Wall clock time and date at job start Tue Mar 31 2020 18:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86791 * 120.00270 * 2 1 4 4 H 1.48499 * 109.47345 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47412 * 300.00101 * 3 2 1 6 6 H 1.48507 * 109.47213 * 60.00212 * 3 2 1 7 7 C 1.38814 * 119.99444 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99357 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00306 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99865 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46934 * 175.20900 * 10 9 7 12 12 H 1.09001 * 109.70276 * 48.04973 * 11 10 9 13 13 C 1.53617 * 109.66461 * 168.64271 * 11 10 9 14 14 C 1.53046 * 109.24375 * 174.55008 * 13 11 10 15 15 C 1.53044 * 109.53532 * 298.51127 * 14 13 11 16 16 C 1.53189 * 109.31182 * 61.36579 * 15 14 13 17 17 N 1.46924 * 108.77892 * 305.36149 * 16 15 14 18 18 C 1.34773 * 120.63675 * 233.59060 * 17 16 15 19 19 O 1.21498 * 120.00684 * 184.27127 * 18 17 16 20 20 C 1.48333 * 119.99608 * 3.99875 * 18 17 16 21 21 N 1.31597 * 127.15752 * 354.29397 * 20 18 17 22 22 O 1.21564 * 111.54900 * 179.82877 * 21 20 18 23 23 C 1.32811 * 111.51603 * 0.40988 * 22 21 20 24 24 C 1.35711 * 106.70246 * 359.80159 * 23 22 21 25 25 C 1.50035 * 123.86308 * 179.80964 * 24 23 22 26 26 O 1.43632 * 107.82050 * 345.23580 * 25 24 23 27 27 C 1.42996 * 114.36743 * 50.05629 * 26 25 24 28 28 C 1.50671 * 130.83271 * 179.79729 * 23 22 21 29 29 H 0.96996 * 119.99077 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00039 * 359.97438 * 9 7 2 31 31 H 1.08992 * 109.47108 * 55.20916 * 10 9 7 32 32 H 1.08996 * 109.47119 * 295.20669 * 10 9 7 33 33 H 1.09007 * 109.63368 * 54.55761 * 13 11 10 34 34 H 1.09004 * 109.45993 * 294.43407 * 13 11 10 35 35 H 1.09003 * 109.45902 * 178.49176 * 14 13 11 36 36 H 1.09000 * 109.44707 * 58.52440 * 14 13 11 37 37 H 1.09001 * 109.49778 * 301.40978 * 15 14 13 38 38 H 1.08998 * 109.49423 * 181.31616 * 15 14 13 39 39 H 1.09006 * 109.58369 * 185.57750 * 16 15 14 40 40 H 1.08995 * 109.59140 * 65.15132 * 16 15 14 41 41 H 1.09006 * 109.79075 * 104.86674 * 25 24 23 42 42 H 1.09004 * 109.78957 * 225.69759 * 25 24 23 43 43 H 1.09004 * 109.39897 * 169.44164 * 27 26 25 44 44 H 1.08991 * 109.40165 * 49.70333 * 27 26 25 45 45 H 1.08993 * 109.82468 * 283.65461 * 28 23 22 46 46 H 1.09005 * 109.81846 * 44.57562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0027 11 6 1.0681 -4.8174 0.1167 12 1 0.2544 -4.6811 -0.5957 13 6 1.7895 -6.1435 -0.1671 14 6 0.8269 -7.3059 0.0872 15 6 0.3924 -7.2988 1.5547 16 6 -0.3404 -5.9886 1.8597 17 7 0.5253 -4.8633 1.4814 18 6 0.8117 -3.8890 2.3674 19 8 1.4645 -2.9248 2.0203 20 6 0.3249 -3.9909 3.7648 21 7 -0.4773 -4.9080 4.2622 22 8 -0.6901 -4.7213 5.4444 23 6 -0.0580 -3.6410 5.8885 24 6 0.6196 -3.1239 4.8325 25 6 1.4661 -1.8874 4.9069 26 8 1.1426 -1.2060 6.1292 27 6 1.1646 -2.0379 7.2920 28 6 -0.0208 -3.0148 7.2585 29 1 -0.4848 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0016 31 1 2.7474 -3.6791 0.8411 32 1 2.6187 -3.7519 -0.9326 33 1 2.6548 -6.2375 0.4891 34 1 2.1173 -6.1634 -1.2065 35 1 1.3270 -8.2477 -0.1389 36 1 -0.0496 -7.1976 -0.5516 37 1 1.2708 -7.3819 2.1946 38 1 -0.2747 -8.1405 1.7406 39 1 -0.5647 -5.9349 2.9251 40 1 -1.2665 -5.9458 1.2866 41 1 2.5211 -2.1616 4.9044 42 1 1.2503 -1.2407 4.0563 43 1 1.0953 -1.4152 8.1840 44 1 2.0974 -2.6011 7.3167 45 1 -0.9497 -2.4756 7.4438 46 1 0.1159 -3.7880 8.0146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714142694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:45 Heat of formation + Delta-G solvation = 53.296789 kcal Electronic energy + Delta-G solvation = -31103.623254 eV Core-core repulsion = 26999.480643 eV Total energy + Delta-G solvation = -4104.142612 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.98962 -40.01990 -38.86319 -36.94113 -34.85528 -33.65313 -33.27756 -32.46664 -31.85421 -30.50536 -29.75881 -26.69205 -26.08365 -24.58635 -24.10894 -23.83577 -22.64584 -21.26159 -20.88027 -20.28473 -18.88294 -17.80091 -17.42823 -16.95477 -16.44901 -16.01258 -15.64018 -15.33565 -15.00103 -14.84197 -14.46257 -14.27438 -13.95970 -13.69807 -13.61803 -13.53276 -13.26270 -12.91721 -12.88757 -12.72153 -12.27560 -12.17015 -11.83585 -11.70011 -11.47216 -11.19019 -10.95011 -10.86954 -10.72682 -10.70539 -10.31795 -10.21213 -10.07637 -9.85776 -9.83968 -9.51994 -9.10458 -8.69711 -8.67847 -8.07189 -6.51144 -5.54032 -2.73812 1.23285 1.79431 2.78199 3.23530 3.55362 3.60994 3.63275 3.67566 3.73343 4.15200 4.38586 4.66153 4.75502 4.76956 4.83430 4.91637 4.96780 5.02847 5.07248 5.19207 5.25279 5.32128 5.41756 5.49142 5.53552 5.65772 5.66756 5.72486 5.79807 5.81011 5.89946 5.97454 6.04305 6.09491 6.13103 6.22241 6.29648 6.37680 6.51202 6.68523 6.88948 7.02313 7.21701 7.82706 7.89150 8.12021 8.62851 8.78176 9.74728 10.32408 10.67428 11.69840 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007820 B = 0.006378 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3579.812867 B = 4388.848414 C = 7441.882164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.022 4.022 3 Si 0.899 3.101 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.200 4.200 8 H 0.065 0.935 9 N -0.693 5.693 10 C 0.159 3.841 11 C 0.143 3.857 12 H 0.071 0.929 13 C -0.126 4.126 14 C -0.119 4.119 15 C -0.130 4.130 16 C 0.080 3.920 17 N -0.600 5.600 18 C 0.544 3.456 19 O -0.414 6.414 20 C 0.024 3.976 21 N -0.347 5.347 22 O 0.108 5.892 23 C -0.035 4.035 24 C -0.196 4.196 25 C 0.138 3.862 26 O -0.373 6.373 27 C 0.060 3.940 28 C -0.067 4.067 29 H 0.249 0.751 30 H 0.379 0.621 31 H 0.041 0.959 32 H 0.016 0.984 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.123 0.877 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.132 0.868 43 H 0.109 0.891 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.257 -14.873 13.199 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.216 4.216 3 Si 0.732 3.268 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.222 1.222 7 C -0.332 4.332 8 H 0.083 0.917 9 N -0.336 5.336 10 C 0.031 3.969 11 C 0.040 3.960 12 H 0.089 0.911 13 C -0.165 4.165 14 C -0.156 4.156 15 C -0.168 4.168 16 C -0.043 4.043 17 N -0.338 5.338 18 C 0.326 3.674 19 O -0.278 6.278 20 C -0.134 4.134 21 N -0.059 5.059 22 O 0.046 5.954 23 C -0.100 4.100 24 C -0.201 4.201 25 C 0.062 3.938 26 O -0.291 6.291 27 C -0.018 4.018 28 C -0.105 4.105 29 H 0.059 0.941 30 H 0.213 0.787 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.140 0.860 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.150 0.850 43 H 0.127 0.873 44 H 0.077 0.923 45 H 0.120 0.880 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.173 -15.010 12.474 19.517 hybrid contribution 0.265 1.012 0.096 1.051 sum 0.438 -13.998 12.570 18.818 Atomic orbital electron populations 1.69670 1.04964 1.24816 1.59414 1.24604 0.95389 0.97161 1.04476 0.86198 0.78706 0.84910 0.76982 1.20845 1.22374 1.22169 1.19136 0.90665 0.84042 1.39385 0.91666 1.42261 1.05316 0.99728 1.86296 1.20891 0.93395 0.84911 0.97656 1.21633 0.96789 0.95646 0.81911 0.91066 1.21985 0.98465 0.94087 1.01988 1.21525 0.99492 0.98187 0.96426 1.21870 1.00597 0.97412 0.96929 1.22414 0.92494 0.85141 1.04266 1.47629 1.50514 1.23624 1.11989 1.17174 0.84521 0.83879 0.81805 1.91349 1.34559 1.28243 1.73688 1.23418 0.98339 0.93560 0.98046 1.74262 1.17934 1.22198 0.91485 1.84603 1.54024 1.37356 1.19441 1.23892 0.97551 0.89808 0.98787 1.21359 1.05183 1.01694 0.91834 1.21090 0.95782 0.89414 0.87524 1.88177 1.90897 1.35202 1.14862 1.22693 0.95918 0.93231 0.89931 1.21013 1.02389 0.98344 0.88745 0.94084 0.78732 0.94125 0.96677 0.91618 0.90748 0.92064 0.91861 0.91991 0.91274 0.86030 0.92164 0.90656 0.85008 0.87256 0.92337 0.87955 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.64 13.06 55.49 0.72 -28.91 16 2 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 3 Si 0.90 23.57 29.55 -169.99 -5.02 18.55 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 7 C -0.20 -5.82 9.16 -15.06 -0.14 -5.95 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.69 -18.27 3.26 -59.91 -0.20 -18.46 16 10 C 0.16 3.39 4.90 -4.04 -0.02 3.37 16 11 C 0.14 2.48 2.93 -67.37 -0.20 2.28 16 12 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 13 C -0.13 -1.69 5.37 -26.39 -0.14 -1.83 16 14 C -0.12 -1.34 5.88 -26.68 -0.16 -1.49 16 15 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 16 C 0.08 1.16 6.32 -3.71 -0.02 1.13 16 17 N -0.60 -10.51 2.97 -165.89 -0.49 -11.00 16 18 C 0.54 10.95 7.45 -12.11 -0.09 10.86 16 19 O -0.41 -9.79 9.61 5.37 0.05 -9.74 16 20 C 0.02 0.44 6.92 -82.90 -0.57 -0.14 16 21 N -0.35 -5.51 8.56 33.26 0.28 -5.23 16 22 O 0.11 1.52 11.17 20.05 0.22 1.74 16 23 C -0.04 -0.47 7.50 -35.23 -0.26 -0.73 16 24 C -0.20 -3.21 6.15 -104.93 -0.65 -3.86 16 25 C 0.14 2.27 6.71 35.68 0.24 2.51 16 26 O -0.37 -5.46 10.76 -35.23 -0.38 -5.84 16 27 C 0.06 0.57 6.77 37.49 0.25 0.82 16 28 C -0.07 -0.59 6.56 -27.56 -0.18 -0.77 16 29 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.38 10.80 7.60 -40.82 -0.31 10.49 16 31 H 0.04 0.93 6.40 -51.93 -0.33 0.60 16 32 H 0.02 0.33 8.10 -51.93 -0.42 -0.09 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.12 1.82 3.76 -73.35 -0.28 1.54 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.13 2.63 7.92 -51.93 -0.41 2.22 16 43 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -34.38 360.18 -8.36 -42.74 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.79 Total: 6.94 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -2.20 Total: 3.79 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: 0.32 Total: -63.61 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.10 Total: -13.83 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.02 Total: 18.55 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.38 -8.36 -42.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714142694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.036 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds