Wall clock time and date at job start Tue Mar 31 2020 18:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86800 * 119.99611 * 2 1 4 4 H 1.48504 * 109.46880 * 239.99789 * 3 2 1 5 5 H 1.48495 * 109.47460 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46839 * 120.00271 * 3 2 1 7 7 C 1.38948 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99890 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99832 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00243 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99810 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47033 * 180.02562 * 12 10 9 14 14 C 1.47445 * 111.00309 * 55.55925 * 13 12 10 15 15 C 1.54308 * 107.23414 * 123.26025 * 14 13 12 16 16 C 1.55148 * 103.02157 * 22.28206 * 15 14 13 17 17 C 1.47837 * 111.00015 * 176.40480 * 13 12 10 18 18 H 1.09000 * 110.37656 * 332.57473 * 17 13 12 19 19 C 1.53001 * 110.37727 * 94.80407 * 17 13 12 20 20 N 1.46500 * 109.47148 * 298.45695 * 19 17 13 21 21 C 1.34773 * 120.00514 * 173.45695 * 20 19 17 22 22 O 1.21283 * 119.99927 * 359.97438 * 21 20 19 23 23 C 1.50700 * 120.00549 * 179.97438 * 21 20 19 24 24 C 1.50693 * 109.47191 * 179.97438 * 23 21 20 25 25 C 1.34512 * 125.78783 * 90.00138 * 24 23 21 26 26 C 1.41388 * 106.84122 * 180.02562 * 25 24 23 27 27 C 1.34508 * 106.83740 * 0.22942 * 26 25 24 28 28 O 1.34298 * 125.79013 * 270.01974 * 24 23 21 29 29 H 0.96995 * 120.00243 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99957 * 359.97438 * 9 7 2 31 31 H 1.08992 * 109.46926 * 60.00054 * 12 10 9 32 32 H 1.09001 * 109.47173 * 300.00037 * 12 10 9 33 33 H 1.08998 * 109.88444 * 242.66768 * 14 13 12 34 34 H 1.08998 * 109.88714 * 3.68894 * 14 13 12 35 35 H 1.09001 * 110.71011 * 140.66663 * 15 14 13 36 36 H 1.09001 * 110.70772 * 263.90181 * 15 14 13 37 37 H 1.08997 * 110.99400 * 206.25336 * 16 15 14 38 38 H 1.08999 * 110.98787 * 82.43972 * 16 15 14 39 39 H 1.08998 * 109.47711 * 178.45810 * 19 17 13 40 40 H 1.08999 * 109.47323 * 58.45450 * 19 17 13 41 41 H 0.97005 * 119.99885 * 353.45128 * 20 19 17 42 42 H 1.09002 * 109.46826 * 59.99486 * 23 21 20 43 43 H 1.08998 * 109.46887 * 300.00315 * 23 21 20 44 44 H 1.08000 * 126.58075 * 359.97438 * 25 24 23 45 45 H 1.07999 * 126.58151 * 179.97438 * 26 25 24 46 46 H 1.08006 * 125.79263 * 179.77544 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9795 0.0016 14 6 3.1336 -5.8747 1.1368 15 6 3.0169 -7.1826 1.9474 16 6 2.4428 -8.1855 0.9122 17 6 1.4958 -7.2773 0.0887 18 1 0.5411 -7.1583 0.6010 19 6 1.2800 -7.8611 -1.3089 20 7 0.4424 -6.9512 -2.0943 21 6 0.2269 -7.1936 -3.4024 22 8 0.7268 -8.1647 -3.9296 23 6 -0.6352 -6.2579 -4.2101 24 6 -0.7151 -6.7501 -5.6322 25 6 -1.6374 -7.5989 -6.1202 26 6 -1.3374 -7.7871 -7.4890 27 6 -0.2467 -7.0461 -7.7543 28 8 0.1228 -6.4160 -6.6272 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3907 0.0005 31 1 0.6169 -4.9208 -0.8886 32 1 0.6175 -4.9205 0.8914 33 1 4.1525 -5.7566 0.7681 34 1 2.8645 -5.0231 1.7615 35 1 3.9967 -7.5081 2.2970 36 1 2.3300 -7.0572 2.7844 37 1 1.8874 -8.9822 1.4068 38 1 3.2345 -8.5949 0.2847 39 1 0.7861 -8.8292 -1.2261 40 1 2.2434 -7.9859 -1.8033 41 1 0.0428 -6.1743 -1.6727 42 1 -0.1995 -5.2589 -4.1957 43 1 -1.6362 -6.2240 -3.7802 44 1 -2.4506 -8.0506 -5.5715 45 1 -1.8777 -8.4099 -8.1866 46 1 0.2468 -6.9687 -8.7119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714616346.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:25 Heat of formation + Delta-G solvation = -70.262226 kcal Electronic energy + Delta-G solvation = -28881.790286 eV Core-core repulsion = 24772.289753 eV Total energy + Delta-G solvation = -4109.500533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.47675 -41.18578 -40.36601 -39.15376 -36.01861 -35.61544 -34.13210 -33.44400 -33.14987 -32.92456 -30.99055 -28.33052 -28.16191 -26.29067 -25.42407 -22.69167 -22.63197 -21.82557 -21.49978 -21.02652 -20.78292 -19.83750 -18.53964 -18.16979 -17.74320 -17.40790 -16.82102 -16.74893 -16.52092 -16.40212 -16.16690 -15.69621 -15.57426 -15.31594 -14.83972 -14.64912 -14.49148 -13.89935 -13.79500 -13.71144 -13.55176 -13.53024 -13.43673 -13.14707 -12.94986 -12.84380 -12.66249 -12.42617 -12.26900 -12.17900 -12.13356 -11.97049 -11.57075 -11.44804 -11.04947 -10.80659 -10.27752 -10.05513 -9.99000 -9.38212 -9.23220 -8.46174 -5.93948 0.77313 1.38962 1.41925 1.51666 1.58576 1.69965 2.02091 2.07350 2.28390 2.39694 2.77249 3.20645 3.26907 3.60929 3.72469 3.76819 3.85552 4.06540 4.14991 4.16092 4.17591 4.25636 4.31291 4.37289 4.43973 4.46788 4.49966 4.62602 4.69360 4.82200 4.93246 4.95569 5.02355 5.03209 5.11572 5.21702 5.23989 5.38807 5.41749 5.44080 5.64684 5.90064 6.03270 6.15741 6.22730 6.47193 6.61646 7.14058 7.19032 7.56956 8.13206 8.70645 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008083 B = 0.003366 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3463.252825 B = 8317.315893 C =11202.987226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 0.987 3.013 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.076 0.924 9 N -0.570 5.570 10 C 0.438 3.562 11 O -0.617 6.617 12 C 0.053 3.947 13 N -0.524 5.524 14 C 0.065 3.935 15 C -0.136 4.136 16 C -0.110 4.110 17 C 0.059 3.941 18 H 0.085 0.915 19 C 0.140 3.860 20 N -0.715 5.715 21 C 0.514 3.486 22 O -0.579 6.579 23 C -0.064 4.064 24 C -0.018 4.018 25 C -0.207 4.207 26 C -0.226 4.226 27 C -0.049 4.049 28 O -0.200 6.200 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.031 0.969 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.407 0.593 42 H 0.119 0.881 43 H 0.161 0.839 44 H 0.163 0.837 45 H 0.171 0.829 46 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.594 -16.660 -4.080 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.208 4.208 3 Si 0.811 3.189 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.094 0.906 9 N -0.208 5.208 10 C 0.225 3.775 11 O -0.502 6.502 12 C -0.079 4.079 13 N -0.249 5.249 14 C -0.063 4.063 15 C -0.174 4.174 16 C -0.148 4.148 17 C -0.049 4.049 18 H 0.103 0.897 19 C 0.016 3.984 20 N -0.368 5.368 21 C 0.301 3.699 22 O -0.459 6.459 23 C -0.103 4.103 24 C -0.068 4.068 25 C -0.226 4.226 26 C -0.244 4.244 27 C -0.116 4.116 28 O -0.097 6.097 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.246 0.754 42 H 0.137 0.863 43 H 0.178 0.822 44 H 0.181 0.819 45 H 0.189 0.811 46 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -6.061 -16.948 -4.857 18.643 hybrid contribution -0.491 1.451 0.650 1.664 sum -6.552 -15.497 -4.208 17.343 Atomic orbital electron populations 1.69640 1.06586 1.29300 1.50179 1.25926 0.96508 1.02071 0.96344 0.85078 0.77870 0.77150 0.78800 1.20010 1.19412 1.19878 1.19558 0.92568 0.84070 1.50005 0.90645 1.41875 1.09291 1.04519 1.65117 1.20732 0.88337 0.85995 0.82441 1.90524 1.15792 1.87751 1.56182 1.22065 0.94149 0.88722 1.02944 1.63178 1.16406 1.00870 1.44460 1.22502 0.96708 0.96943 0.90163 1.22840 1.02642 0.93947 0.98013 1.22655 0.98525 0.97181 0.96449 1.22989 0.98099 0.88939 0.94901 0.89697 1.21376 0.94499 0.92611 0.89892 1.46094 1.51485 1.29820 1.09448 1.20772 0.81005 0.85758 0.82408 1.90700 1.52181 1.31632 1.71390 1.20258 1.04200 0.99708 0.86104 1.21939 0.92529 1.02108 0.90243 1.21873 1.02812 1.01837 0.96063 1.22179 1.00177 1.05149 0.96936 1.24766 0.98980 0.97571 0.90272 1.83997 1.48928 1.58120 1.18632 0.91290 0.76865 0.87670 0.90665 0.93209 0.95012 0.89771 0.90292 0.87457 0.90643 0.89620 0.93001 0.75356 0.86258 0.82153 0.81921 0.81113 0.75111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.69 13.05 21.66 0.28 -47.41 16 2 C -0.01 -0.43 5.50 84.92 0.47 0.04 16 3 Si 0.99 42.26 29.55 68.60 2.03 44.29 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.33 -18.39 9.68 84.04 0.81 -17.58 16 8 H 0.08 4.50 7.16 -2.91 -0.02 4.48 16 9 N -0.57 -27.89 5.29 -306.98 -1.62 -29.51 16 10 C 0.44 19.85 7.10 87.66 0.62 20.47 16 11 O -0.62 -33.19 13.97 -3.08 -0.04 -33.23 16 12 C 0.05 1.64 5.03 85.56 0.43 2.07 16 13 N -0.52 -15.70 4.70 -865.22 -4.07 -19.76 16 14 C 0.06 2.05 5.14 86.64 0.45 2.50 16 15 C -0.14 -2.83 6.94 31.77 0.22 -2.61 16 16 C -0.11 -1.90 6.50 31.98 0.21 -1.69 16 17 C 0.06 1.21 2.68 45.39 0.12 1.33 16 18 H 0.09 1.40 7.72 -2.39 -0.02 1.38 16 19 C 0.14 3.12 5.39 86.38 0.47 3.58 16 20 N -0.71 -15.95 5.35 -463.06 -2.48 -18.42 16 21 C 0.51 13.52 7.82 87.66 0.69 14.21 16 22 O -0.58 -20.25 16.01 -3.04 -0.05 -20.30 16 23 C -0.06 -1.32 6.23 29.10 0.18 -1.14 16 24 C -0.02 -0.47 5.81 24.83 0.14 -0.32 16 25 C -0.21 -4.70 10.81 22.19 0.24 -4.46 16 26 C -0.23 -4.64 10.91 22.19 0.24 -4.40 16 27 C -0.05 -1.05 12.09 66.97 0.81 -0.24 16 28 O -0.20 -5.67 10.65 -2.48 -0.03 -5.70 16 29 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 30 H 0.40 18.11 7.90 -92.71 -0.73 17.37 16 31 H 0.11 2.74 5.35 -2.39 -0.01 2.72 16 32 H 0.08 2.00 8.00 -2.39 -0.02 1.98 16 33 H 0.05 1.87 8.00 -2.39 -0.02 1.85 16 34 H 0.03 1.17 6.61 -2.39 -0.02 1.15 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.40 8.06 -2.39 -0.02 1.38 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.05 1.45 8.11 -2.39 -0.02 1.43 16 41 H 0.41 7.66 5.48 -92.70 -0.51 7.15 16 42 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.16 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 45 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 46 H 0.23 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -78.13 381.25 -0.10 -78.23 By element: Atomic # 1 Polarization: 40.29 SS G_CDS: -0.22 Total: 40.07 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 6.10 Total: 11.75 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -7.88 Total: -115.10 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: -0.12 Total: -59.23 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -78.13 -0.10 -78.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714616346.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.963 kcal (2) G-P(sol) polarization free energy of solvation -78.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds