Wall clock time and date at job start Tue Mar 31 2020 18:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 119.99992 * 2 1 4 4 H 1.48503 * 109.46809 * 269.99661 * 3 2 1 5 5 H 1.48495 * 109.47387 * 29.99612 * 3 2 1 6 6 H 1.48500 * 109.47460 * 150.00258 * 3 2 1 7 7 C 1.38947 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00246 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00291 * 0.02562 * 7 2 1 10 10 C 1.34769 * 120.00510 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99846 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00209 * 179.97438 * 10 9 7 13 13 N 1.46907 * 109.47040 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99880 * 185.60354 * 13 12 10 15 15 C 1.53003 * 110.05446 * 303.62542 * 14 13 12 16 16 N 1.46499 * 109.46889 * 302.09171 * 15 14 13 17 17 C 1.34777 * 120.00082 * 174.85554 * 16 15 14 18 18 O 1.21694 * 119.99908 * 0.02562 * 17 16 15 19 19 C 1.46657 * 120.00184 * 180.02562 * 17 16 15 20 20 C 1.36544 * 125.98865 * 179.71869 * 19 17 16 21 21 C 1.40363 * 106.70840 * 179.91101 * 20 19 17 22 22 C 1.35125 * 107.11397 * 0.35219 * 21 20 19 23 23 O 1.33929 * 108.77084 * 359.77821 * 22 21 20 24 24 C 1.53882 * 110.03170 * 65.03666 * 14 13 12 25 25 C 1.54268 * 106.59459 * 119.28420 * 24 14 13 26 26 C 1.54887 * 104.19752 * 336.39377 * 25 24 14 27 27 C 1.54258 * 110.03243 * 182.20477 * 14 13 12 28 28 H 0.97002 * 119.99510 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99547 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.47482 * 59.99959 * 12 10 9 31 31 H 1.08999 * 109.47191 * 299.99603 * 12 10 9 32 32 H 1.00893 * 110.99755 * 61.65506 * 13 12 10 33 33 H 1.08996 * 109.47462 * 62.09349 * 15 14 13 34 34 H 1.09001 * 109.46836 * 182.09980 * 15 14 13 35 35 H 0.97001 * 120.00058 * 354.86407 * 16 15 14 36 36 H 1.07996 * 126.64463 * 0.04085 * 20 19 17 37 37 H 1.07999 * 126.44398 * 180.15517 * 21 20 19 38 38 H 1.08007 * 125.61776 * 179.78031 * 22 21 20 39 39 H 1.08996 * 110.03084 * 0.02562 * 24 14 13 40 40 H 1.09003 * 110.03029 * 238.56975 * 24 14 13 41 41 H 1.09002 * 110.48525 * 95.07294 * 25 24 14 42 42 H 1.08997 * 110.48344 * 217.71057 * 25 24 14 43 43 H 1.08997 * 110.75461 * 156.25871 * 26 25 24 44 44 H 1.09000 * 110.74990 * 279.62589 * 26 25 24 45 45 H 1.09000 * 110.49021 * 145.64662 * 27 14 13 46 46 H 1.09002 * 110.48780 * 23.00557 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1984 -5.9795 0.0004 14 6 1.5030 -7.2666 -0.1330 15 6 0.4681 -7.4219 0.9832 16 7 1.1342 -7.3209 2.2841 17 6 0.4041 -7.3245 3.4170 18 8 -0.8083 -7.4120 3.3593 19 6 1.0708 -7.2228 4.7193 20 6 0.4542 -7.2094 5.9375 21 6 1.4683 -7.1020 6.9020 22 6 2.6441 -7.0472 6.2383 23 8 2.4005 -7.1204 4.9234 24 6 0.8142 -7.3537 -1.5063 25 6 1.4367 -8.5621 -2.2356 26 6 2.8200 -8.7409 -1.5621 27 6 2.5199 -8.4251 -0.0758 28 1 -0.4849 0.8401 0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6167 -4.9209 -0.8886 31 1 0.6175 -4.9204 0.8914 32 1 2.7739 -5.9636 0.8289 33 1 -0.2809 -6.6348 0.8964 34 1 -0.0156 -8.3949 0.8973 35 1 2.1006 -7.2514 2.3301 36 1 -0.6079 -7.2717 6.1231 37 1 1.3340 -7.0662 7.9730 38 1 3.6197 -6.9590 6.6933 39 1 0.9963 -6.4411 -2.0738 40 1 -0.2574 -7.5067 -1.3774 41 1 0.8241 -9.4520 -2.0909 42 1 1.5543 -8.3475 -3.2977 43 1 3.1752 -9.7651 -1.6754 44 1 3.5421 -8.0332 -1.9693 45 1 2.0824 -9.2928 0.4178 46 1 3.4282 -8.1104 0.4382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715296450.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:58 Heat of formation + Delta-G solvation = -83.532909 kcal Electronic energy + Delta-G solvation = -29297.199639 eV Core-core repulsion = 25187.123646 eV Total energy + Delta-G solvation = -4110.075993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.67648 -41.32091 -40.18183 -39.49615 -36.09219 -35.85822 -34.68332 -34.03826 -33.25766 -31.39183 -29.97805 -29.76833 -27.96769 -26.33290 -25.33970 -23.81795 -22.72660 -21.99834 -21.26636 -20.99439 -20.23950 -19.88653 -19.42634 -17.98104 -17.44786 -17.42350 -17.36989 -16.83320 -16.58747 -16.27342 -16.04113 -15.81583 -15.69437 -15.32944 -14.93814 -14.63319 -14.27892 -14.17761 -13.98820 -13.95812 -13.86167 -13.59782 -13.51814 -13.08178 -12.80183 -12.46616 -12.42219 -12.14842 -12.07050 -11.91152 -11.87041 -11.77750 -11.51900 -11.50223 -11.33010 -11.08543 -10.42994 -10.35275 -10.03004 -9.68748 -9.40224 -8.47608 -5.96859 -0.02602 1.36951 1.39053 1.40341 1.53449 1.61193 2.02311 2.03074 2.11627 2.27816 2.84758 3.19134 3.41322 3.52004 3.60278 3.74972 3.84145 3.92417 4.08117 4.20842 4.28998 4.31257 4.36225 4.46465 4.56498 4.58106 4.60972 4.67310 4.86057 4.87027 4.91360 4.92934 4.99566 5.07625 5.12856 5.17456 5.30325 5.31432 5.36448 5.39412 5.59089 5.78240 5.87005 6.07001 6.25953 6.36030 6.57859 6.86194 7.10931 7.54025 8.08923 8.69920 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007766 B = 0.003765 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3604.506405 B = 7435.298724 C = 9919.935691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.440 3.560 11 O -0.617 6.617 12 C 0.064 3.936 13 N -0.652 5.652 14 C 0.106 3.894 15 C 0.093 3.907 16 N -0.707 5.707 17 C 0.600 3.400 18 O -0.558 6.558 19 C -0.115 4.115 20 C -0.125 4.125 21 C -0.234 4.234 22 C 0.009 3.991 23 O -0.173 6.173 24 C -0.115 4.115 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.109 4.109 28 H 0.277 0.723 29 H 0.394 0.606 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.341 0.659 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.410 0.590 36 H 0.159 0.841 37 H 0.185 0.815 38 H 0.254 0.746 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.057 -20.412 7.578 21.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.463 4.463 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.227 3.773 11 O -0.504 6.504 12 C -0.068 4.068 13 N -0.284 5.284 14 C 0.015 3.985 15 C -0.032 4.032 16 N -0.358 5.358 17 C 0.388 3.612 18 O -0.439 6.439 19 C -0.166 4.166 20 C -0.146 4.146 21 C -0.252 4.252 22 C -0.060 4.060 23 O -0.068 6.068 24 C -0.153 4.153 25 C -0.153 4.153 26 C -0.153 4.153 27 C -0.147 4.147 28 H 0.087 0.913 29 H 0.227 0.773 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.160 0.840 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.247 0.753 36 H 0.177 0.823 37 H 0.202 0.798 38 H 0.270 0.730 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.105 0.895 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.218 -20.254 6.562 21.406 hybrid contribution -0.449 1.217 1.107 1.705 sum 1.769 -19.037 7.669 20.600 Atomic orbital electron populations 1.69688 1.06947 1.29288 1.50364 1.26065 0.96515 1.02495 0.96232 0.84917 0.77888 0.76760 0.78709 1.19543 1.19608 1.19612 1.19677 0.92715 0.83956 1.49944 0.90171 1.41946 1.09216 1.04840 1.65142 1.20780 0.88273 0.85966 0.82254 1.90483 1.15541 1.87916 1.56424 1.21507 0.94247 0.88725 1.02333 1.60359 1.21734 1.00233 1.46096 1.22050 0.92790 0.89495 0.94183 1.22357 0.96328 1.02966 0.81569 1.45799 1.11137 1.73318 1.05529 1.16758 0.85860 0.76301 0.82289 1.90851 1.13770 1.52554 1.86730 1.21886 0.81875 1.17026 0.95839 1.22272 1.02061 0.99380 0.90877 1.22232 0.91281 1.09398 1.02324 1.25405 1.02634 0.99332 0.78654 1.84067 1.23922 1.70236 1.28619 1.22253 0.99723 0.99942 0.93410 1.22304 0.96281 0.97346 0.99360 1.22393 0.97181 1.01578 0.94151 1.22449 0.97851 0.95931 0.98473 0.91330 0.77281 0.87828 0.93076 0.83972 0.92051 0.89477 0.75348 0.82291 0.79755 0.73039 0.91846 0.90368 0.90068 0.91400 0.89997 0.92543 0.89466 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.96 13.05 21.66 0.28 -50.68 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 3 Si 0.99 43.54 29.55 68.60 2.03 45.56 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.33 -19.28 9.68 84.04 0.81 -18.47 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.57 -30.34 5.29 -307.00 -1.62 -31.97 16 10 C 0.44 21.37 7.83 87.66 0.69 22.06 16 11 O -0.62 -34.31 15.90 -3.06 -0.05 -34.36 16 12 C 0.06 2.28 5.28 85.55 0.45 2.74 16 13 N -0.65 -19.74 5.51 -470.53 -2.59 -22.33 16 14 C 0.11 2.36 0.55 4.25 0.00 2.36 16 15 C 0.09 2.15 3.68 86.38 0.32 2.47 16 16 N -0.71 -17.08 5.16 -467.10 -2.41 -19.49 16 17 C 0.60 17.27 7.79 86.44 0.67 17.94 16 18 O -0.56 -19.38 16.86 -4.33 -0.07 -19.45 16 19 C -0.11 -2.93 7.13 24.07 0.17 -2.76 16 20 C -0.13 -2.82 10.62 22.39 0.24 -2.58 16 21 C -0.23 -3.72 10.87 22.07 0.24 -3.48 16 22 C 0.01 0.13 12.08 67.10 0.81 0.94 16 23 O -0.17 -3.75 10.40 -5.04 -0.05 -3.80 16 24 C -0.11 -2.41 5.54 31.32 0.17 -2.24 16 25 C -0.12 -1.94 6.83 31.67 0.22 -1.72 16 26 C -0.12 -2.02 6.91 31.88 0.22 -1.80 16 27 C -0.11 -1.97 5.47 31.67 0.17 -1.79 16 28 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.39 20.10 7.90 -92.71 -0.73 19.37 16 30 H 0.10 3.40 6.52 -2.38 -0.02 3.38 16 31 H 0.05 1.78 6.67 -2.39 -0.02 1.76 16 32 H 0.34 10.63 7.35 -89.70 -0.66 9.97 16 33 H 0.06 1.66 6.65 -2.39 -0.02 1.64 16 34 H 0.09 1.82 8.10 -2.39 -0.02 1.80 16 35 H 0.41 8.95 6.95 -92.71 -0.64 8.30 16 36 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 37 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.25 1.17 8.06 -2.91 -0.02 1.14 16 39 H 0.06 1.62 6.78 -2.39 -0.02 1.60 16 40 H 0.08 1.45 7.67 -2.39 -0.02 1.43 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.09 1.31 7.83 -2.39 -0.02 1.29 16 46 H 0.07 1.31 7.87 -2.39 -0.02 1.30 16 Total: -1.00 -74.65 381.29 0.18 -74.47 By element: Atomic # 1 Polarization: 49.62 SS G_CDS: -0.99 Total: 48.63 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 5.66 Total: 13.40 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -6.34 Total: -124.46 kcal Atomic # 8 Polarization: -57.44 SS G_CDS: -0.17 Total: -57.61 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -74.65 0.18 -74.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715296450.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.060 kcal (2) G-P(sol) polarization free energy of solvation -74.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds