Wall clock time and date at job start Tue Mar 31 2020 18:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48503 * 109.46819 * 239.99811 * 3 2 1 5 5 H 1.48503 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47620 * 119.99958 * 3 2 1 7 7 C 1.38942 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00356 * 180.27782 * 7 2 1 9 9 N 1.37105 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00137 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.46895 * 111.00306 * 180.02562 * 13 12 10 15 15 H 1.09003 * 112.85064 * 336.19795 * 14 13 12 16 16 C 1.53788 * 113.61658 * 107.50199 * 14 13 12 17 17 C 1.53780 * 87.08007 * 139.98032 * 16 14 13 18 18 H 1.08998 * 113.68950 * 220.00305 * 17 16 14 19 19 N 1.46505 * 113.61107 * 89.12146 * 17 16 14 20 20 C 1.34775 * 120.00258 * 107.49902 * 19 17 16 21 21 O 1.21279 * 119.99788 * 0.02562 * 20 19 17 22 22 C 1.50694 * 120.00002 * 179.97438 * 20 19 17 23 23 C 1.52998 * 109.47340 * 180.02562 * 22 20 19 24 24 C 1.50700 * 109.47145 * 180.02562 * 23 22 20 25 25 C 1.41383 * 126.58065 * 90.00362 * 24 23 22 26 26 C 1.34509 * 106.84230 * 179.97438 * 25 24 23 27 27 O 1.34305 * 108.41905 * 359.97438 * 26 25 24 28 28 C 1.34305 * 109.47878 * 359.76914 * 27 26 25 29 29 C 1.53777 * 87.08334 * 334.56979 * 17 16 14 30 30 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99984 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46978 * 300.00347 * 12 10 9 33 33 H 1.08996 * 109.47197 * 59.99985 * 12 10 9 34 34 H 1.00907 * 110.99811 * 303.95742 * 13 12 10 35 35 H 1.08997 * 113.61079 * 254.53301 * 16 14 13 36 36 H 1.09000 * 113.61070 * 25.43344 * 16 14 13 37 37 H 0.97002 * 119.99635 * 287.49437 * 19 17 16 38 38 H 1.08999 * 109.47433 * 300.00177 * 22 20 19 39 39 H 1.09000 * 109.46759 * 60.00200 * 22 20 19 40 40 H 1.08999 * 109.46848 * 300.00347 * 23 22 20 41 41 H 1.08999 * 109.46782 * 59.99926 * 23 22 20 42 42 H 1.08002 * 126.57880 * 359.92178 * 25 24 23 43 43 H 1.07994 * 125.79482 * 180.02562 * 26 25 24 44 44 H 1.08002 * 125.79210 * 180.23601 * 28 27 26 45 45 H 1.09002 * 113.61484 * 270.88290 * 29 17 16 46 46 H 1.08997 * 113.69328 * 139.99565 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0051 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1982 -5.9795 0.0027 14 6 1.4980 -7.2708 0.0026 15 1 0.4882 -7.2047 0.4077 16 6 1.5773 -8.0146 -1.3411 17 6 1.7626 -9.3053 -0.5260 18 1 2.4955 -9.9907 -0.9517 19 7 0.5020 -9.9653 -0.1773 20 6 0.1476 -11.1102 -0.7938 21 8 0.8726 -11.5944 -1.6369 22 6 -1.1488 -11.7893 -0.4346 23 6 -1.3087 -13.0591 -1.2730 24 6 -2.6055 -13.7379 -0.9143 25 6 -3.8656 -13.5197 -1.5171 26 6 -4.7409 -14.3295 -0.8947 27 8 -4.0813 -15.0231 0.0475 28 6 -2.7849 -14.6724 0.0365 29 6 2.3267 -8.4210 0.5986 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0016 32 1 0.6174 -4.9204 0.8924 33 1 0.6167 -4.9209 -0.8875 34 1 2.8332 -5.9127 -0.7787 35 1 0.6483 -7.9874 -1.9106 36 1 2.4489 -7.7461 -1.9379 37 1 -0.0776 -9.5782 0.4974 38 1 -1.1408 -12.0515 0.6233 39 1 -1.9804 -11.1139 -0.6353 40 1 -1.3166 -12.7973 -2.3310 41 1 -0.4770 -13.7343 -1.0719 42 1 -4.0838 -12.8337 -2.3222 43 1 -5.7950 -14.4091 -1.1156 44 1 -2.0172 -15.0708 0.6833 45 1 3.4032 -8.2636 0.5320 46 1 2.0037 -8.7210 1.5954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713945216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:32 Heat of formation + Delta-G solvation = -68.094775 kcal Electronic energy + Delta-G solvation = -26848.400425 eV Core-core repulsion = 22738.993880 eV Total energy + Delta-G solvation = -4109.406545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.41238 -41.31045 -40.18673 -39.41588 -36.14088 -35.78273 -35.36869 -33.58898 -33.18874 -32.21271 -30.04614 -28.45132 -26.63604 -26.42513 -25.61621 -23.78447 -22.44979 -21.81363 -21.16101 -20.93455 -20.41000 -19.87189 -18.56643 -17.91812 -17.66875 -17.04709 -16.88572 -16.73834 -16.60160 -16.34819 -16.08199 -15.66406 -15.54231 -15.45762 -14.88109 -14.76685 -14.28457 -14.24433 -13.64649 -13.57722 -13.49397 -13.47157 -13.34821 -13.15576 -13.05399 -12.94804 -12.81822 -12.56147 -12.42764 -12.12173 -11.87055 -11.74526 -11.50227 -11.35900 -10.97294 -10.52191 -10.32929 -10.05337 -10.01399 -9.40414 -9.23069 -8.46531 -5.95382 0.90838 1.40143 1.42163 1.52964 1.63968 1.66625 2.05817 2.20690 2.29605 2.37461 2.95781 3.20783 3.45150 3.62183 3.69506 3.76034 3.93604 3.98684 4.02734 4.08185 4.21678 4.30920 4.33139 4.41878 4.51611 4.58080 4.61746 4.70384 4.81408 4.83275 4.86239 4.90409 4.99180 5.05250 5.13831 5.16082 5.25128 5.37448 5.40843 5.58285 5.63941 5.93811 6.17129 6.24980 6.40450 6.57872 6.60550 7.12729 7.28237 7.56579 8.12077 8.70495 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.001511 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.148244 B =18523.358648 C =19531.938843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.625 6.625 12 C 0.065 3.935 13 N -0.671 5.671 14 C 0.068 3.932 15 H 0.113 0.887 16 C -0.177 4.177 17 C 0.126 3.874 18 H 0.088 0.912 19 N -0.701 5.701 20 C 0.513 3.487 21 O -0.586 6.586 22 C -0.124 4.124 23 C -0.029 4.029 24 C -0.192 4.192 25 C -0.229 4.229 26 C -0.043 4.043 27 O -0.193 6.193 28 C -0.045 4.045 29 C -0.123 4.123 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.345 0.655 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.416 0.584 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.155 0.845 43 H 0.230 0.770 44 H 0.225 0.775 45 H 0.091 0.909 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.587 -28.446 0.973 30.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.067 4.067 13 N -0.302 5.302 14 C -0.042 4.042 15 H 0.131 0.869 16 C -0.218 4.218 17 C 0.019 3.981 18 H 0.106 0.894 19 N -0.353 5.353 20 C 0.301 3.699 21 O -0.466 6.466 22 C -0.164 4.164 23 C -0.067 4.067 24 C -0.194 4.194 25 C -0.248 4.248 26 C -0.110 4.110 27 O -0.089 6.089 28 C -0.112 4.112 29 C -0.162 4.162 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.125 0.875 33 H 0.083 0.917 34 H 0.165 0.835 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.254 0.746 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.172 0.828 43 H 0.247 0.753 44 H 0.241 0.759 45 H 0.110 0.890 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.461 -28.801 1.265 30.668 hybrid contribution -0.424 1.407 -1.024 1.792 sum -10.885 -27.393 0.241 29.478 Atomic orbital electron populations 1.69662 1.06789 1.29363 1.50217 1.26023 0.96549 1.02367 0.96219 0.84996 0.77774 0.76683 0.78926 1.19767 1.19445 1.19735 1.19643 0.92730 0.84132 1.50116 0.90372 1.41931 1.09330 1.04708 1.65032 1.20969 0.88293 0.86286 0.82153 1.90491 1.15959 1.88005 1.56703 1.21582 0.94091 0.88013 1.03006 1.60062 1.18500 1.00615 1.51018 1.23261 0.98138 0.87073 0.95729 0.86905 1.24140 1.02700 0.97101 0.97828 1.21565 0.86726 0.92752 0.97047 0.89415 1.45657 1.22349 1.24766 1.42527 1.21272 0.88275 0.80212 0.80125 1.90701 1.55412 1.65912 1.34567 1.21644 0.93973 0.97468 1.03289 1.19568 0.92639 0.94947 0.99575 1.20546 0.96400 1.01981 1.00424 1.22039 0.92970 1.04909 1.04859 1.24646 0.99862 0.95402 0.91094 1.84087 1.20819 1.55126 1.48819 1.24403 0.84007 1.00120 1.02640 1.23373 1.01158 0.93237 0.98435 0.91282 0.76938 0.87509 0.91720 0.83522 0.91299 0.89534 0.74639 0.86404 0.87195 0.91857 0.90927 0.82771 0.75345 0.75906 0.89015 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.23 13.05 21.66 0.28 -48.95 16 2 C -0.01 -0.62 5.50 84.92 0.47 -0.16 16 3 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.34 -19.11 9.68 84.04 0.81 -18.29 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.57 -29.17 5.29 -306.99 -1.62 -30.79 16 10 C 0.44 20.49 7.82 87.66 0.69 21.18 16 11 O -0.62 -34.58 15.78 -3.07 -0.05 -34.62 16 12 C 0.07 2.14 6.01 85.56 0.51 2.65 16 13 N -0.67 -19.93 6.24 -492.87 -3.08 -23.00 16 14 C 0.07 1.38 4.06 45.44 0.18 1.57 16 15 H 0.11 1.88 7.87 -2.39 -0.02 1.86 16 16 C -0.18 -3.49 7.49 31.12 0.23 -3.26 16 17 C 0.13 2.26 4.32 45.51 0.20 2.45 16 18 H 0.09 1.91 7.46 -2.39 -0.02 1.90 16 19 N -0.70 -9.80 5.26 -440.05 -2.32 -12.11 16 20 C 0.51 8.86 7.83 87.66 0.69 9.55 16 21 O -0.59 -15.60 15.58 -3.03 -0.05 -15.64 16 22 C -0.12 -1.31 5.68 29.85 0.17 -1.14 16 23 C -0.03 -0.40 5.02 29.85 0.15 -0.25 16 24 C -0.19 -2.52 5.42 -19.94 -0.11 -2.63 16 25 C -0.23 -2.85 10.87 22.19 0.24 -2.61 16 26 C -0.04 -0.45 12.09 66.97 0.81 0.36 16 27 O -0.19 -2.60 10.65 -2.52 -0.03 -2.62 16 28 C -0.04 -0.51 12.01 66.97 0.80 0.29 16 29 C -0.12 -2.18 7.63 31.12 0.24 -1.95 16 30 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 31 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 32 H 0.11 3.07 8.13 -2.39 -0.02 3.05 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.35 11.10 7.89 -89.69 -0.71 10.39 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 1.84 7.82 -2.39 -0.02 1.82 16 37 H 0.42 3.40 8.70 -92.71 -0.81 2.59 16 38 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.11 0.88 8.14 -2.39 -0.02 0.87 16 40 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 41 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 42 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.23 0.70 8.06 -2.91 -0.02 0.67 16 44 H 0.22 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -76.08 394.62 0.04 -76.04 By element: Atomic # 1 Polarization: 40.37 SS G_CDS: -1.22 Total: 39.15 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 6.08 Total: 7.77 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -6.73 Total: -114.86 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.12 Total: -52.89 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -76.08 0.04 -76.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713945216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.948 kcal (2) G-P(sol) polarization free energy of solvation -76.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds