Wall clock time and date at job start Tue Mar 31 2020 18:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 120.00004 * 2 1 4 4 H 1.48497 * 109.47260 * 269.99502 * 3 2 1 5 5 H 1.48497 * 109.47116 * 30.00165 * 3 2 1 6 6 H 1.48500 * 109.46952 * 149.99933 * 3 2 1 7 7 C 1.38955 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00032 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99729 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99841 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99861 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.46967 * 180.02562 * 12 10 9 14 14 C 1.48561 * 111.00009 * 279.55311 * 13 12 10 15 15 C 1.54379 * 104.59288 * 200.96388 * 14 13 12 16 16 C 1.54252 * 105.06246 * 23.85037 * 15 14 13 17 17 C 1.48565 * 110.99825 * 164.13610 * 13 12 10 18 18 H 1.08996 * 110.51460 * 40.20839 * 17 13 12 19 19 C 1.53004 * 110.40497 * 277.81608 * 17 13 12 20 20 N 1.46502 * 109.46710 * 179.71124 * 19 17 13 21 21 C 1.34776 * 120.00408 * 174.99379 * 20 19 17 22 22 O 1.21288 * 119.99583 * 359.97438 * 21 20 19 23 23 C 1.50693 * 120.00516 * 179.97438 * 21 20 19 24 24 C 1.50697 * 109.47637 * 179.97438 * 23 21 20 25 25 C 1.34525 * 125.78799 * 89.71111 * 24 23 21 26 26 C 1.41380 * 106.83689 * 180.26900 * 25 24 23 27 27 C 1.34508 * 106.84603 * 0.02562 * 26 25 24 28 28 O 1.34303 * 108.42240 * 359.97438 * 27 26 25 29 29 H 0.97005 * 119.99770 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00287 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47143 * 59.99922 * 12 10 9 32 32 H 1.08998 * 109.47194 * 299.99986 * 12 10 9 33 33 H 1.08992 * 110.41293 * 82.17777 * 14 13 12 34 34 H 1.09006 * 110.50629 * 319.78945 * 14 13 12 35 35 H 1.09002 * 110.31842 * 264.95390 * 15 14 13 36 36 H 1.09005 * 110.41088 * 142.79429 * 15 14 13 37 37 H 1.09004 * 110.32338 * 241.10522 * 16 15 14 38 38 H 1.09001 * 110.32685 * 118.90350 * 16 15 14 39 39 H 1.08993 * 109.47527 * 59.71585 * 19 17 13 40 40 H 1.08996 * 109.47592 * 299.70554 * 19 17 13 41 41 H 0.97007 * 119.99739 * 354.98434 * 20 19 17 42 42 H 1.09004 * 109.47153 * 59.99789 * 23 21 20 43 43 H 1.09001 * 109.47424 * 299.99756 * 23 21 20 44 44 H 1.07997 * 126.57785 * 0.26981 * 25 24 23 45 45 H 1.07998 * 126.57507 * 179.97438 * 26 25 24 46 46 H 1.08003 * 125.79477 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1983 -5.9795 0.0016 14 6 2.7193 -6.2352 -1.3660 15 6 3.2383 -7.6884 -1.3191 16 6 2.4562 -8.3565 -0.1696 17 6 1.5302 -7.2510 0.3813 18 1 0.5443 -7.3166 -0.0787 19 6 1.4161 -7.3598 1.9032 20 7 0.7491 -8.6160 2.2542 21 6 0.6276 -8.9763 3.5472 22 8 1.0710 -8.2606 4.4203 23 6 -0.0590 -10.2682 3.9083 24 6 -0.0614 -10.4344 5.4061 25 6 -1.0156 -9.9926 6.2451 26 6 -0.6136 -10.3570 7.5507 27 6 0.5623 -10.9990 7.4316 28 8 0.8919 -11.0431 6.1303 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6167 -4.9209 -0.8886 32 1 0.6174 -4.9205 0.8913 33 1 3.5330 -5.5481 -1.5974 34 1 1.9213 -6.1401 -2.1025 35 1 4.3075 -7.7017 -1.1074 36 1 3.0332 -8.1959 -2.2617 37 1 3.1414 -8.6979 0.6062 38 1 1.8658 -9.1909 -0.5483 39 1 0.8345 -6.5208 2.2849 40 1 2.4125 -7.3420 2.3446 41 1 0.3946 -9.1886 1.5559 42 1 0.4732 -11.1026 3.4514 43 1 -1.0858 -10.2484 3.5430 44 1 -1.9159 -9.4616 5.9734 45 1 -1.1479 -10.1572 8.4678 46 1 1.1431 -11.4094 8.2444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714616347.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:28 Heat of formation + Delta-G solvation = -77.091770 kcal Electronic energy + Delta-G solvation = -28098.085027 eV Core-core repulsion = 23988.288343 eV Total energy + Delta-G solvation = -4109.796684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.46426 -41.03193 -40.36388 -39.24539 -36.03386 -35.73621 -34.12189 -33.46385 -33.14706 -32.95241 -30.94193 -28.33500 -28.14325 -26.22554 -25.56558 -22.68201 -22.44118 -22.01378 -21.34917 -21.06005 -20.87930 -19.89554 -18.55364 -18.18273 -17.68103 -17.30452 -16.83870 -16.72286 -16.55014 -16.37044 -16.03164 -15.81804 -15.60296 -15.37297 -14.82983 -14.71914 -14.46933 -14.17588 -13.79593 -13.73189 -13.61952 -13.53917 -13.48895 -13.04704 -12.92618 -12.92290 -12.61913 -12.42826 -12.30155 -12.15406 -12.13261 -11.88165 -11.50430 -11.35003 -11.11273 -10.81518 -10.36425 -10.13758 -10.01404 -9.38308 -9.37505 -8.47434 -5.95892 0.76247 1.36363 1.39635 1.52659 1.60227 1.66973 2.01473 2.05573 2.24173 2.31805 2.89987 3.18875 3.38490 3.58948 3.62376 3.74018 3.98480 4.04264 4.15557 4.18348 4.19610 4.21570 4.31938 4.39866 4.41936 4.46287 4.50996 4.54027 4.69632 4.80026 4.93493 4.98992 5.02501 5.04100 5.06792 5.23456 5.25277 5.32193 5.35814 5.39935 5.62433 5.85620 5.97090 6.08824 6.21084 6.54778 6.60544 7.12799 7.26242 7.56295 8.13048 8.70162 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012411 B = 0.002244 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.476701 B =12472.285204 C =14158.762024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.992 3.008 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.332 4.332 8 H 0.076 0.924 9 N -0.577 5.577 10 C 0.441 3.559 11 O -0.617 6.617 12 C 0.048 3.952 13 N -0.509 5.509 14 C 0.036 3.964 15 C -0.116 4.116 16 C -0.109 4.109 17 C 0.055 3.945 18 H 0.086 0.914 19 C 0.141 3.859 20 N -0.704 5.704 21 C 0.508 3.492 22 O -0.588 6.588 23 C -0.050 4.050 24 C -0.018 4.018 25 C -0.215 4.215 26 C -0.232 4.232 27 C -0.045 4.045 28 O -0.193 6.193 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.045 0.955 40 H 0.049 0.951 41 H 0.422 0.578 42 H 0.144 0.856 43 H 0.162 0.838 44 H 0.157 0.843 45 H 0.164 0.836 46 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.584 -27.779 3.440 28.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.816 3.184 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.461 4.461 8 H 0.094 0.906 9 N -0.215 5.215 10 C 0.229 3.771 11 O -0.502 6.502 12 C -0.084 4.084 13 N -0.234 5.234 14 C -0.091 4.091 15 C -0.154 4.154 16 C -0.147 4.147 17 C -0.053 4.053 18 H 0.104 0.896 19 C 0.016 3.984 20 N -0.358 5.358 21 C 0.295 3.705 22 O -0.467 6.467 23 C -0.089 4.089 24 C -0.068 4.068 25 C -0.234 4.234 26 C -0.251 4.251 27 C -0.112 4.112 28 O -0.090 6.090 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.261 0.739 42 H 0.161 0.839 43 H 0.179 0.821 44 H 0.174 0.826 45 H 0.182 0.818 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -4.916 -27.082 4.285 27.856 hybrid contribution -0.848 1.322 -0.362 1.612 sum -5.764 -25.759 3.923 26.686 Atomic orbital electron populations 1.69670 1.06769 1.29242 1.50537 1.26031 0.96581 1.02359 0.96395 0.84944 0.77820 0.76947 0.78723 1.19398 1.19471 1.20032 1.19629 0.92595 0.84076 1.49827 0.90556 1.41938 1.09252 1.04713 1.65564 1.20830 0.88311 0.85960 0.82034 1.90485 1.15867 1.87902 1.55973 1.21915 0.93730 0.89293 1.03456 1.64769 1.31464 1.02238 1.24909 1.23106 0.99370 0.98176 0.88493 1.22265 1.00225 0.92919 0.99984 1.22374 0.97907 0.96824 0.97614 1.22872 0.98607 0.90176 0.93639 0.89633 1.20954 0.96905 0.85893 0.94662 1.45603 1.59361 1.23296 1.07553 1.21098 0.79109 0.87971 0.82276 1.90778 1.50341 1.55843 1.49782 1.20232 1.06102 0.95733 0.86822 1.22062 0.89021 1.01010 0.94677 1.21903 1.02649 1.05636 0.93242 1.22176 0.98766 1.04939 0.99201 1.24717 0.98552 1.04363 0.83583 1.83972 1.43907 1.61938 1.19138 0.91314 0.77074 0.90307 0.88110 0.93035 0.92792 0.92054 0.88531 0.91449 0.87094 0.93674 0.93214 0.73922 0.83851 0.82062 0.82565 0.81792 0.75009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.72 13.05 21.66 0.28 -50.44 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.99 44.13 29.55 68.60 2.03 46.16 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.33 -19.41 9.68 84.04 0.81 -18.60 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.58 -30.56 5.29 -306.98 -1.62 -32.18 16 10 C 0.44 21.80 7.69 87.66 0.67 22.48 16 11 O -0.62 -35.64 15.30 -3.05 -0.05 -35.69 16 12 C 0.05 1.67 5.31 85.56 0.45 2.13 16 13 N -0.51 -16.17 4.56 -861.24 -3.92 -20.09 16 14 C 0.04 1.04 6.08 86.45 0.53 1.56 16 15 C -0.12 -2.27 7.00 31.49 0.22 -2.05 16 16 C -0.11 -1.71 6.22 31.49 0.20 -1.52 16 17 C 0.06 1.15 2.32 45.06 0.10 1.26 16 18 H 0.09 1.34 8.00 -2.39 -0.02 1.33 16 19 C 0.14 3.41 5.22 86.38 0.45 3.86 16 20 N -0.70 -11.11 5.35 -463.07 -2.48 -13.59 16 21 C 0.51 10.66 7.82 87.65 0.69 11.34 16 22 O -0.59 -20.09 16.03 -3.05 -0.05 -20.14 16 23 C -0.05 -0.59 6.23 29.10 0.18 -0.41 16 24 C -0.02 -0.35 5.82 24.83 0.14 -0.21 16 25 C -0.22 -4.34 10.81 22.19 0.24 -4.10 16 26 C -0.23 -4.31 10.91 22.19 0.24 -4.07 16 27 C -0.05 -0.80 12.09 66.97 0.81 0.01 16 28 O -0.19 -4.28 10.65 -2.52 -0.03 -4.30 16 29 H 0.28 14.27 8.31 -92.70 -0.77 13.50 16 30 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 31 H 0.08 2.36 7.64 -2.39 -0.02 2.34 16 32 H 0.10 3.24 7.06 -2.39 -0.02 3.23 16 33 H 0.05 1.89 7.66 -2.39 -0.02 1.87 16 34 H 0.05 1.37 7.68 -2.38 -0.02 1.35 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.07 1.19 7.82 -2.39 -0.02 1.17 16 38 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.04 1.31 7.25 -2.39 -0.02 1.30 16 40 H 0.05 1.54 8.08 -2.39 -0.02 1.52 16 41 H 0.42 2.67 8.36 -92.70 -0.78 1.90 16 42 H 0.14 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.16 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 45 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 46 H 0.23 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -86.76 387.59 -0.12 -86.88 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.49 Total: 32.03 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 6.21 Total: 11.37 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -7.74 Total: -116.30 kcal Atomic # 8 Polarization: -60.01 SS G_CDS: -0.12 Total: -60.13 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -86.76 -0.12 -86.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714616347.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.790 kcal (2) G-P(sol) polarization free energy of solvation -86.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds