Wall clock time and date at job start Tue Mar 31 2020 18:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86800 * 119.99611 * 2 1 4 4 H 1.48504 * 109.46880 * 239.99789 * 3 2 1 5 5 H 1.48495 * 109.47460 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46839 * 120.00271 * 3 2 1 7 7 C 1.38948 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99890 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99832 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00243 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99810 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47033 * 180.02562 * 12 10 9 14 14 C 1.47445 * 111.00309 * 55.55925 * 13 12 10 15 15 C 1.54308 * 107.23414 * 123.26025 * 14 13 12 16 16 C 1.55148 * 103.02157 * 22.28206 * 15 14 13 17 17 C 1.47837 * 111.00015 * 176.40480 * 13 12 10 18 18 H 1.09000 * 110.37656 * 332.57473 * 17 13 12 19 19 C 1.53001 * 110.37727 * 94.80407 * 17 13 12 20 20 N 1.46500 * 109.47148 * 298.45695 * 19 17 13 21 21 C 1.34773 * 120.00514 * 173.45695 * 20 19 17 22 22 O 1.21283 * 119.99927 * 359.97438 * 21 20 19 23 23 C 1.50700 * 120.00549 * 179.97438 * 21 20 19 24 24 C 1.50693 * 109.47191 * 179.97438 * 23 21 20 25 25 C 1.34512 * 125.78783 * 90.00138 * 24 23 21 26 26 C 1.41388 * 106.84122 * 180.02562 * 25 24 23 27 27 C 1.34508 * 106.83740 * 0.22942 * 26 25 24 28 28 O 1.34298 * 125.79013 * 270.01974 * 24 23 21 29 29 H 0.96995 * 120.00243 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99957 * 359.97438 * 9 7 2 31 31 H 1.08992 * 109.46926 * 60.00054 * 12 10 9 32 32 H 1.09001 * 109.47173 * 300.00037 * 12 10 9 33 33 H 1.08998 * 109.88444 * 242.66768 * 14 13 12 34 34 H 1.08998 * 109.88714 * 3.68894 * 14 13 12 35 35 H 1.09001 * 110.71011 * 140.66663 * 15 14 13 36 36 H 1.09001 * 110.70772 * 263.90181 * 15 14 13 37 37 H 1.08997 * 110.99400 * 206.25336 * 16 15 14 38 38 H 1.08999 * 110.98787 * 82.43972 * 16 15 14 39 39 H 1.08998 * 109.47711 * 178.45810 * 19 17 13 40 40 H 1.08999 * 109.47323 * 58.45450 * 19 17 13 41 41 H 0.97005 * 119.99885 * 353.45128 * 20 19 17 42 42 H 1.09002 * 109.46826 * 59.99486 * 23 21 20 43 43 H 1.08998 * 109.46887 * 300.00315 * 23 21 20 44 44 H 1.08000 * 126.58075 * 359.97438 * 25 24 23 45 45 H 1.07999 * 126.58151 * 179.97438 * 26 25 24 46 46 H 1.08006 * 125.79263 * 179.77544 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9795 0.0016 14 6 3.1336 -5.8747 1.1368 15 6 3.0169 -7.1826 1.9474 16 6 2.4428 -8.1855 0.9122 17 6 1.4958 -7.2773 0.0887 18 1 0.5411 -7.1583 0.6010 19 6 1.2800 -7.8611 -1.3089 20 7 0.4424 -6.9512 -2.0943 21 6 0.2269 -7.1936 -3.4024 22 8 0.7268 -8.1647 -3.9296 23 6 -0.6352 -6.2579 -4.2101 24 6 -0.7151 -6.7501 -5.6322 25 6 -1.6374 -7.5989 -6.1202 26 6 -1.3374 -7.7871 -7.4890 27 6 -0.2467 -7.0461 -7.7543 28 8 0.1228 -6.4160 -6.6272 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3907 0.0005 31 1 0.6169 -4.9208 -0.8886 32 1 0.6175 -4.9205 0.8914 33 1 4.1525 -5.7566 0.7681 34 1 2.8645 -5.0231 1.7615 35 1 3.9967 -7.5081 2.2970 36 1 2.3300 -7.0572 2.7844 37 1 1.8874 -8.9822 1.4068 38 1 3.2345 -8.5949 0.2847 39 1 0.7861 -8.8292 -1.2261 40 1 2.2434 -7.9859 -1.8033 41 1 0.0428 -6.1743 -1.6727 42 1 -0.1995 -5.2589 -4.1957 43 1 -1.6362 -6.2240 -3.7802 44 1 -2.4506 -8.0506 -5.5715 45 1 -1.8777 -8.4099 -8.1866 46 1 0.2468 -6.9687 -8.7119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714616346.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:26 Heat of formation + Delta-G solvation = -44.227123 kcal Electronic energy + Delta-G solvation = -28880.661319 eV Core-core repulsion = 24772.289753 eV Total energy + Delta-G solvation = -4108.371566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.59134 -40.02025 -39.07939 -37.61367 -34.63898 -33.99474 -33.22412 -32.26218 -31.99049 -31.21269 -29.98253 -27.30048 -26.79051 -24.89902 -24.03360 -21.79868 -21.56406 -20.91443 -20.39227 -19.96521 -19.17398 -17.91628 -17.60640 -17.23053 -16.53281 -15.98853 -15.78435 -15.59105 -15.38268 -15.02550 -14.57905 -14.44039 -14.22936 -13.88634 -13.79280 -13.55271 -13.08117 -12.86821 -12.84775 -12.75490 -12.50693 -12.18678 -12.15553 -11.77018 -11.75089 -11.50306 -11.28176 -11.19475 -11.02602 -10.89652 -10.57616 -10.47765 -10.26558 -9.98043 -9.90314 -9.53513 -9.04676 -8.51099 -8.43997 -8.03347 -8.00304 -6.47396 -3.88250 1.66343 2.54133 2.62249 2.87684 3.16251 3.22916 3.27052 3.30909 3.80884 3.92178 4.17487 4.46423 4.55017 4.68468 4.77390 4.90429 4.96421 4.97006 5.05232 5.15066 5.17952 5.19944 5.23163 5.27409 5.50703 5.54594 5.62673 5.72687 5.75447 5.79660 5.84322 5.85137 5.95293 6.03765 6.08114 6.20183 6.27639 6.42791 6.44819 6.56401 7.09843 7.20413 7.22774 7.44465 7.49983 7.99552 8.19266 8.54661 9.12163 9.46869 9.98188 10.70073 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008083 B = 0.003366 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3463.252825 B = 8317.315893 C =11202.987226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.440 3.560 11 O -0.576 6.576 12 C 0.040 3.960 13 N -0.502 5.502 14 C 0.063 3.937 15 C -0.147 4.147 16 C -0.117 4.117 17 C 0.054 3.946 18 H 0.060 0.940 19 C 0.138 3.862 20 N -0.722 5.722 21 C 0.516 3.484 22 O -0.535 6.535 23 C -0.067 4.067 24 C 0.012 3.988 25 C -0.200 4.200 26 C -0.216 4.216 27 C -0.039 4.039 28 O -0.170 6.170 29 H 0.272 0.728 30 H 0.391 0.609 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.400 0.600 42 H 0.117 0.883 43 H 0.124 0.876 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.713 -15.573 -4.443 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.225 3.775 11 O -0.460 6.460 12 C -0.092 4.092 13 N -0.227 5.227 14 C -0.064 4.064 15 C -0.186 4.186 16 C -0.156 4.156 17 C -0.055 4.055 18 H 0.078 0.922 19 C 0.014 3.986 20 N -0.376 5.376 21 C 0.301 3.699 22 O -0.411 6.411 23 C -0.107 4.107 24 C -0.038 4.038 25 C -0.220 4.220 26 C -0.235 4.235 27 C -0.107 4.107 28 O -0.066 6.066 29 H 0.082 0.918 30 H 0.224 0.776 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.237 0.763 42 H 0.135 0.865 43 H 0.142 0.858 44 H 0.163 0.837 45 H 0.164 0.836 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.143 -15.862 -5.244 17.213 hybrid contribution -1.116 1.170 0.800 1.803 sum -5.259 -14.693 -4.444 16.226 Atomic orbital electron populations 1.69592 1.05917 1.28342 1.50391 1.25248 0.95631 0.99706 0.97187 0.85927 0.78802 0.80456 0.79120 1.19838 1.20944 1.19924 1.19642 0.93341 0.82160 1.47797 0.87963 1.41841 1.09114 1.04570 1.64321 1.19647 0.88455 0.84490 0.84892 1.90544 1.13557 1.86800 1.55064 1.22179 0.94535 0.91911 1.00590 1.63265 1.15790 0.99522 1.44122 1.22673 0.98316 0.95437 0.89967 1.22915 1.01416 0.96282 0.97959 1.22628 0.98701 0.97110 0.97148 1.22897 0.97018 0.90835 0.94726 0.92206 1.21374 0.95499 0.91651 0.90052 1.46118 1.52045 1.29743 1.09736 1.20316 0.81394 0.86061 0.82101 1.90726 1.50307 1.29581 1.70515 1.20137 1.02746 1.00686 0.87117 1.21476 0.91957 1.00888 0.89518 1.21487 1.02682 1.02432 0.95351 1.21772 1.00015 1.04931 0.96758 1.23991 0.98672 0.98162 0.89861 1.84018 1.47943 1.57088 1.17518 0.91774 0.77552 0.90165 0.93261 0.89858 0.92092 0.90754 0.91797 0.90798 0.90216 0.91533 0.90339 0.76260 0.86521 0.85811 0.83675 0.83583 0.78213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.66 13.05 55.50 0.72 -22.94 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.08 9.68 -14.93 -0.14 -8.23 16 8 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 9 N -0.56 -13.51 5.29 -10.96 -0.06 -13.56 16 10 C 0.44 9.80 7.10 -10.99 -0.08 9.72 16 11 O -0.58 -14.86 13.97 5.54 0.08 -14.78 16 12 C 0.04 0.65 5.03 -4.97 -0.03 0.62 16 13 N -0.50 -7.74 4.70 -224.83 -1.06 -8.79 16 14 C 0.06 1.00 5.14 -2.84 -0.01 0.98 16 15 C -0.15 -1.68 6.94 -24.91 -0.17 -1.85 16 16 C -0.12 -1.19 6.50 -24.59 -0.16 -1.35 16 17 C 0.05 0.63 2.68 -66.19 -0.18 0.45 16 18 H 0.06 0.63 7.72 -51.93 -0.40 0.23 16 19 C 0.14 1.66 5.39 -4.04 -0.02 1.64 16 20 N -0.72 -8.68 5.35 -60.29 -0.32 -9.01 16 21 C 0.52 7.01 7.82 -10.99 -0.09 6.93 16 22 O -0.53 -9.34 16.01 5.55 0.09 -9.25 16 23 C -0.07 -0.74 6.23 -29.04 -0.18 -0.92 16 24 C 0.01 0.16 5.81 -35.63 -0.21 -0.04 16 25 C -0.20 -2.39 10.81 -39.70 -0.43 -2.82 16 26 C -0.22 -2.36 10.91 -39.70 -0.43 -2.79 16 27 C -0.04 -0.43 12.09 29.41 0.36 -0.08 16 28 O -0.17 -2.40 10.65 5.71 0.06 -2.34 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 30 H 0.39 8.91 7.90 -40.82 -0.32 8.58 16 31 H 0.08 1.13 5.35 -51.93 -0.28 0.85 16 32 H 0.05 0.72 8.00 -51.93 -0.42 0.30 16 33 H 0.08 1.48 8.00 -51.93 -0.42 1.06 16 34 H 0.06 1.09 6.61 -51.93 -0.34 0.75 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.11 8.11 -51.93 -0.42 0.69 16 41 H 0.40 4.25 5.48 -40.82 -0.22 4.03 16 42 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.20 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 381.25 15.07 5.75 5.75 Total: -1.00 -34.33 381.25 -8.19 -42.52 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -6.55 Total: 14.04 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -1.87 Total: 2.79 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.71 Total: -54.30 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: 0.23 Total: -26.38 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.33 -8.19 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714616346.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.705 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds