Wall clock time and date at job start Tue Mar 31 2020 18:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99959 * 2 1 4 4 H 1.48501 * 109.47266 * 89.99804 * 3 2 1 5 5 H 1.48499 * 109.46684 * 209.99935 * 3 2 1 6 6 H 1.48499 * 109.47124 * 329.99646 * 3 2 1 7 7 C 1.38804 * 119.99842 * 180.27149 * 2 1 3 8 8 H 1.08006 * 120.00345 * 15.04683 * 7 2 1 9 9 N 1.36936 * 120.00237 * 195.05312 * 7 2 1 10 10 C 1.47077 * 136.05462 * 7.44964 * 9 7 2 11 11 C 1.53762 * 87.88391 * 152.97216 * 10 9 7 12 12 O 1.42899 * 114.39339 * 272.67954 * 11 10 9 13 13 C 1.53000 * 114.08340 * 139.78330 * 11 10 9 14 14 N 1.46498 * 109.47266 * 86.55883 * 13 11 10 15 15 C 1.34777 * 120.00059 * 179.97438 * 14 13 11 16 16 O 1.21282 * 120.00110 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99991 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.47199 * 180.02562 * 17 15 14 19 19 C 1.52992 * 109.47182 * 180.02562 * 18 17 15 20 20 N 1.46506 * 109.47405 * 179.97438 * 19 18 17 21 21 C 1.35757 * 119.62471 * 89.99578 * 20 19 18 22 22 C 1.35351 * 120.70361 * 179.97438 * 21 20 19 23 23 C 1.40194 * 119.94353 * 0.03195 * 22 21 20 24 24 C 1.36400 * 119.26806 * 359.97438 * 23 22 21 25 25 C 1.34659 * 119.62132 * 269.73067 * 20 19 18 26 26 O 1.22060 * 119.98799 * 359.97438 * 25 20 19 27 27 C 1.47069 * 136.06301 * 187.83484 * 9 7 2 28 28 H 0.96999 * 120.00088 * 174.91478 * 1 2 3 29 29 H 1.08999 * 113.46528 * 267.70391 * 10 9 7 30 30 H 1.08996 * 113.46472 * 38.14679 * 10 9 7 31 31 H 0.96703 * 113.99756 * 273.58502 * 12 11 10 32 32 H 1.08998 * 109.46826 * 206.55980 * 13 11 10 33 33 H 1.08998 * 109.47192 * 326.55918 * 13 11 10 34 34 H 0.96998 * 119.99730 * 0.02562 * 14 13 11 35 35 H 1.09001 * 109.46908 * 300.00657 * 17 15 14 36 36 H 1.08998 * 109.47077 * 60.00428 * 17 15 14 37 37 H 1.08998 * 109.46826 * 300.00028 * 18 17 15 38 38 H 1.08998 * 109.47192 * 59.99966 * 18 17 15 39 39 H 1.09007 * 109.47355 * 299.99588 * 19 18 17 40 40 H 1.09007 * 109.47334 * 59.99785 * 19 18 17 41 41 H 1.08001 * 119.65050 * 0.02562 * 21 20 19 42 42 H 1.07998 * 120.02504 * 179.97438 * 22 21 20 43 43 H 1.08005 * 120.36498 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.34423 * 180.02562 * 24 23 22 45 45 H 1.08997 * 113.46122 * 321.86021 * 27 9 7 46 46 H 1.09004 * 113.46712 * 92.23779 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.7001 7 6 2.0102 -1.2021 -0.0057 8 1 1.4980 -2.1203 -0.2529 9 7 3.3443 -1.2240 0.3022 10 6 4.3313 -0.2560 0.8042 11 6 5.1075 -1.4423 1.3996 12 8 4.6893 -1.8221 2.7121 13 6 6.6264 -1.3309 1.2538 14 7 7.1707 -0.5695 2.3807 15 6 8.4968 -0.3440 2.4640 16 8 9.2396 -0.7712 1.6056 17 6 9.0568 0.4388 3.6236 18 6 10.5757 0.5502 3.4777 19 6 11.1442 1.3444 4.6553 20 7 12.5988 1.4507 4.5160 21 6 13.1334 2.5001 3.8408 22 6 14.4741 2.6201 3.6993 23 6 15.3255 1.6536 4.2530 24 6 14.7865 0.5999 4.9310 25 6 13.3904 0.5091 5.0639 26 8 12.8950 -0.4257 5.6726 27 6 4.4224 -2.2239 0.2700 28 1 -0.4850 -0.8367 -0.0745 29 1 4.8718 0.2629 0.0125 30 1 3.9296 0.4231 1.5562 31 1 5.1227 -1.3279 3.4214 32 1 7.0646 -2.3289 1.2441 33 1 6.8654 -0.8202 0.3210 34 1 6.5766 -0.2282 3.0674 35 1 8.6188 1.4369 3.6335 36 1 8.8175 -0.0722 4.5562 37 1 11.0139 -0.4477 3.4677 38 1 10.8146 1.0614 2.5452 39 1 10.7061 2.3425 4.6659 40 1 10.9053 0.8329 5.5878 41 1 12.4820 3.2476 3.4126 42 1 14.8876 3.4592 3.1596 43 1 16.3963 1.7424 4.1439 44 1 15.4261 -0.1544 5.3649 45 1 4.0982 -3.2212 0.5669 46 1 4.9863 -2.2243 -0.6628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716940447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:01 Heat of formation + Delta-G solvation = -19.828226 kcal Electronic energy + Delta-G solvation = -27940.983786 eV Core-core repulsion = 23833.670236 eV Total energy + Delta-G solvation = -4107.313550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.73053 -40.19954 -39.07973 -37.26423 -36.00482 -35.31458 -34.20207 -33.19715 -32.29863 -30.29446 -29.36744 -27.83767 -25.87977 -25.49767 -24.36485 -23.54580 -22.14747 -21.39951 -20.65022 -19.67174 -18.33599 -17.75680 -17.66306 -17.29378 -16.72007 -16.53938 -16.21248 -15.91690 -15.83627 -15.18733 -14.88054 -14.73929 -14.51778 -14.28036 -13.87693 -13.65266 -13.37195 -13.27909 -13.13580 -12.80692 -12.71007 -12.54927 -12.34110 -12.24203 -12.04195 -12.02928 -11.63979 -11.24547 -11.00099 -10.56935 -10.54917 -10.35856 -10.29455 -10.14569 -9.97129 -9.40990 -9.24738 -9.07461 -8.73373 -8.39427 -7.22657 -6.33433 -3.24408 0.40585 1.46751 2.18118 2.46096 2.95033 3.26476 3.33408 3.41889 3.56933 4.08310 4.14874 4.20331 4.30487 4.42636 4.49062 4.54560 4.56289 4.63022 4.74410 4.76679 4.81647 4.88084 4.98142 5.02855 5.05515 5.16081 5.41951 5.48971 5.53866 5.58206 5.63787 5.79550 5.81262 5.85001 6.02185 6.07753 6.09220 6.15775 6.27379 6.32574 6.51256 6.66436 7.06203 7.24961 7.66181 7.82302 8.03547 8.21767 8.94898 9.47422 10.31851 11.16997 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.001908 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.788372 B =14674.541053 C =15202.550229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.025 4.025 3 Si 1.064 2.936 4 H -0.295 1.295 5 H -0.283 1.283 6 H -0.295 1.295 7 C -0.301 4.301 8 H 0.083 0.917 9 N -0.613 5.613 10 C 0.080 3.920 11 C 0.072 3.928 12 O -0.518 6.518 13 C 0.105 3.895 14 N -0.728 5.728 15 C 0.514 3.486 16 O -0.539 6.539 17 C -0.138 4.138 18 C -0.118 4.118 19 C 0.088 3.912 20 N -0.494 5.494 21 C 0.136 3.864 22 C -0.236 4.236 23 C -0.017 4.017 24 C -0.246 4.246 25 C 0.511 3.489 26 O -0.550 6.550 27 C 0.134 3.866 28 H 0.262 0.738 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.362 0.638 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.398 0.602 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.162 0.838 42 H 0.145 0.855 43 H 0.134 0.866 44 H 0.147 0.853 45 H 0.057 0.943 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.128 8.441 10.225 32.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.224 4.224 3 Si 0.896 3.104 4 H -0.223 1.223 5 H -0.210 1.210 6 H -0.222 1.222 7 C -0.427 4.427 8 H 0.100 0.900 9 N -0.340 5.340 10 C -0.046 4.046 11 C 0.029 3.971 12 O -0.321 6.321 13 C -0.019 4.019 14 N -0.382 5.382 15 C 0.301 3.699 16 O -0.416 6.416 17 C -0.179 4.179 18 C -0.156 4.156 19 C -0.033 4.033 20 N -0.204 5.204 21 C 0.008 3.992 22 C -0.259 4.259 23 C -0.039 4.039 24 C -0.267 4.267 25 C 0.313 3.687 26 O -0.433 6.433 27 C 0.007 3.993 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.208 0.792 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.233 0.767 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.180 0.820 42 H 0.162 0.838 43 H 0.152 0.848 44 H 0.165 0.835 45 H 0.075 0.925 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 29.413 8.716 9.643 32.157 hybrid contribution 0.246 -0.973 0.336 1.058 sum 29.660 7.743 9.979 32.237 Atomic orbital electron populations 1.70889 1.05357 1.29606 1.51477 1.25771 0.96527 1.00847 0.99256 0.83747 0.74510 0.75892 0.76228 1.22281 1.20953 1.22189 1.20109 0.80181 0.96099 1.46322 0.89955 1.45899 1.03507 1.07695 1.76912 1.23418 0.90878 0.93796 0.96502 1.23261 0.88961 0.99481 0.85424 1.86701 1.68077 1.63703 1.13619 1.21945 0.93334 0.96845 0.89802 1.45980 1.07816 1.56875 1.27490 1.20544 0.81933 0.80175 0.87296 1.90727 1.58190 1.51240 1.41427 1.21567 0.96304 1.01812 0.98228 1.21637 0.93863 1.02436 0.97706 1.22083 0.77139 1.02551 1.01555 1.45559 1.09286 1.21231 1.44367 1.22008 0.95903 0.89685 0.91565 1.20678 0.91921 1.03793 1.09554 1.21459 1.00643 0.91372 0.90408 1.22156 0.93725 1.02765 1.08085 1.17195 0.88292 0.82411 0.80778 1.90978 1.76352 1.32204 1.43736 1.22370 0.88865 0.95343 0.92695 0.92793 0.92929 0.92622 0.79192 0.90534 0.89997 0.76728 0.88311 0.88182 0.90071 0.90513 0.88807 0.87876 0.82043 0.83750 0.84835 0.83523 0.92455 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.46 13.70 55.49 0.76 -28.70 16 2 C -0.02 -0.74 5.50 -17.43 -0.10 -0.84 16 3 Si 1.06 26.23 25.51 -169.99 -4.34 21.90 16 4 H -0.29 -6.89 6.97 56.52 0.39 -6.50 16 5 H -0.28 -6.41 5.65 56.52 0.32 -6.09 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.30 -8.75 11.03 -15.06 -0.17 -8.92 16 8 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 9 N -0.61 -15.07 3.62 -184.56 -0.67 -15.74 16 10 C 0.08 1.62 5.04 -8.36 -0.04 1.57 16 11 C 0.07 1.19 1.74 -89.97 -0.16 1.03 16 12 O -0.52 -8.55 13.56 -35.23 -0.48 -9.03 16 13 C 0.11 1.41 5.43 -4.04 -0.02 1.38 16 14 N -0.73 -7.63 5.34 -60.30 -0.32 -7.96 16 15 C 0.51 5.66 7.83 -10.99 -0.09 5.58 16 16 O -0.54 -8.23 15.98 5.56 0.09 -8.14 16 17 C -0.14 -0.92 5.70 -27.88 -0.16 -1.08 16 18 C -0.12 -0.91 4.83 -26.74 -0.13 -1.04 16 19 C 0.09 0.53 5.34 -4.04 -0.02 0.51 16 20 N -0.49 -3.66 2.58 -119.77 -0.31 -3.97 16 21 C 0.14 0.62 10.28 -16.84 -0.17 0.45 16 22 C -0.24 -1.00 10.01 -39.88 -0.40 -1.40 16 23 C -0.02 -0.09 10.10 -39.51 -0.40 -0.49 16 24 C -0.25 -2.00 9.99 -39.38 -0.39 -2.39 16 25 C 0.51 5.42 7.41 -15.45 -0.11 5.30 16 26 O -0.55 -7.99 16.63 4.86 0.08 -7.90 16 27 C 0.13 2.64 8.10 -8.50 -0.07 2.57 16 28 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 29 H 0.05 1.02 6.80 -51.93 -0.35 0.67 16 30 H 0.06 1.15 6.24 -51.93 -0.32 0.83 16 31 H 0.36 4.07 7.21 45.56 0.33 4.40 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.13 7.89 -51.93 -0.41 0.72 16 34 H 0.40 3.12 6.95 -40.82 -0.28 2.84 16 35 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.09 0.25 8.01 -51.93 -0.42 -0.16 16 40 H 0.10 0.73 7.38 -51.93 -0.38 0.35 16 41 H 0.16 0.20 8.04 -52.49 -0.42 -0.22 16 42 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 43 H 0.13 0.35 8.06 -52.48 -0.42 -0.07 16 44 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -40.67 381.34 -8.01 -48.68 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.15 Total: 2.87 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -2.43 Total: 2.24 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.54 Total: -56.37 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.31 Total: -25.07 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -4.34 Total: 21.90 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -40.67 -8.01 -48.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716940447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.855 kcal (2) G-P(sol) polarization free energy of solvation -40.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds