Wall clock time and date at job start Tue Mar 31 2020 18:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99948 * 2 1 4 4 H 1.48501 * 109.47214 * 240.00024 * 3 2 1 5 5 H 1.48505 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47258 * 119.99716 * 3 2 1 7 7 C 1.38952 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00054 * 180.02562 * 7 2 1 9 9 N 1.37092 * 119.99714 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99635 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00269 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99715 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46656 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99573 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47020 * 179.97438 * 14 13 12 16 16 H 1.09001 * 109.47450 * 295.00375 * 15 14 13 17 17 N 1.46504 * 109.46948 * 55.00202 * 15 14 13 18 18 C 1.34780 * 119.99923 * 205.00055 * 17 15 14 19 19 O 1.21280 * 119.99852 * 0.02562 * 18 17 15 20 20 C 1.50693 * 120.00131 * 179.97438 * 18 17 15 21 21 C 1.50702 * 109.47443 * 179.97438 * 20 18 17 22 22 C 1.34517 * 125.78895 * 89.99840 * 21 20 18 23 23 C 1.41380 * 106.84086 * 180.02562 * 22 21 20 24 24 C 1.34513 * 106.84089 * 359.97438 * 23 22 21 25 25 O 1.34304 * 108.42257 * 359.74103 * 24 23 22 26 26 C 1.52995 * 109.47327 * 174.99789 * 15 14 13 27 27 C 1.52995 * 117.50187 * 248.74867 * 26 15 14 28 28 C 1.53000 * 117.50268 * 180.08944 * 26 15 14 29 29 H 0.96997 * 119.99955 * 0.02562 * 1 2 3 30 30 H 0.96993 * 120.00778 * 0.02562 * 9 7 2 31 31 H 1.08990 * 109.47142 * 59.99633 * 12 10 9 32 32 H 1.09004 * 109.46726 * 299.99530 * 12 10 9 33 33 H 1.00896 * 111.00219 * 303.95295 * 13 12 10 34 34 H 1.09002 * 109.46991 * 299.99841 * 14 13 12 35 35 H 1.09000 * 109.47202 * 60.00133 * 14 13 12 36 36 H 0.96996 * 120.00459 * 24.99999 * 17 15 14 37 37 H 1.09007 * 109.47261 * 299.99577 * 20 18 17 38 38 H 1.08997 * 109.47120 * 59.99837 * 20 18 17 39 39 H 1.08004 * 126.57884 * 359.96711 * 22 21 20 40 40 H 1.07997 * 126.57961 * 179.97438 * 23 22 21 41 41 H 1.08003 * 125.79314 * 179.97438 * 24 23 22 42 42 H 1.09006 * 115.54819 * 34.41957 * 26 15 14 43 43 H 1.08998 * 117.50115 * 359.97438 * 27 26 15 44 44 H 1.09004 * 117.50253 * 145.01676 * 27 26 15 45 45 H 1.09002 * 117.49881 * 214.98572 * 28 26 15 46 46 H 1.09004 * 117.49593 * 359.97419 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9975 -3.5578 0.0026 11 8 3.2104 -3.5578 0.0022 12 6 1.2439 -4.8630 0.0032 13 7 2.1986 -5.9795 0.0037 14 6 1.4983 -7.2708 0.0049 15 6 2.5233 -8.4068 0.0048 16 1 3.0885 -8.3861 -0.9270 17 7 3.4394 -8.2380 1.1355 18 6 4.6784 -8.7660 1.0836 19 8 5.0350 -9.3803 0.1006 20 6 5.6210 -8.5919 2.2464 21 6 6.9301 -9.2718 1.9381 22 6 7.9890 -8.7028 1.3344 23 6 8.9924 -9.6950 1.2466 24 6 8.4868 -10.8108 1.8024 25 8 7.2396 -10.5469 2.2249 26 6 1.7982 -9.7480 0.1318 27 6 1.9781 -10.5277 1.4358 28 6 2.6552 -11.0153 0.1525 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3907 0.0016 31 1 0.6176 -4.9213 -0.8868 32 1 0.6170 -4.9201 0.8931 33 1 2.8335 -5.9127 -0.7776 34 1 0.8738 -7.3446 0.8952 35 1 0.8732 -7.3460 -0.8848 36 1 3.1543 -7.7464 1.9215 37 1 5.7945 -7.5295 2.4176 38 1 5.1823 -9.0370 3.1394 39 1 8.0589 -7.6839 0.9832 40 1 9.9760 -9.5793 0.8159 41 1 8.9985 -11.7572 1.8966 42 1 0.8266 -9.8055 -0.3591 43 1 2.6134 -10.0854 2.2031 44 1 1.1250 -11.0984 1.8028 45 1 2.2473 -11.9066 -0.3243 46 1 3.7356 -10.8935 0.0753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716624755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:02 Heat of formation + Delta-G solvation = -24.960340 kcal Electronic energy + Delta-G solvation = -28321.041921 eV Core-core repulsion = 24213.505826 eV Total energy + Delta-G solvation = -4107.536096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.63795 -40.28256 -38.33209 -37.47484 -35.53805 -33.98734 -33.54400 -33.20434 -32.18335 -31.25372 -29.68004 -27.23194 -26.18778 -24.17015 -22.64329 -22.13750 -21.84295 -21.64838 -20.31291 -20.02861 -19.26070 -17.94383 -17.56517 -17.30643 -16.70194 -16.42245 -15.92064 -15.63819 -15.16597 -14.91418 -14.72380 -14.56877 -14.28845 -13.97305 -13.65837 -13.40093 -13.38529 -12.97525 -12.88875 -12.77249 -12.71841 -12.16045 -11.96443 -11.87160 -11.67352 -11.56520 -11.52178 -11.36521 -11.03809 -10.50238 -10.46214 -10.24160 -10.08759 -9.97941 -9.88064 -9.52567 -9.00885 -8.55660 -8.50668 -8.13990 -7.99002 -6.44257 -3.85202 1.61086 2.51614 2.56406 2.82381 3.18300 3.24240 3.24414 3.28548 3.71154 3.87699 4.01945 4.23383 4.43210 4.69310 4.75672 4.82099 4.85933 4.87733 4.95727 5.04027 5.08941 5.16356 5.21243 5.22702 5.25134 5.41001 5.54657 5.58523 5.72471 5.75077 5.81964 5.85575 5.86322 5.92483 5.99025 6.01857 6.22001 6.23941 6.42248 6.46327 7.04189 7.10300 7.48616 7.52522 7.56018 8.03213 8.19578 8.58314 9.15164 9.51355 10.02654 10.73328 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.002395 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.412145 B =11687.238268 C =13604.528690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.667 5.667 14 C 0.052 3.948 15 C 0.181 3.819 16 H 0.090 0.910 17 N -0.704 5.704 18 C 0.518 3.482 19 O -0.532 6.532 20 C -0.064 4.064 21 C 0.008 3.992 22 C -0.195 4.195 23 C -0.212 4.212 24 C -0.043 4.043 25 O -0.174 6.174 26 C -0.168 4.168 27 C -0.175 4.175 28 C -0.184 4.184 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.351 0.649 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.408 0.592 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.200 0.800 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.353 -21.607 4.780 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.299 5.299 14 C -0.079 4.079 15 C 0.076 3.924 16 H 0.108 0.892 17 N -0.355 5.355 18 C 0.304 3.696 19 O -0.409 6.409 20 C -0.103 4.103 21 C -0.043 4.043 22 C -0.214 4.214 23 C -0.231 4.231 24 C -0.111 4.111 25 O -0.070 6.070 26 C -0.188 4.188 27 C -0.212 4.212 28 C -0.221 4.221 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.170 0.830 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.243 0.757 37 H 0.146 0.854 38 H 0.127 0.873 39 H 0.166 0.834 40 H 0.164 0.836 41 H 0.217 0.783 42 H 0.127 0.873 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.167 -22.039 4.888 23.402 hybrid contribution -0.637 1.184 -0.703 1.517 sum 5.530 -20.855 4.185 21.978 Atomic orbital electron populations 1.69601 1.05935 1.28297 1.50473 1.25264 0.95638 0.99738 0.97275 0.85919 0.78772 0.80445 0.79097 1.19910 1.20970 1.19863 1.19647 0.93331 0.82238 1.47747 0.87986 1.41858 1.09194 1.04615 1.64309 1.19798 0.88390 0.84704 0.84586 1.90528 1.13727 1.87045 1.55422 1.21674 0.94310 0.90948 1.01251 1.60055 1.18676 0.99627 1.51553 1.22236 0.95197 0.88776 1.01646 1.20419 0.89691 0.91669 0.90638 0.89195 1.45762 1.13132 1.55853 1.20733 1.20280 0.82130 0.78801 0.88417 1.90669 1.75822 1.40908 1.33460 1.20112 0.89259 1.02418 0.98530 1.21472 0.96628 0.82573 1.03588 1.21589 0.93617 1.01534 1.04677 1.21807 1.01458 0.93567 1.06289 1.23943 0.83602 1.00700 1.02827 1.83969 1.30542 1.28447 1.64064 1.22691 1.00835 0.92564 1.02661 1.22902 1.03124 1.03672 0.91482 1.23345 1.01364 0.96707 1.00681 0.91800 0.77471 0.93838 0.89565 0.82968 0.90247 0.93853 0.75696 0.85405 0.87281 0.83422 0.83567 0.78287 0.87287 0.88886 0.89315 0.89575 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 9 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 10 C 0.44 10.00 7.82 -10.98 -0.09 9.91 16 11 O -0.58 -15.35 15.78 5.55 0.09 -15.26 16 12 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 13 N -0.67 -9.65 5.85 -115.05 -0.67 -10.32 16 14 C 0.05 0.55 5.23 -3.82 -0.02 0.53 16 15 C 0.18 1.94 2.67 -67.93 -0.18 1.76 16 16 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 17 N -0.70 -7.26 3.34 -53.81 -0.18 -7.44 16 18 C 0.52 6.15 6.66 -10.99 -0.07 6.08 16 19 O -0.53 -8.21 13.06 5.56 0.07 -8.13 16 20 C -0.06 -0.61 6.23 -29.04 -0.18 -0.79 16 21 C 0.01 0.09 5.81 -35.62 -0.21 -0.11 16 22 C -0.19 -2.35 10.81 -39.70 -0.43 -2.78 16 23 C -0.21 -2.25 10.91 -39.70 -0.43 -2.69 16 24 C -0.04 -0.43 12.09 29.42 0.36 -0.07 16 25 O -0.17 -2.11 10.65 5.70 0.06 -2.04 16 26 C -0.17 -1.62 5.70 -90.62 -0.52 -2.14 16 27 C -0.17 -1.61 9.74 -26.70 -0.26 -1.87 16 28 C -0.18 -1.98 9.82 -26.70 -0.26 -2.24 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.35 5.63 8.43 -39.29 -0.33 5.30 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.41 3.68 8.60 -40.82 -0.35 3.33 16 37 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.15 1.67 8.06 -52.48 -0.42 1.24 16 40 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.20 1.16 8.06 -52.48 -0.42 0.74 16 42 H 0.11 0.93 8.11 -51.93 -0.42 0.51 16 43 H 0.09 0.85 6.67 -51.93 -0.35 0.50 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.12 1.57 5.02 -51.93 -0.26 1.31 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -33.68 389.83 -8.27 -41.94 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: -6.59 Total: 18.54 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.57 Total: -1.50 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.19 Total: -55.24 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: 0.22 Total: -25.44 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.68 -8.27 -41.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716624755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.984 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds