Wall clock time and date at job start Tue Mar 31 2020 18:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48503 * 109.46819 * 239.99811 * 3 2 1 5 5 H 1.48503 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47620 * 119.99958 * 3 2 1 7 7 C 1.38942 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00356 * 180.27782 * 7 2 1 9 9 N 1.37105 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00137 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.46895 * 111.00306 * 180.02562 * 13 12 10 15 15 H 1.09003 * 112.85064 * 336.19795 * 14 13 12 16 16 C 1.53788 * 113.61658 * 107.50199 * 14 13 12 17 17 C 1.53780 * 87.08007 * 139.98032 * 16 14 13 18 18 H 1.08998 * 113.68950 * 220.00305 * 17 16 14 19 19 N 1.46505 * 113.61107 * 89.12146 * 17 16 14 20 20 C 1.34775 * 120.00258 * 107.49902 * 19 17 16 21 21 O 1.21279 * 119.99788 * 0.02562 * 20 19 17 22 22 C 1.50694 * 120.00002 * 179.97438 * 20 19 17 23 23 C 1.52998 * 109.47340 * 180.02562 * 22 20 19 24 24 C 1.50700 * 109.47145 * 180.02562 * 23 22 20 25 25 C 1.41383 * 126.58065 * 90.00362 * 24 23 22 26 26 C 1.34509 * 106.84230 * 179.97438 * 25 24 23 27 27 O 1.34305 * 108.41905 * 359.97438 * 26 25 24 28 28 C 1.34305 * 109.47878 * 359.76914 * 27 26 25 29 29 C 1.53777 * 87.08334 * 334.56979 * 17 16 14 30 30 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99984 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46978 * 300.00347 * 12 10 9 33 33 H 1.08996 * 109.47197 * 59.99985 * 12 10 9 34 34 H 1.00907 * 110.99811 * 303.95742 * 13 12 10 35 35 H 1.08997 * 113.61079 * 254.53301 * 16 14 13 36 36 H 1.09000 * 113.61070 * 25.43344 * 16 14 13 37 37 H 0.97002 * 119.99635 * 287.49437 * 19 17 16 38 38 H 1.08999 * 109.47433 * 300.00177 * 22 20 19 39 39 H 1.09000 * 109.46759 * 60.00200 * 22 20 19 40 40 H 1.08999 * 109.46848 * 300.00347 * 23 22 20 41 41 H 1.08999 * 109.46782 * 59.99926 * 23 22 20 42 42 H 1.08002 * 126.57880 * 359.92178 * 25 24 23 43 43 H 1.07994 * 125.79482 * 180.02562 * 26 25 24 44 44 H 1.08002 * 125.79210 * 180.23601 * 28 27 26 45 45 H 1.09002 * 113.61484 * 270.88290 * 29 17 16 46 46 H 1.08997 * 113.69328 * 139.99565 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0051 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1982 -5.9795 0.0027 14 6 1.4980 -7.2708 0.0026 15 1 0.4882 -7.2047 0.4077 16 6 1.5773 -8.0146 -1.3411 17 6 1.7626 -9.3053 -0.5260 18 1 2.4955 -9.9907 -0.9517 19 7 0.5020 -9.9653 -0.1773 20 6 0.1476 -11.1102 -0.7938 21 8 0.8726 -11.5944 -1.6369 22 6 -1.1488 -11.7893 -0.4346 23 6 -1.3087 -13.0591 -1.2730 24 6 -2.6055 -13.7379 -0.9143 25 6 -3.8656 -13.5197 -1.5171 26 6 -4.7409 -14.3295 -0.8947 27 8 -4.0813 -15.0231 0.0475 28 6 -2.7849 -14.6724 0.0365 29 6 2.3267 -8.4210 0.5986 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0016 32 1 0.6174 -4.9204 0.8924 33 1 0.6167 -4.9209 -0.8875 34 1 2.8332 -5.9127 -0.7787 35 1 0.6483 -7.9874 -1.9106 36 1 2.4489 -7.7461 -1.9379 37 1 -0.0776 -9.5782 0.4974 38 1 -1.1408 -12.0515 0.6233 39 1 -1.9804 -11.1139 -0.6353 40 1 -1.3166 -12.7973 -2.3310 41 1 -0.4770 -13.7343 -1.0719 42 1 -4.0838 -12.8337 -2.3222 43 1 -5.7950 -14.4091 -1.1156 44 1 -2.0172 -15.0708 0.6833 45 1 3.4032 -8.2636 0.5320 46 1 2.0037 -8.7210 1.5954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713945216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:32 Heat of formation + Delta-G solvation = -42.119584 kcal Electronic energy + Delta-G solvation = -26847.274056 eV Core-core repulsion = 22738.993880 eV Total energy + Delta-G solvation = -4108.280176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.94368 -40.49420 -38.88243 -37.99456 -35.24622 -34.58561 -33.83718 -32.57489 -31.66687 -31.19196 -29.55781 -26.95491 -25.80193 -25.39508 -24.23448 -22.78024 -22.00140 -21.12053 -20.41972 -19.76248 -19.11216 -18.01741 -17.88754 -17.18772 -16.42863 -16.21129 -16.06393 -15.93726 -15.37306 -15.09908 -14.83241 -14.58542 -14.36216 -14.14891 -13.92801 -13.72294 -13.20937 -13.11075 -12.89217 -12.82366 -12.68313 -12.48918 -12.37972 -12.15908 -11.80434 -11.59840 -11.43244 -11.33945 -11.04920 -10.83973 -10.49229 -10.44425 -10.25113 -10.21673 -9.95533 -9.50993 -9.27905 -8.94866 -8.46119 -8.03432 -7.96179 -6.42641 -3.83572 1.36008 2.15382 2.35737 2.74314 2.90487 3.19646 3.25308 3.29830 3.89786 4.09202 4.26705 4.30951 4.38051 4.41973 4.50441 4.57017 4.66825 4.79233 4.81421 4.87744 4.93840 5.15681 5.17561 5.26043 5.27719 5.35613 5.46825 5.63896 5.64123 5.70853 5.72851 5.76312 5.78651 5.83422 5.85499 5.96463 6.00615 6.10593 6.24554 6.39067 6.71012 7.21478 7.24648 7.54129 7.64474 7.95660 8.05218 8.60238 9.16840 9.53187 10.04695 10.74990 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.001511 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.148244 B =18523.358648 C =19531.938843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.657 5.657 14 C 0.068 3.932 15 H 0.093 0.907 16 C -0.180 4.180 17 C 0.118 3.882 18 H 0.103 0.897 19 N -0.713 5.713 20 C 0.514 3.486 21 O -0.540 6.540 22 C -0.135 4.135 23 C -0.034 4.034 24 C -0.179 4.179 25 C -0.209 4.209 26 C -0.042 4.042 27 O -0.179 6.179 28 C -0.040 4.040 29 C -0.132 4.132 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.353 0.647 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.401 0.599 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.148 0.852 43 H 0.202 0.798 44 H 0.201 0.799 45 H 0.101 0.899 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 -27.981 0.033 29.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.288 5.288 14 C -0.043 4.043 15 H 0.111 0.889 16 C -0.221 4.221 17 C 0.012 3.988 18 H 0.121 0.879 19 N -0.364 5.364 20 C 0.301 3.699 21 O -0.417 6.417 22 C -0.175 4.175 23 C -0.072 4.072 24 C -0.180 4.180 25 C -0.228 4.228 26 C -0.110 4.110 27 O -0.074 6.074 28 C -0.108 4.108 29 C -0.171 4.171 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.173 0.827 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.236 0.764 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.166 0.834 43 H 0.218 0.782 44 H 0.218 0.782 45 H 0.119 0.881 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.798 -28.329 0.299 29.665 hybrid contribution -0.930 1.329 -0.713 1.772 sum -9.729 -27.000 -0.414 28.702 Atomic orbital electron populations 1.69604 1.05941 1.28265 1.50547 1.25259 0.95637 0.99727 0.97277 0.85911 0.78757 0.80419 0.79088 1.19913 1.20979 1.19872 1.19666 0.93369 0.82267 1.47716 0.87961 1.41861 1.09179 1.04613 1.64349 1.19834 0.88407 0.84755 0.84504 1.90523 1.13772 1.87077 1.55420 1.21709 0.94446 0.91058 1.01039 1.60025 1.18233 0.99492 1.51032 1.23098 0.97276 0.88968 0.94989 0.88887 1.24194 1.02971 0.96835 0.98096 1.21767 0.86251 0.93391 0.97372 0.87888 1.45753 1.22837 1.25214 1.42567 1.20731 0.87813 0.80343 0.81007 1.90714 1.53825 1.64691 1.32479 1.21665 0.95506 0.98078 1.02250 1.19681 0.92628 0.94504 1.00402 1.20487 0.96449 1.01315 0.99755 1.21804 0.92731 1.04095 1.04197 1.24050 0.98694 0.96293 0.91952 1.84078 1.20324 1.54721 1.48312 1.23924 0.83847 1.00497 1.02531 1.23462 1.01808 0.94209 0.97659 0.91825 0.77479 0.89701 0.93866 0.82679 0.91298 0.88822 0.76411 0.88763 0.88654 0.90101 0.90250 0.83424 0.78173 0.78195 0.88092 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 9 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 10 C 0.44 10.32 7.82 -10.99 -0.09 10.23 16 11 O -0.58 -15.82 15.78 5.55 0.09 -15.74 16 12 C 0.05 0.86 6.01 -4.98 -0.03 0.83 16 13 N -0.66 -10.16 6.24 -107.14 -0.67 -10.83 16 14 C 0.07 0.76 4.06 -66.90 -0.27 0.49 16 15 H 0.09 0.94 7.87 -51.93 -0.41 0.53 16 16 C -0.18 -1.89 7.49 -25.92 -0.19 -2.08 16 17 C 0.12 1.14 4.32 -67.12 -0.29 0.85 16 18 H 0.10 1.13 7.46 -51.93 -0.39 0.75 16 19 N -0.71 -5.72 5.26 -53.02 -0.28 -6.00 16 20 C 0.51 4.77 7.83 -10.99 -0.09 4.69 16 21 O -0.54 -7.19 15.58 5.56 0.09 -7.10 16 22 C -0.13 -0.84 5.68 -27.89 -0.16 -1.00 16 23 C -0.03 -0.25 5.02 -27.88 -0.14 -0.39 16 24 C -0.18 -1.27 5.42 -104.74 -0.57 -1.84 16 25 C -0.21 -1.42 10.87 -39.70 -0.43 -1.85 16 26 C -0.04 -0.26 12.09 29.41 0.36 0.10 16 27 O -0.18 -1.34 10.65 5.70 0.06 -1.28 16 28 C -0.04 -0.26 12.01 29.42 0.35 0.09 16 29 C -0.13 -1.29 7.63 -25.92 -0.20 -1.49 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 32 H 0.08 1.34 8.13 -51.93 -0.42 0.91 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.35 5.71 7.89 -39.29 -0.31 5.40 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.01 7.82 -51.93 -0.41 0.60 16 37 H 0.40 2.28 8.70 -40.82 -0.36 1.93 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.08 0.60 8.10 -51.93 -0.42 0.17 16 42 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.20 0.52 8.06 -52.49 -0.42 0.10 16 44 H 0.20 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 394.62 15.07 5.95 5.95 Total: -1.00 -34.64 394.62 -7.88 -42.52 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -6.77 Total: 13.89 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.98 Total: 0.61 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.28 Total: -54.83 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: 0.23 Total: -24.12 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.64 -7.88 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713945216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.399 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds