Wall clock time and date at job start Tue Mar 31 2020 18:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99948 * 2 1 4 4 H 1.48501 * 109.47214 * 240.00024 * 3 2 1 5 5 H 1.48505 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47258 * 119.99716 * 3 2 1 7 7 C 1.38952 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00054 * 180.02562 * 7 2 1 9 9 N 1.37092 * 119.99714 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99635 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00269 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99715 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46656 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99573 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47020 * 179.97438 * 14 13 12 16 16 H 1.09001 * 109.47450 * 295.00375 * 15 14 13 17 17 N 1.46504 * 109.46948 * 55.00202 * 15 14 13 18 18 C 1.34780 * 119.99923 * 205.00055 * 17 15 14 19 19 O 1.21280 * 119.99852 * 0.02562 * 18 17 15 20 20 C 1.50693 * 120.00131 * 179.97438 * 18 17 15 21 21 C 1.50702 * 109.47443 * 179.97438 * 20 18 17 22 22 C 1.34517 * 125.78895 * 89.99840 * 21 20 18 23 23 C 1.41380 * 106.84086 * 180.02562 * 22 21 20 24 24 C 1.34513 * 106.84089 * 359.97438 * 23 22 21 25 25 O 1.34304 * 108.42257 * 359.74103 * 24 23 22 26 26 C 1.52995 * 109.47327 * 174.99789 * 15 14 13 27 27 C 1.52995 * 117.50187 * 248.74867 * 26 15 14 28 28 C 1.53000 * 117.50268 * 180.08944 * 26 15 14 29 29 H 0.96997 * 119.99955 * 0.02562 * 1 2 3 30 30 H 0.96993 * 120.00778 * 0.02562 * 9 7 2 31 31 H 1.08990 * 109.47142 * 59.99633 * 12 10 9 32 32 H 1.09004 * 109.46726 * 299.99530 * 12 10 9 33 33 H 1.00896 * 111.00219 * 303.95295 * 13 12 10 34 34 H 1.09002 * 109.46991 * 299.99841 * 14 13 12 35 35 H 1.09000 * 109.47202 * 60.00133 * 14 13 12 36 36 H 0.96996 * 120.00459 * 24.99999 * 17 15 14 37 37 H 1.09007 * 109.47261 * 299.99577 * 20 18 17 38 38 H 1.08997 * 109.47120 * 59.99837 * 20 18 17 39 39 H 1.08004 * 126.57884 * 359.96711 * 22 21 20 40 40 H 1.07997 * 126.57961 * 179.97438 * 23 22 21 41 41 H 1.08003 * 125.79314 * 179.97438 * 24 23 22 42 42 H 1.09006 * 115.54819 * 34.41957 * 26 15 14 43 43 H 1.08998 * 117.50115 * 359.97438 * 27 26 15 44 44 H 1.09004 * 117.50253 * 145.01676 * 27 26 15 45 45 H 1.09002 * 117.49881 * 214.98572 * 28 26 15 46 46 H 1.09004 * 117.49593 * 359.97419 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9975 -3.5578 0.0026 11 8 3.2104 -3.5578 0.0022 12 6 1.2439 -4.8630 0.0032 13 7 2.1986 -5.9795 0.0037 14 6 1.4983 -7.2708 0.0049 15 6 2.5233 -8.4068 0.0048 16 1 3.0885 -8.3861 -0.9270 17 7 3.4394 -8.2380 1.1355 18 6 4.6784 -8.7660 1.0836 19 8 5.0350 -9.3803 0.1006 20 6 5.6210 -8.5919 2.2464 21 6 6.9301 -9.2718 1.9381 22 6 7.9890 -8.7028 1.3344 23 6 8.9924 -9.6950 1.2466 24 6 8.4868 -10.8108 1.8024 25 8 7.2396 -10.5469 2.2249 26 6 1.7982 -9.7480 0.1318 27 6 1.9781 -10.5277 1.4358 28 6 2.6552 -11.0153 0.1525 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3907 0.0016 31 1 0.6176 -4.9213 -0.8868 32 1 0.6170 -4.9201 0.8931 33 1 2.8335 -5.9127 -0.7776 34 1 0.8738 -7.3446 0.8952 35 1 0.8732 -7.3460 -0.8848 36 1 3.1543 -7.7464 1.9215 37 1 5.7945 -7.5295 2.4176 38 1 5.1823 -9.0370 3.1394 39 1 8.0589 -7.6839 0.9832 40 1 9.9760 -9.5793 0.8159 41 1 8.9985 -11.7572 1.8966 42 1 0.8266 -9.8055 -0.3591 43 1 2.6134 -10.0854 2.2031 44 1 1.1250 -11.0984 1.8028 45 1 2.2473 -11.9066 -0.3243 46 1 3.7356 -10.8935 0.0753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716624755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:01 Heat of formation + Delta-G solvation = -49.218574 kcal Electronic energy + Delta-G solvation = -28322.093837 eV Core-core repulsion = 24213.505826 eV Total energy + Delta-G solvation = -4108.588012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.47300 -41.19259 -40.09338 -38.42581 -36.68401 -35.82816 -34.60504 -34.06821 -33.25290 -32.99374 -30.74277 -28.28347 -27.51685 -25.79396 -23.51966 -23.03186 -22.69673 -22.50007 -21.25942 -21.04573 -20.76605 -19.88659 -18.46096 -18.18084 -17.89166 -17.43281 -17.17489 -16.70482 -16.42494 -16.30879 -15.94910 -15.70930 -15.48500 -15.17459 -14.96781 -14.64786 -14.50844 -14.15387 -13.74982 -13.66257 -13.60419 -13.52941 -13.39401 -13.05231 -12.81158 -12.74936 -12.65105 -12.52539 -12.41849 -12.18441 -12.12232 -11.48615 -11.30382 -10.95682 -10.84348 -10.77946 -10.32278 -9.99692 -9.90575 -9.38871 -9.32144 -8.45450 -5.93728 0.77428 1.40300 1.42406 1.52809 1.64895 1.68967 2.03879 2.08448 2.29596 2.41326 2.82405 3.02585 3.22325 3.51292 3.65192 3.80826 3.94237 4.03946 4.10756 4.14302 4.16682 4.29524 4.31774 4.37145 4.41847 4.49598 4.50669 4.59813 4.67458 4.73994 4.85537 4.93188 4.98626 5.02228 5.05041 5.22537 5.26455 5.39004 5.41976 5.59316 5.61038 5.88140 6.10223 6.20474 6.33200 6.62085 6.63740 7.14544 7.32453 7.59048 8.14553 8.71603 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.002395 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.412145 B =11687.238268 C =13604.528690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.066 3.934 13 N -0.675 5.675 14 C 0.059 3.941 15 C 0.184 3.816 16 H 0.063 0.937 17 N -0.695 5.695 18 C 0.515 3.485 19 O -0.572 6.572 20 C -0.060 4.060 21 C -0.008 4.008 22 C -0.220 4.220 23 C -0.230 4.230 24 C -0.041 4.041 25 O -0.188 6.188 26 C -0.162 4.162 27 C -0.161 4.161 28 C -0.201 4.201 29 H 0.277 0.723 30 H 0.397 0.603 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.339 0.661 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.416 0.584 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.165 0.835 41 H 0.238 0.762 42 H 0.127 0.873 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 -22.305 5.725 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.066 4.066 13 N -0.307 5.307 14 C -0.070 4.070 15 C 0.079 3.921 16 H 0.081 0.919 17 N -0.346 5.346 18 C 0.302 3.698 19 O -0.452 6.452 20 C -0.099 4.099 21 C -0.058 4.058 22 C -0.239 4.239 23 C -0.249 4.249 24 C -0.108 4.108 25 O -0.085 6.085 26 C -0.181 4.181 27 C -0.198 4.198 28 C -0.238 4.238 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.083 0.917 32 H 0.129 0.871 33 H 0.157 0.843 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.253 0.747 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.164 0.836 40 H 0.182 0.818 41 H 0.254 0.746 42 H 0.145 0.855 43 H 0.112 0.888 44 H 0.124 0.876 45 H 0.112 0.888 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.887 -22.742 5.856 23.987 hybrid contribution -0.201 1.319 -1.025 1.682 sum 4.686 -21.423 4.832 22.456 Atomic orbital electron populations 1.69657 1.06741 1.29298 1.50383 1.26000 0.96530 1.02317 0.96395 0.85031 0.77797 0.76873 0.78909 1.19887 1.19542 1.19677 1.19600 0.92643 0.84113 1.49886 0.90436 1.41931 1.09340 1.04715 1.65175 1.20950 0.88273 0.86232 0.82039 1.90502 1.15920 1.87977 1.56562 1.21538 0.93886 0.87782 1.03384 1.60055 1.18743 1.00681 1.51207 1.22277 0.94981 0.86434 1.03279 1.20336 0.89506 0.92622 0.89684 0.91883 1.45719 1.12708 1.55313 1.20861 1.20660 0.82600 0.78097 0.88436 1.90657 1.76621 1.42769 1.35139 1.20201 0.88064 1.03194 0.98490 1.21843 0.97425 0.82734 1.03836 1.21848 0.94700 1.02047 1.05350 1.22134 1.02195 0.93591 1.06959 1.24733 0.82800 1.01903 1.01363 1.83965 1.31575 1.28521 1.64417 1.22682 1.00966 0.91201 1.03278 1.22972 1.03121 1.02866 0.90844 1.23253 1.00022 0.97787 1.02752 0.91336 0.76946 0.91687 0.87076 0.84287 0.88218 0.92338 0.74690 0.84180 0.84515 0.83649 0.81769 0.74556 0.85479 0.88844 0.87569 0.88797 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.86 13.05 21.66 0.28 -48.58 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 42.47 29.55 68.60 2.03 44.50 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.33 -18.58 9.68 84.04 0.81 -17.77 16 8 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 9 N -0.57 -28.54 5.29 -306.97 -1.62 -30.16 16 10 C 0.44 19.82 7.82 87.66 0.69 20.50 16 11 O -0.62 -33.38 15.78 -3.07 -0.05 -33.42 16 12 C 0.07 2.03 6.17 85.56 0.53 2.56 16 13 N -0.68 -18.49 5.85 -517.91 -3.03 -21.51 16 14 C 0.06 1.11 5.23 86.30 0.45 1.56 16 15 C 0.18 3.73 2.67 44.99 0.12 3.85 16 16 H 0.06 1.65 7.58 -2.39 -0.02 1.64 16 17 N -0.69 -13.72 3.34 -442.54 -1.48 -15.20 16 18 C 0.51 12.29 6.66 87.65 0.58 12.87 16 19 O -0.57 -18.35 13.06 -3.03 -0.04 -18.39 16 20 C -0.06 -1.13 6.23 29.10 0.18 -0.95 16 21 C -0.01 -0.20 5.81 24.83 0.14 -0.05 16 22 C -0.22 -5.49 10.81 22.19 0.24 -5.25 16 23 C -0.23 -4.87 10.91 22.19 0.24 -4.62 16 24 C -0.04 -0.78 12.09 66.97 0.81 0.03 16 25 O -0.19 -4.51 10.65 -2.51 -0.03 -4.54 16 26 C -0.16 -2.81 5.70 -10.80 -0.06 -2.87 16 27 C -0.16 -2.60 9.74 30.61 0.30 -2.30 16 28 C -0.20 -4.19 9.82 30.62 0.30 -3.89 16 29 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 30 H 0.40 18.63 7.90 -92.71 -0.73 17.90 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 2.91 8.14 -2.38 -0.02 2.89 16 33 H 0.34 10.77 8.43 -89.70 -0.76 10.01 16 34 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.42 6.79 8.60 -92.71 -0.80 6.00 16 37 H 0.14 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 40 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.24 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.13 1.78 8.11 -2.38 -0.02 1.76 16 43 H 0.09 1.50 6.67 -2.39 -0.02 1.48 16 44 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.09 2.46 5.02 -2.38 -0.01 2.45 16 Total: -1.00 -75.03 389.83 0.62 -74.41 By element: Atomic # 1 Polarization: 50.67 SS G_CDS: -1.25 Total: 49.42 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 5.80 Total: 3.48 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -5.85 Total: -115.45 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -0.11 Total: -56.35 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -75.03 0.62 -74.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716624755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.190 kcal (2) G-P(sol) polarization free energy of solvation -75.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds