Wall clock time and date at job start Tue Mar 31 2020 18:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00201 * 2 1 4 4 H 1.48490 * 109.47371 * 270.00491 * 3 2 1 5 5 H 1.48506 * 109.46818 * 30.00375 * 3 2 1 6 6 H 1.48497 * 109.47142 * 150.00148 * 3 2 1 7 7 C 1.38953 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99319 * 359.97438 * 7 2 1 9 9 N 1.37089 * 120.00362 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00242 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99854 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00108 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47042 * 180.02562 * 12 10 9 14 14 C 1.46899 * 110.99945 * 179.97438 * 13 12 10 15 15 C 1.53010 * 109.47035 * 179.97438 * 14 13 12 16 16 H 1.08997 * 109.46815 * 65.00905 * 15 14 13 17 17 N 1.46496 * 109.47076 * 304.99985 * 15 14 13 18 18 C 1.34774 * 119.99544 * 155.00017 * 17 15 14 19 19 O 1.21279 * 120.00472 * 0.02562 * 18 17 15 20 20 C 1.50706 * 120.00020 * 180.02562 * 18 17 15 21 21 C 1.50698 * 109.47294 * 180.02562 * 20 18 17 22 22 C 1.34512 * 125.79319 * 89.99543 * 21 20 18 23 23 C 1.41380 * 106.84217 * 179.97438 * 22 21 20 24 24 C 1.34522 * 106.83858 * 0.02562 * 23 22 21 25 25 O 1.34296 * 108.41991 * 359.72958 * 24 23 22 26 26 C 1.53003 * 109.46752 * 184.99927 * 15 14 13 27 27 C 1.52999 * 117.49917 * 248.74612 * 26 15 14 28 28 C 1.52998 * 117.49620 * 180.08747 * 26 15 14 29 29 H 0.97001 * 119.99710 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99725 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47298 * 60.00333 * 12 10 9 32 32 H 1.08994 * 109.47214 * 300.00157 * 12 10 9 33 33 H 1.00904 * 111.00444 * 303.95283 * 13 12 10 34 34 H 1.09005 * 109.47535 * 60.00445 * 14 13 12 35 35 H 1.08994 * 109.47580 * 300.00251 * 14 13 12 36 36 H 0.96994 * 120.00700 * 335.00136 * 17 15 14 37 37 H 1.09001 * 109.46953 * 299.99667 * 20 18 17 38 38 H 1.09000 * 109.47318 * 59.99264 * 20 18 17 39 39 H 1.07995 * 126.58079 * 0.03730 * 22 21 20 40 40 H 1.07994 * 126.58088 * 179.97438 * 23 22 21 41 41 H 1.07998 * 125.78711 * 180.02562 * 24 23 22 42 42 H 1.09005 * 115.54981 * 34.42362 * 26 15 14 43 43 H 1.09000 * 117.50006 * 0.02562 * 27 26 15 44 44 H 1.09002 * 117.49525 * 145.02325 * 27 26 15 45 45 H 1.09002 * 117.49935 * 214.98181 * 28 26 15 46 46 H 1.09010 * 117.50105 * 0.02562 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3706 -0.0022 13 7 6.0503 -3.7556 -0.0026 14 6 7.5188 -3.7948 -0.0044 15 6 7.9901 -5.2505 -0.0041 16 1 7.6878 -5.7304 -0.9349 17 7 7.3882 -5.9584 1.1285 18 6 7.2259 -7.2954 1.0780 19 8 7.5785 -7.9125 0.0954 20 6 6.6061 -8.0237 2.2429 21 6 6.5399 -9.4976 1.9360 22 6 7.4940 -10.4033 2.2166 23 6 7.0189 -11.6539 1.7594 24 6 5.8029 -11.4375 1.2262 25 8 5.5156 -10.1307 1.3410 26 6 9.5145 -5.2929 0.1198 27 6 10.3092 -5.7708 -1.0971 28 6 10.1839 -6.6685 0.1364 29 1 -0.4850 0.8401 0.0004 30 1 3.8648 -0.3633 -0.0014 31 1 5.9247 -1.8564 0.8873 32 1 5.9233 -1.8571 -0.8927 33 1 5.6754 -4.2719 0.7791 34 1 7.8968 -3.2907 0.8852 35 1 7.8947 -3.2910 -0.8948 36 1 7.1064 -5.4650 1.9146 37 1 7.2128 -7.8655 3.1345 38 1 5.5997 -7.6425 2.4159 39 1 8.4409 -10.2120 2.6995 40 1 7.5337 -12.6010 1.8248 41 1 5.1640 -12.1883 0.7853 42 1 9.9581 -4.5098 0.7348 43 1 9.7460 -6.0547 -1.9861 44 1 11.2758 -5.3025 -1.2825 45 1 11.0682 -6.7905 0.7619 46 1 9.5383 -7.5434 0.0586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716624756.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:04 Heat of formation + Delta-G solvation = -48.549513 kcal Electronic energy + Delta-G solvation = -28251.768220 eV Core-core repulsion = 24143.209221 eV Total energy + Delta-G solvation = -4108.558999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.48035 -41.10767 -40.25544 -38.50258 -36.81586 -35.92631 -34.77093 -34.09674 -33.73500 -33.01865 -30.72110 -28.38090 -27.55986 -25.62778 -23.41389 -23.06656 -22.67865 -22.44447 -21.38293 -21.25492 -21.11883 -20.27220 -18.53189 -18.28210 -17.74556 -17.28526 -17.00690 -16.86870 -16.58333 -16.52348 -15.91112 -15.71467 -15.47039 -15.29626 -14.98506 -14.67507 -14.52866 -14.41393 -14.01262 -13.72010 -13.69115 -13.54751 -13.29413 -12.97591 -12.89731 -12.81463 -12.70981 -12.47494 -12.39775 -12.23295 -11.96761 -11.50657 -11.28793 -11.13599 -10.88759 -10.78942 -10.44266 -10.24263 -9.99304 -9.37910 -9.30691 -8.40586 -6.01765 0.77213 1.30777 1.37296 1.45866 1.62421 1.68779 1.97032 2.03726 2.24158 2.32492 2.69584 3.03652 3.15962 3.34921 3.62540 3.80161 3.92490 4.01973 4.12204 4.15373 4.16771 4.17418 4.26586 4.32025 4.38646 4.44108 4.46797 4.51924 4.63435 4.78030 4.84411 4.91061 4.93994 5.01699 5.07188 5.22222 5.30347 5.38480 5.52525 5.54373 5.64131 5.89805 6.03243 6.22796 6.38191 6.54300 6.60527 6.89157 7.27562 7.40812 7.98040 8.77160 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.002435 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.411670 B =11498.426300 C =13360.136422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.227 1.227 7 C -0.329 4.329 8 H 0.053 0.947 9 N -0.590 5.590 10 C 0.446 3.554 11 O -0.616 6.616 12 C 0.063 3.937 13 N -0.693 5.693 14 C 0.062 3.938 15 C 0.182 3.818 16 H 0.060 0.940 17 N -0.708 5.708 18 C 0.517 3.483 19 O -0.569 6.569 20 C -0.061 4.061 21 C -0.016 4.016 22 C -0.207 4.207 23 C -0.225 4.225 24 C -0.051 4.051 25 O -0.200 6.200 26 C -0.156 4.156 27 C -0.171 4.171 28 C -0.189 4.189 29 H 0.279 0.721 30 H 0.391 0.609 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.345 0.655 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.412 0.588 37 H 0.160 0.840 38 H 0.122 0.878 39 H 0.162 0.838 40 H 0.169 0.831 41 H 0.229 0.771 42 H 0.129 0.871 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.518 -10.912 7.430 28.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.216 4.216 3 Si 0.787 3.213 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.150 1.150 7 C -0.458 4.458 8 H 0.071 0.929 9 N -0.232 5.232 10 C 0.234 3.766 11 O -0.501 6.501 12 C -0.069 4.069 13 N -0.326 5.326 14 C -0.067 4.067 15 C 0.077 3.923 16 H 0.078 0.922 17 N -0.360 5.360 18 C 0.305 3.695 19 O -0.448 6.448 20 C -0.100 4.100 21 C -0.066 4.066 22 C -0.226 4.226 23 C -0.244 4.244 24 C -0.118 4.118 25 O -0.097 6.097 26 C -0.175 4.175 27 C -0.208 4.208 28 C -0.226 4.226 29 H 0.088 0.912 30 H 0.226 0.774 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.164 0.836 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.249 0.751 37 H 0.178 0.822 38 H 0.140 0.860 39 H 0.180 0.820 40 H 0.187 0.813 41 H 0.246 0.754 42 H 0.147 0.853 43 H 0.097 0.903 44 H 0.131 0.869 45 H 0.119 0.881 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 24.845 -11.852 5.958 28.164 hybrid contribution -0.381 0.922 0.899 1.343 sum 24.464 -10.930 6.857 27.658 Atomic orbital electron populations 1.69814 1.08240 1.29253 1.50335 1.26162 0.96491 1.02860 0.96068 0.85339 0.79596 0.76516 0.79886 1.18355 1.20132 1.14992 1.18993 0.81632 0.94833 1.50350 0.92895 1.42020 1.05724 1.07675 1.67793 1.21082 0.91210 0.83233 0.81057 1.90560 1.71500 1.32896 1.55125 1.21642 0.89220 0.91573 1.04462 1.59930 1.08264 1.12358 1.52075 1.22271 0.86181 0.94575 1.03625 1.20461 0.90369 0.92011 0.89480 0.92175 1.45828 1.62727 1.06733 1.20716 1.20708 0.77707 0.82667 0.88457 1.90661 1.51297 1.67721 1.35148 1.20256 1.05602 0.85756 0.98427 1.21997 0.88214 0.95163 1.01266 1.21836 1.01048 0.92742 1.06943 1.22165 0.97013 1.00115 1.05135 1.24722 0.99614 0.82724 1.04693 1.84008 1.41545 1.21792 1.62348 1.22630 0.92713 0.99005 1.03200 1.22966 1.01991 1.03801 0.92053 1.23188 1.02971 0.94679 1.01805 0.91175 0.77378 0.89641 0.86733 0.83578 0.91477 0.88360 0.75092 0.82205 0.85995 0.81996 0.81324 0.75425 0.85272 0.90332 0.86949 0.88131 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.32 13.96 21.66 0.30 -56.02 16 2 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 3 Si 0.97 37.97 27.74 68.60 1.90 39.87 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.23 -7.27 6.52 99.48 0.65 -6.63 16 7 C -0.33 -19.11 10.16 84.04 0.85 -18.26 16 8 H 0.05 3.70 7.39 -2.91 -0.02 3.67 16 9 N -0.59 -27.09 5.09 -306.99 -1.56 -28.65 16 10 C 0.45 19.48 7.82 87.66 0.69 20.16 16 11 O -0.62 -33.82 15.78 -3.07 -0.05 -33.87 16 12 C 0.06 1.74 6.17 85.56 0.53 2.27 16 13 N -0.69 -18.45 6.12 -517.93 -3.17 -21.62 16 14 C 0.06 1.07 5.28 86.31 0.46 1.53 16 15 C 0.18 3.55 2.58 45.00 0.12 3.66 16 16 H 0.06 1.68 7.34 -2.39 -0.02 1.66 16 17 N -0.71 -12.66 4.34 -442.52 -1.92 -14.58 16 18 C 0.52 11.83 7.16 87.66 0.63 12.45 16 19 O -0.57 -18.09 13.06 -3.02 -0.04 -18.13 16 20 C -0.06 -1.06 6.23 29.10 0.18 -0.88 16 21 C -0.02 -0.38 5.81 24.83 0.14 -0.24 16 22 C -0.21 -4.32 10.81 22.19 0.24 -4.08 16 23 C -0.23 -4.41 10.91 22.19 0.24 -4.16 16 24 C -0.05 -1.05 12.09 66.97 0.81 -0.24 16 25 O -0.20 -5.43 10.65 -2.45 -0.03 -5.46 16 26 C -0.16 -2.44 5.36 -10.79 -0.06 -2.50 16 27 C -0.17 -2.92 10.18 30.62 0.31 -2.61 16 28 C -0.19 -3.55 9.73 30.62 0.30 -3.25 16 29 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.39 14.57 5.76 -92.71 -0.53 14.03 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.34 9.60 7.28 -89.69 -0.65 8.95 16 34 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.41 5.00 8.15 -92.71 -0.76 4.24 16 37 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.23 2.91 8.06 -2.91 -0.02 2.89 16 42 H 0.13 1.41 8.11 -2.38 -0.02 1.39 16 43 H 0.08 1.62 8.05 -2.39 -0.02 1.60 16 44 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.09 2.30 5.02 -2.38 -0.01 2.29 16 Total: -1.00 -88.14 387.97 0.38 -87.76 By element: Atomic # 1 Polarization: 48.30 SS G_CDS: -0.97 Total: 47.34 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 5.90 Total: 3.36 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -6.35 Total: -120.88 kcal Atomic # 8 Polarization: -57.33 SS G_CDS: -0.11 Total: -57.45 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 1.90 Total: 39.87 kcal Total: -88.14 0.38 -87.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716624756.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.208 kcal (2) G-P(sol) polarization free energy of solvation -88.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds