Wall clock time and date at job start Tue Mar 31 2020 18:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00201 * 2 1 4 4 H 1.48490 * 109.47371 * 270.00491 * 3 2 1 5 5 H 1.48506 * 109.46818 * 30.00375 * 3 2 1 6 6 H 1.48497 * 109.47142 * 150.00148 * 3 2 1 7 7 C 1.38953 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99319 * 359.97438 * 7 2 1 9 9 N 1.37089 * 120.00362 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00242 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99854 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00108 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47042 * 180.02562 * 12 10 9 14 14 C 1.46899 * 110.99945 * 179.97438 * 13 12 10 15 15 C 1.53010 * 109.47035 * 179.97438 * 14 13 12 16 16 H 1.08997 * 109.46815 * 65.00905 * 15 14 13 17 17 N 1.46496 * 109.47076 * 304.99985 * 15 14 13 18 18 C 1.34774 * 119.99544 * 155.00017 * 17 15 14 19 19 O 1.21279 * 120.00472 * 0.02562 * 18 17 15 20 20 C 1.50706 * 120.00020 * 180.02562 * 18 17 15 21 21 C 1.50698 * 109.47294 * 180.02562 * 20 18 17 22 22 C 1.34512 * 125.79319 * 89.99543 * 21 20 18 23 23 C 1.41380 * 106.84217 * 179.97438 * 22 21 20 24 24 C 1.34522 * 106.83858 * 0.02562 * 23 22 21 25 25 O 1.34296 * 108.41991 * 359.72958 * 24 23 22 26 26 C 1.53003 * 109.46752 * 184.99927 * 15 14 13 27 27 C 1.52999 * 117.49917 * 248.74612 * 26 15 14 28 28 C 1.52998 * 117.49620 * 180.08747 * 26 15 14 29 29 H 0.97001 * 119.99710 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99725 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47298 * 60.00333 * 12 10 9 32 32 H 1.08994 * 109.47214 * 300.00157 * 12 10 9 33 33 H 1.00904 * 111.00444 * 303.95283 * 13 12 10 34 34 H 1.09005 * 109.47535 * 60.00445 * 14 13 12 35 35 H 1.08994 * 109.47580 * 300.00251 * 14 13 12 36 36 H 0.96994 * 120.00700 * 335.00136 * 17 15 14 37 37 H 1.09001 * 109.46953 * 299.99667 * 20 18 17 38 38 H 1.09000 * 109.47318 * 59.99264 * 20 18 17 39 39 H 1.07995 * 126.58079 * 0.03730 * 22 21 20 40 40 H 1.07994 * 126.58088 * 179.97438 * 23 22 21 41 41 H 1.07998 * 125.78711 * 180.02562 * 24 23 22 42 42 H 1.09005 * 115.54981 * 34.42362 * 26 15 14 43 43 H 1.09000 * 117.50006 * 0.02562 * 27 26 15 44 44 H 1.09002 * 117.49525 * 145.02325 * 27 26 15 45 45 H 1.09002 * 117.49935 * 214.98181 * 28 26 15 46 46 H 1.09010 * 117.50105 * 0.02562 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3706 -0.0022 13 7 6.0503 -3.7556 -0.0026 14 6 7.5188 -3.7948 -0.0044 15 6 7.9901 -5.2505 -0.0041 16 1 7.6878 -5.7304 -0.9349 17 7 7.3882 -5.9584 1.1285 18 6 7.2259 -7.2954 1.0780 19 8 7.5785 -7.9125 0.0954 20 6 6.6061 -8.0237 2.2429 21 6 6.5399 -9.4976 1.9360 22 6 7.4940 -10.4033 2.2166 23 6 7.0189 -11.6539 1.7594 24 6 5.8029 -11.4375 1.2262 25 8 5.5156 -10.1307 1.3410 26 6 9.5145 -5.2929 0.1198 27 6 10.3092 -5.7708 -1.0971 28 6 10.1839 -6.6685 0.1364 29 1 -0.4850 0.8401 0.0004 30 1 3.8648 -0.3633 -0.0014 31 1 5.9247 -1.8564 0.8873 32 1 5.9233 -1.8571 -0.8927 33 1 5.6754 -4.2719 0.7791 34 1 7.8968 -3.2907 0.8852 35 1 7.8947 -3.2910 -0.8948 36 1 7.1064 -5.4650 1.9146 37 1 7.2128 -7.8655 3.1345 38 1 5.5997 -7.6425 2.4159 39 1 8.4409 -10.2120 2.6995 40 1 7.5337 -12.6010 1.8248 41 1 5.1640 -12.1883 0.7853 42 1 9.9581 -4.5098 0.7348 43 1 9.7460 -6.0547 -1.9861 44 1 11.2758 -5.3025 -1.2825 45 1 11.0682 -6.7905 0.7619 46 1 9.5383 -7.5434 0.0586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716624756.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:05 Heat of formation + Delta-G solvation = -19.775860 kcal Electronic energy + Delta-G solvation = -28250.520501 eV Core-core repulsion = 24143.209221 eV Total energy + Delta-G solvation = -4107.311280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.67008 -40.23282 -38.52519 -37.60661 -35.76748 -34.11178 -33.67187 -33.27441 -32.24744 -31.68428 -29.70816 -27.32720 -26.32338 -24.01033 -22.58112 -22.21842 -21.87367 -21.61803 -20.50667 -20.35268 -19.42058 -18.43527 -17.62283 -17.44957 -16.47914 -16.22842 -15.99224 -15.71362 -15.53314 -15.11311 -14.92318 -14.66121 -14.41856 -14.01240 -13.73947 -13.50932 -13.27535 -12.95077 -12.93659 -12.82719 -12.67171 -12.29959 -12.11168 -11.95793 -11.89938 -11.86852 -11.55686 -11.47395 -11.17482 -10.62121 -10.51559 -10.37377 -10.03937 -9.99741 -9.95227 -9.59853 -9.16286 -8.63277 -8.58684 -8.24156 -8.19069 -6.33185 -3.84795 1.58104 2.45730 2.47474 2.77531 2.99687 3.04965 3.08845 3.13096 3.70295 3.74579 3.94326 4.08060 4.35819 4.57983 4.64841 4.73015 4.81645 4.83784 4.88700 4.91001 4.98757 5.07844 5.09579 5.12905 5.18276 5.29523 5.50740 5.54849 5.57323 5.66216 5.70988 5.75297 5.76391 5.84339 5.90046 5.95944 6.03773 6.16533 6.34645 6.36986 6.97582 7.02425 7.30245 7.46907 7.55650 8.08136 8.12081 8.57191 8.92723 9.39900 9.79805 10.79885 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.002435 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.411670 B =11498.426300 C =13360.136422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.448 3.552 11 O -0.564 6.564 12 C 0.048 3.952 13 N -0.667 5.667 14 C 0.055 3.945 15 C 0.180 3.820 16 H 0.099 0.901 17 N -0.719 5.719 18 C 0.522 3.478 19 O -0.525 6.525 20 C -0.066 4.066 21 C 0.010 3.990 22 C -0.199 4.199 23 C -0.216 4.216 24 C -0.036 4.036 25 O -0.169 6.169 26 C -0.170 4.170 27 C -0.169 4.169 28 C -0.182 4.182 29 H 0.274 0.726 30 H 0.370 0.630 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.349 0.651 34 H 0.033 0.967 35 H 0.089 0.911 36 H 0.398 0.602 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.202 0.798 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.722 -13.371 6.151 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.234 3.766 11 O -0.445 6.445 12 C -0.085 4.085 13 N -0.300 5.300 14 C -0.075 4.075 15 C 0.075 3.925 16 H 0.117 0.883 17 N -0.370 5.370 18 C 0.308 3.692 19 O -0.401 6.401 20 C -0.105 4.105 21 C -0.041 4.041 22 C -0.218 4.218 23 C -0.235 4.235 24 C -0.104 4.104 25 O -0.064 6.064 26 C -0.190 4.190 27 C -0.207 4.207 28 C -0.219 4.219 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.169 0.831 34 H 0.051 0.949 35 H 0.107 0.893 36 H 0.232 0.768 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.218 0.782 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 21.011 -14.325 4.655 25.852 hybrid contribution 0.852 1.881 1.336 2.460 sum 21.863 -12.444 5.991 25.860 Atomic orbital electron populations 1.69623 1.05648 1.27515 1.49258 1.25049 0.95503 0.97996 0.97644 0.86662 0.79698 0.84024 0.78925 1.19579 1.20188 1.19560 1.19431 0.79226 0.96642 1.48117 0.86277 1.42201 1.07548 1.06140 1.67045 1.19693 0.88164 0.84597 0.84153 1.90577 1.69387 1.30912 1.53659 1.21722 0.95174 0.90183 1.01412 1.59976 1.05595 1.12831 1.51607 1.22237 0.88871 0.94742 1.01656 1.20578 0.89134 0.92032 0.90734 0.88272 1.45919 1.63420 1.07195 1.20485 1.20257 0.78293 0.82222 0.88419 1.90675 1.49312 1.66720 1.33353 1.20119 1.04818 0.87356 0.98230 1.21446 0.88053 0.93852 1.00760 1.21473 1.00613 0.92558 1.07200 1.21774 0.96968 0.99270 1.05537 1.24014 0.98694 0.83042 1.04675 1.84029 1.40372 1.20478 1.61563 1.22649 0.94041 0.99043 1.03287 1.22927 1.01185 1.03844 0.92729 1.23276 1.02648 0.95131 1.00819 0.91589 0.79698 0.93704 0.89306 0.83091 0.94868 0.89283 0.76753 0.85980 0.86555 0.83756 0.83597 0.78180 0.87911 0.88539 0.89017 0.89665 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.59 13.96 55.50 0.77 -24.82 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.11 27.74 -169.99 -4.71 14.39 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 7 C -0.31 -8.57 10.16 -14.94 -0.15 -8.72 16 8 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 9 N -0.59 -13.80 5.09 -10.96 -0.06 -13.86 16 10 C 0.45 9.94 7.82 -10.99 -0.09 9.86 16 11 O -0.56 -14.96 15.78 5.55 0.09 -14.87 16 12 C 0.05 0.75 6.17 -4.98 -0.03 0.72 16 13 N -0.67 -9.64 6.12 -115.06 -0.70 -10.34 16 14 C 0.05 0.57 5.28 -3.82 -0.02 0.55 16 15 C 0.18 1.88 2.58 -67.93 -0.18 1.71 16 16 H 0.10 1.34 7.34 -51.93 -0.38 0.96 16 17 N -0.72 -6.85 4.34 -53.80 -0.23 -7.08 16 18 C 0.52 5.93 7.16 -10.98 -0.08 5.85 16 19 O -0.52 -7.94 13.06 5.56 0.07 -7.87 16 20 C -0.07 -0.58 6.23 -29.03 -0.18 -0.76 16 21 C 0.01 0.11 5.81 -35.63 -0.21 -0.10 16 22 C -0.20 -2.11 10.81 -39.70 -0.43 -2.53 16 23 C -0.22 -2.15 10.91 -39.70 -0.43 -2.58 16 24 C -0.04 -0.37 12.09 29.42 0.36 -0.02 16 25 O -0.17 -2.19 10.65 5.72 0.06 -2.13 16 26 C -0.17 -1.55 5.36 -90.62 -0.49 -2.03 16 27 C -0.17 -1.57 10.18 -26.69 -0.27 -1.84 16 28 C -0.18 -1.81 9.73 -26.70 -0.26 -2.07 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.37 7.56 5.76 -40.82 -0.24 7.32 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.35 5.11 7.28 -39.29 -0.29 4.82 16 34 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.40 2.86 8.15 -40.82 -0.33 2.52 16 37 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.10 0.81 8.11 -51.93 -0.42 0.39 16 43 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.12 1.47 5.02 -51.92 -0.26 1.21 16 LS Contribution 387.97 15.07 5.85 5.85 Total: -1.00 -36.38 387.97 -7.96 -44.33 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -6.54 Total: 17.33 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.55 Total: -0.94 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.22 Total: -56.10 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: 0.22 Total: -24.87 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.39 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.38 -7.96 -44.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716624756.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.558 kcal (2) G-P(sol) polarization free energy of solvation -36.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds