Wall clock time and date at job start Tue Mar 31 2020 18:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 120.00004 * 2 1 4 4 H 1.48497 * 109.47260 * 269.99502 * 3 2 1 5 5 H 1.48497 * 109.47116 * 30.00165 * 3 2 1 6 6 H 1.48500 * 109.46952 * 149.99933 * 3 2 1 7 7 C 1.38955 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00032 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99729 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99841 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99861 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.46967 * 180.02562 * 12 10 9 14 14 C 1.48561 * 111.00009 * 279.55311 * 13 12 10 15 15 C 1.54379 * 104.59288 * 200.96388 * 14 13 12 16 16 C 1.54252 * 105.06246 * 23.85037 * 15 14 13 17 17 C 1.48565 * 110.99825 * 164.13610 * 13 12 10 18 18 H 1.08996 * 110.51460 * 40.20839 * 17 13 12 19 19 C 1.53004 * 110.40497 * 277.81608 * 17 13 12 20 20 N 1.46502 * 109.46710 * 179.71124 * 19 17 13 21 21 C 1.34776 * 120.00408 * 174.99379 * 20 19 17 22 22 O 1.21288 * 119.99583 * 359.97438 * 21 20 19 23 23 C 1.50693 * 120.00516 * 179.97438 * 21 20 19 24 24 C 1.50697 * 109.47637 * 179.97438 * 23 21 20 25 25 C 1.34525 * 125.78799 * 89.71111 * 24 23 21 26 26 C 1.41380 * 106.83689 * 180.26900 * 25 24 23 27 27 C 1.34508 * 106.84603 * 0.02562 * 26 25 24 28 28 O 1.34303 * 108.42240 * 359.97438 * 27 26 25 29 29 H 0.97005 * 119.99770 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00287 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47143 * 59.99922 * 12 10 9 32 32 H 1.08998 * 109.47194 * 299.99986 * 12 10 9 33 33 H 1.08992 * 110.41293 * 82.17777 * 14 13 12 34 34 H 1.09006 * 110.50629 * 319.78945 * 14 13 12 35 35 H 1.09002 * 110.31842 * 264.95390 * 15 14 13 36 36 H 1.09005 * 110.41088 * 142.79429 * 15 14 13 37 37 H 1.09004 * 110.32338 * 241.10522 * 16 15 14 38 38 H 1.09001 * 110.32685 * 118.90350 * 16 15 14 39 39 H 1.08993 * 109.47527 * 59.71585 * 19 17 13 40 40 H 1.08996 * 109.47592 * 299.70554 * 19 17 13 41 41 H 0.97007 * 119.99739 * 354.98434 * 20 19 17 42 42 H 1.09004 * 109.47153 * 59.99789 * 23 21 20 43 43 H 1.09001 * 109.47424 * 299.99756 * 23 21 20 44 44 H 1.07997 * 126.57785 * 0.26981 * 25 24 23 45 45 H 1.07998 * 126.57507 * 179.97438 * 26 25 24 46 46 H 1.08003 * 125.79477 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1983 -5.9795 0.0016 14 6 2.7193 -6.2352 -1.3660 15 6 3.2383 -7.6884 -1.3191 16 6 2.4562 -8.3565 -0.1696 17 6 1.5302 -7.2510 0.3813 18 1 0.5443 -7.3166 -0.0787 19 6 1.4161 -7.3598 1.9032 20 7 0.7491 -8.6160 2.2542 21 6 0.6276 -8.9763 3.5472 22 8 1.0710 -8.2606 4.4203 23 6 -0.0590 -10.2682 3.9083 24 6 -0.0614 -10.4344 5.4061 25 6 -1.0156 -9.9926 6.2451 26 6 -0.6136 -10.3570 7.5507 27 6 0.5623 -10.9990 7.4316 28 8 0.8919 -11.0431 6.1303 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6167 -4.9209 -0.8886 32 1 0.6174 -4.9205 0.8913 33 1 3.5330 -5.5481 -1.5974 34 1 1.9213 -6.1401 -2.1025 35 1 4.3075 -7.7017 -1.1074 36 1 3.0332 -8.1959 -2.2617 37 1 3.1414 -8.6979 0.6062 38 1 1.8658 -9.1909 -0.5483 39 1 0.8345 -6.5208 2.2849 40 1 2.4125 -7.3420 2.3446 41 1 0.3946 -9.1886 1.5559 42 1 0.4732 -11.1026 3.4514 43 1 -1.0858 -10.2484 3.5430 44 1 -1.9159 -9.4616 5.9734 45 1 -1.1479 -10.1572 8.4678 46 1 1.1431 -11.4094 8.2444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714616347.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:29 Heat of formation + Delta-G solvation = -47.955276 kcal Electronic energy + Delta-G solvation = -28096.821574 eV Core-core repulsion = 23988.288343 eV Total energy + Delta-G solvation = -4108.533231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.75221 -40.01019 -39.08504 -37.60557 -34.84919 -33.87068 -33.39221 -32.44055 -32.04559 -31.10212 -30.00966 -27.41417 -26.75379 -24.91355 -24.07999 -21.95871 -21.50796 -21.00930 -20.43361 -20.14184 -19.16168 -17.85433 -17.76197 -17.41483 -16.37076 -16.01087 -15.82109 -15.75985 -15.55177 -14.89334 -14.67181 -14.41630 -14.37177 -13.94223 -13.77287 -13.69542 -13.23263 -13.01927 -12.94032 -12.89450 -12.60561 -12.29863 -12.04960 -12.01690 -11.73260 -11.45277 -11.19748 -11.16749 -10.99010 -10.87626 -10.49546 -10.36509 -10.18600 -10.15477 -10.06490 -9.46235 -9.20306 -8.67193 -8.55829 -8.03330 -7.92062 -6.38314 -3.78768 1.48591 2.39464 2.43538 2.70030 3.06478 3.20237 3.28654 3.35109 3.93631 4.02574 4.26026 4.26903 4.51946 4.53131 4.69445 4.71177 4.80743 4.89929 4.94604 5.01493 5.10952 5.17851 5.24105 5.28266 5.43524 5.60069 5.61209 5.68088 5.71184 5.74717 5.82221 5.85871 5.87699 5.98997 6.02156 6.17187 6.22965 6.29856 6.32030 6.34122 6.92334 7.04696 7.16364 7.27205 7.58586 8.03149 8.09828 8.65880 9.22127 9.58398 10.10747 10.79655 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012411 B = 0.002244 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.476701 B =12472.285204 C =14158.762024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.447 3.553 11 O -0.574 6.574 12 C 0.032 3.968 13 N -0.474 5.474 14 C 0.040 3.960 15 C -0.123 4.123 16 C -0.118 4.118 17 C 0.048 3.952 18 H 0.056 0.944 19 C 0.133 3.867 20 N -0.727 5.727 21 C 0.511 3.489 22 O -0.523 6.523 23 C -0.060 4.060 24 C 0.003 3.997 25 C -0.195 4.195 26 C -0.213 4.213 27 C -0.038 4.038 28 O -0.173 6.173 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.399 0.601 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.968 -25.530 4.419 26.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.204 5.204 10 C 0.232 3.768 11 O -0.457 6.457 12 C -0.099 4.099 13 N -0.199 5.199 14 C -0.088 4.088 15 C -0.161 4.161 16 C -0.156 4.156 17 C -0.061 4.061 18 H 0.074 0.926 19 C 0.009 3.991 20 N -0.380 5.380 21 C 0.295 3.705 22 O -0.398 6.398 23 C -0.100 4.100 24 C -0.048 4.048 25 C -0.214 4.214 26 C -0.233 4.233 27 C -0.106 4.106 28 O -0.069 6.069 29 H 0.081 0.919 30 H 0.224 0.776 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.233 0.767 42 H 0.130 0.870 43 H 0.141 0.859 44 H 0.165 0.835 45 H 0.166 0.834 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.253 -24.780 5.311 25.551 hybrid contribution -1.372 0.644 -0.708 1.672 sum -4.624 -24.136 4.603 25.003 Atomic orbital electron populations 1.69613 1.05921 1.28067 1.50912 1.25251 0.95634 0.99679 0.97473 0.85865 0.79285 0.80882 0.78313 1.20477 1.20948 1.19406 1.19687 0.93336 0.82204 1.47374 0.87949 1.41858 1.09125 1.04578 1.64872 1.19666 0.88406 0.84374 0.84394 1.90519 1.13616 1.86938 1.54656 1.22114 0.94084 0.92049 1.01695 1.64914 1.30562 1.00741 1.23646 1.23136 1.00188 0.96627 0.88860 1.22289 1.00810 0.95185 0.97843 1.22346 0.98155 0.96616 0.98478 1.22832 0.96946 0.91814 0.94545 0.92614 1.21258 0.98760 0.85051 0.94015 1.45873 1.60467 1.24351 1.07274 1.20351 0.80133 0.87330 0.82639 1.90798 1.47480 1.53576 1.47916 1.20073 1.04016 0.97409 0.88471 1.21452 0.89223 1.00977 0.93110 1.21546 1.01920 1.05362 0.92584 1.21811 0.98190 1.04644 0.98614 1.23999 0.98283 1.04788 0.83506 1.83980 1.43238 1.61462 1.18190 0.91942 0.77586 0.92887 0.89475 0.88757 0.94202 0.90891 0.91577 0.90743 0.91539 0.91250 0.89949 0.76721 0.87021 0.85867 0.83550 0.83446 0.78108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.89 13.05 55.50 0.72 -24.16 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.57 -14.56 5.29 -10.96 -0.06 -14.62 16 10 C 0.45 10.67 7.69 -10.98 -0.08 10.58 16 11 O -0.57 -15.78 15.30 5.55 0.08 -15.69 16 12 C 0.03 0.57 5.31 -4.98 -0.03 0.55 16 13 N -0.47 -7.64 4.56 -223.57 -1.02 -8.66 16 14 C 0.04 0.58 6.08 -2.18 -0.01 0.57 16 15 C -0.12 -1.35 7.00 -25.35 -0.18 -1.53 16 16 C -0.12 -1.13 6.22 -25.36 -0.16 -1.29 16 17 C 0.05 0.56 2.32 -66.07 -0.15 0.40 16 18 H 0.06 0.57 8.00 -51.93 -0.42 0.15 16 19 C 0.13 1.65 5.22 -4.04 -0.02 1.63 16 20 N -0.73 -6.61 5.35 -60.30 -0.32 -6.93 16 21 C 0.51 5.70 7.82 -10.99 -0.09 5.62 16 22 O -0.52 -8.74 16.03 5.55 0.09 -8.65 16 23 C -0.06 -0.44 6.23 -29.04 -0.18 -0.62 16 24 C 0.00 0.03 5.82 -35.62 -0.21 -0.18 16 25 C -0.19 -2.03 10.81 -39.70 -0.43 -2.46 16 26 C -0.21 -2.05 10.91 -39.71 -0.43 -2.48 16 27 C -0.04 -0.35 12.09 29.41 0.36 0.00 16 28 O -0.17 -1.97 10.65 5.70 0.06 -1.91 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 31 H 0.05 0.84 7.64 -51.93 -0.40 0.44 16 32 H 0.09 1.43 7.06 -51.93 -0.37 1.06 16 33 H 0.09 1.65 7.66 -51.93 -0.40 1.25 16 34 H 0.04 0.54 7.68 -51.93 -0.40 0.14 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.75 7.82 -51.93 -0.41 0.35 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 1.00 7.25 -51.93 -0.38 0.62 16 40 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 41 H 0.40 2.16 8.36 -40.82 -0.34 1.82 16 42 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.20 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -36.91 387.59 -8.21 -45.12 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.73 Total: 10.54 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -1.86 Total: 2.75 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.68 Total: -54.37 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: 0.23 Total: -26.25 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.91 -8.21 -45.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714616347.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.837 kcal (2) G-P(sol) polarization free energy of solvation -36.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds