235 4.235
24 C 0.013 3.987
25 O -0.169 6.169
26 C -0.175 4.175
27 C -0.162 4.162
28 C -0.175 4.175
29 H 0.247 0.753
30 H 0.373 0.627
31 H 0.078 0.922
32 H 0.048 0.952
33 H 0.414 0.586
34 H 0.120 0.880
35 H 0.133 0.867
36 H 0.066 0.934
37 H 0.058 0.942
38 H 0.420 0.580
39 H 0.157 0.843
40 H 0.183 0.817
41 H 0.256 0.744
42 H 0.091 0.909
43 H 0.097 0.903
44 H 0.105 0.895
45 H 0.084 0.916
46 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.145 -8.195 18.796 20.537
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.617 5.617
2 C -0.262 4.262
3 Si 0.789 3.211
4 H -0.212 1.212
5 H -0.231 1.231
6 H -0.203 1.203
7 C -0.349 4.349
8 H 0.094 0.906
9 N -0.361 5.361
10 C 0.089 3.911
11 H 0.078 0.922
12 C 0.002 3.998
13 N -0.359 5.359
14 C 0.300 3.700
15 O -0.470 6.470
16 C -0.181 4.181
17 C 0.019 3.981
18 N -0.356 5.356
19 C 0.387 3.613
20 O -0.444 6.444
21 C -0.162 4.162
22 C -0.147 4.147
23 C -0.254 4.254
24 C -0.056 4.056
25 O -0.065 6.065
26 C -0.196 4.196
27 C -0.200 4.200
28 C -0.212 4.212
29 H 0.056 0.944
30 H 0.205 0.795
31 H 0.096 0.904
32 H 0.067 0.933
33 H 0.250 0.750
34 H 0.138 0.862
35 H 0.151 0.849
36 H 0.085 0.915
37 H 0.076 0.924
38 H 0.258 0.742
39 H 0.175 0.825
40 H 0.201 0.799
41 H 0.272 0.728
42 H 0.110 0.890
43 H 0.116 0.884
44 H 0.123 0.877
45 H 0.102 0.898
46 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -1.251 -9.336 17.990 20.307
hybrid contribution -0.152 1.659 -0.212 1.679
sum -1.403 -7.677 17.778 19.415
Atomic orbital electron populations
1.69789 1.06330 1.25635 1.59939 1.25340 0.96044 1.00320 1.04484
0.85438 0.77223 0.80426 0.77989 1.21244 1.23091 1.20283 1.19396
0.91096 0.84565 1.39836 0.90556 1.42547 1.05285 1.00295 1.88017
1.20149 0.94174 0.84745 0.92077 0.92188 1.21452 0.97833 0.97390
0.83104 1.45939 1.50525 1.21900 1.17577 1.20798 0.77687 0.83813
0.87699 1.90701 1.58212 1.24405 1.73717 1.21728 1.02793 1.00421
0.93121 1.20899 0.98078 0.97246 0.81922 1.45725 1.50272 1.21998
1.17651 1.16798 0.78294 0.83762 0.82487 1.90879 1.58793 1.23500
1.71261 1.21724 1.09212 0.88911 0.96319 1.22277 0.97428 1.01350
0.93642 1.22228 1.06838 0.95425 1.00910 1.25415 0.94105 1.01249
0.84860 1.84059 1.59204 1.34871 1.28321 1.22955 0.93915 1.03829
0.98906 1.23032 0.95211 0.98239 1.03504 1.22738 1.04886 0.94352
0.99259 0.94407 0.79495 0.90352 0.93340 0.74956 0.86161 0.84913
0.91546 0.92372 0.74225 0.82525 0.79929 0.72832 0.89037 0.88429
0.87697 0.89763 0.89967
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -54.96 13.06 21.65 0.28 -54.67 16
2 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16
3 Si 0.96 43.14 29.55 68.60 2.03 45.17 16
4 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16
5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16
6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16
7 C -0.22 -10.54 8.63 84.03 0.73 -9.81 16
8 H 0.08 3.58 6.91 -2.91 -0.02 3.56 16
9 N -0.72 -31.43 4.54 -322.94 -1.47 -32.90 16
10 C 0.20 6.79 2.70 44.99 0.12 6.91 16
11 H 0.06 2.03 7.84 -2.39 -0.02 2.01 16
12 C 0.13 4.03 5.22 86.38 0.45 4.48 16
13 N -0.71 -20.95 5.39 -463.05 -2.49 -23.45 16
14 C 0.51 15.06 7.83 87.66 0.69 15.74 16
15 O -0.59 -21.90 15.98 -3.05 -0.05 -21.95 16
16 C -0.14 -2.85 5.81 29.85 0.17 -2.67 16
17 C 0.14 3.44 4.96 86.38 0.43 3.87 16
18 N -0.71 -14.55 5.55 -467.11 -2.59 -17.14 16
19 C 0.60 15.37 7.79 86.44 0.67 16.05 16
20 O -0.56 -18.94 16.86 -4.33 -0.07 -19.01 16
21 C -0.11 -2.29 7.13 24.08 0.17 -2.12 16
22 C -0.13 -2.31 10.62 22.39 0.24 -2.07 16
23 C -0.24 -2.66 10.87 22.07 0.24 -2.42 16
24 C 0.01 0.12 12.08 67.10 0.81 0.93 16
25 O -0.17 -2.66 10.40 -5.01 -0.05 -2.71 16
26 C -0.17 -5.67 5.36 -10.80 -0.06 -5.73 16
27 C -0.16 -4.33 10.18 30.62 0.31 -4.02 16
28 C -0.17 -5.84 9.78 30.62 0.30 -5.54 16
29 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16
30 H 0.37 18.17 7.80 -92.70 -0.72 17.45 16
31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16
32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16
33 H 0.41 11.97 8.14 -92.70 -0.75 11.22 16
34 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16
35 H 0.13 1.86 8.14 -2.39 -0.02 1.85 16
36 H 0.07 1.81 8.10 -2.39 -0.02 1.79 16
37 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16
38 H 0.42 6.13 8.23 -92.71 -0.76 5.36 16
39 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16
40 H 0.18 0.99 8.06 -2.91 -0.02 0.96 16
41 H 0.26 -0.25 8.06 -2.91 -0.02 -0.28 16
42 H 0.09 2.96 8.11 -2.38 -0.02 2.94 16
43 H 0.10 2.42 8.05 -2.39 -0.02 2.40 16
44 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16
45 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16
46 H 0.08 3.12 6.23 -2.39 -0.01 3.10 16
Total: -1.00 -71.83 395.95 0.11 -71.72
By element:
Atomic # 1 Polarization: 45.74 SS G_CDS: -1.21 Total: 44.53 kcal
Atomic # 6 Polarization: 4.68 SS G_CDS: 5.74 Total: 10.42 kcal
Atomic # 7 Polarization: -121.89 SS G_CDS: -6.27 Total: -128.16 kcal
Atomic # 8 Polarization: -43.50 SS G_CDS: -0.17 Total: -43.68 kcal
Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal
Total: -71.83 0.11 -71.72 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713884348.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.545 kcal
(2) G-P(sol) polarization free energy of solvation -71.830 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.285 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.718 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.173 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds