Wall clock time and date at job start Tue Mar 31 2020 18:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99959 * 2 1 4 4 H 1.48501 * 109.47266 * 89.99804 * 3 2 1 5 5 H 1.48499 * 109.46684 * 209.99935 * 3 2 1 6 6 H 1.48499 * 109.47124 * 329.99646 * 3 2 1 7 7 C 1.38804 * 119.99842 * 180.27149 * 2 1 3 8 8 H 1.08006 * 120.00345 * 15.04683 * 7 2 1 9 9 N 1.36936 * 120.00237 * 195.05312 * 7 2 1 10 10 C 1.47077 * 136.05462 * 7.44964 * 9 7 2 11 11 C 1.53762 * 87.88391 * 152.97216 * 10 9 7 12 12 O 1.42899 * 114.39339 * 272.67954 * 11 10 9 13 13 C 1.53000 * 114.08340 * 139.78330 * 11 10 9 14 14 N 1.46498 * 109.47266 * 86.55883 * 13 11 10 15 15 C 1.34777 * 120.00059 * 179.97438 * 14 13 11 16 16 O 1.21282 * 120.00110 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99991 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.47199 * 180.02562 * 17 15 14 19 19 C 1.52992 * 109.47182 * 180.02562 * 18 17 15 20 20 N 1.46506 * 109.47405 * 179.97438 * 19 18 17 21 21 C 1.35757 * 119.62471 * 89.99578 * 20 19 18 22 22 C 1.35351 * 120.70361 * 179.97438 * 21 20 19 23 23 C 1.40194 * 119.94353 * 0.03195 * 22 21 20 24 24 C 1.36400 * 119.26806 * 359.97438 * 23 22 21 25 25 C 1.34659 * 119.62132 * 269.73067 * 20 19 18 26 26 O 1.22060 * 119.98799 * 359.97438 * 25 20 19 27 27 C 1.47069 * 136.06301 * 187.83484 * 9 7 2 28 28 H 0.96999 * 120.00088 * 174.91478 * 1 2 3 29 29 H 1.08999 * 113.46528 * 267.70391 * 10 9 7 30 30 H 1.08996 * 113.46472 * 38.14679 * 10 9 7 31 31 H 0.96703 * 113.99756 * 273.58502 * 12 11 10 32 32 H 1.08998 * 109.46826 * 206.55980 * 13 11 10 33 33 H 1.08998 * 109.47192 * 326.55918 * 13 11 10 34 34 H 0.96998 * 119.99730 * 0.02562 * 14 13 11 35 35 H 1.09001 * 109.46908 * 300.00657 * 17 15 14 36 36 H 1.08998 * 109.47077 * 60.00428 * 17 15 14 37 37 H 1.08998 * 109.46826 * 300.00028 * 18 17 15 38 38 H 1.08998 * 109.47192 * 59.99966 * 18 17 15 39 39 H 1.09007 * 109.47355 * 299.99588 * 19 18 17 40 40 H 1.09007 * 109.47334 * 59.99785 * 19 18 17 41 41 H 1.08001 * 119.65050 * 0.02562 * 21 20 19 42 42 H 1.07998 * 120.02504 * 179.97438 * 22 21 20 43 43 H 1.08005 * 120.36498 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.34423 * 180.02562 * 24 23 22 45 45 H 1.08997 * 113.46122 * 321.86021 * 27 9 7 46 46 H 1.09004 * 113.46712 * 92.23779 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.7001 7 6 2.0102 -1.2021 -0.0057 8 1 1.4980 -2.1203 -0.2529 9 7 3.3443 -1.2240 0.3022 10 6 4.3313 -0.2560 0.8042 11 6 5.1075 -1.4423 1.3996 12 8 4.6893 -1.8221 2.7121 13 6 6.6264 -1.3309 1.2538 14 7 7.1707 -0.5695 2.3807 15 6 8.4968 -0.3440 2.4640 16 8 9.2396 -0.7712 1.6056 17 6 9.0568 0.4388 3.6236 18 6 10.5757 0.5502 3.4777 19 6 11.1442 1.3444 4.6553 20 7 12.5988 1.4507 4.5160 21 6 13.1334 2.5001 3.8408 22 6 14.4741 2.6201 3.6993 23 6 15.3255 1.6536 4.2530 24 6 14.7865 0.5999 4.9310 25 6 13.3904 0.5091 5.0639 26 8 12.8950 -0.4257 5.6726 27 6 4.4224 -2.2239 0.2700 28 1 -0.4850 -0.8367 -0.0745 29 1 4.8718 0.2629 0.0125 30 1 3.9296 0.4231 1.5562 31 1 5.1227 -1.3279 3.4214 32 1 7.0646 -2.3289 1.2441 33 1 6.8654 -0.8202 0.3210 34 1 6.5766 -0.2282 3.0674 35 1 8.6188 1.4369 3.6335 36 1 8.8175 -0.0722 4.5562 37 1 11.0139 -0.4477 3.4677 38 1 10.8146 1.0614 2.5452 39 1 10.7061 2.3425 4.6659 40 1 10.9053 0.8329 5.5878 41 1 12.4820 3.2476 3.4126 42 1 14.8876 3.4592 3.1596 43 1 16.3963 1.7424 4.1439 44 1 15.4261 -0.1544 5.3649 45 1 4.0982 -3.2212 0.5669 46 1 4.9863 -2.2243 -0.6628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716940447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:00 Heat of formation + Delta-G solvation = -53.921703 kcal Electronic energy + Delta-G solvation = -27942.462190 eV Core-core repulsion = 23833.670236 eV Total energy + Delta-G solvation = -4108.791955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.28001 -41.35922 -40.30368 -37.94420 -36.83530 -36.44719 -35.27656 -34.43189 -33.75966 -30.85905 -30.66929 -28.84172 -27.16312 -27.09182 -24.89176 -24.22323 -23.23537 -22.53214 -21.53309 -21.18134 -19.71467 -18.96375 -18.25644 -18.19460 -17.64863 -17.32399 -17.15874 -16.86696 -16.61184 -16.36952 -15.93657 -15.70401 -15.41845 -15.39149 -15.21887 -15.03038 -14.68973 -14.50436 -14.15353 -13.81138 -13.60390 -13.34820 -13.23590 -12.97074 -12.87643 -12.78440 -12.65597 -12.54614 -12.32541 -11.90247 -11.83000 -11.79425 -11.38780 -11.11649 -10.98837 -10.96893 -10.84751 -10.63283 -10.15910 -9.27062 -8.93196 -8.65004 -5.47704 -0.03981 0.95699 1.37234 1.52025 1.64133 1.66955 1.68469 2.12081 2.54907 2.72513 2.88479 3.00006 3.14267 3.31326 3.67434 3.70353 3.76181 3.80638 3.98105 4.03279 4.18281 4.25039 4.31751 4.35709 4.45385 4.53288 4.55904 4.57518 4.60165 4.64390 4.70061 4.76470 4.79922 5.02899 5.03931 5.11021 5.16965 5.19384 5.25405 5.33438 5.43892 5.70972 5.92982 6.14147 6.46110 6.67496 6.77122 7.02587 7.22301 7.31046 8.24172 8.86862 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.001908 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.788372 B =14674.541053 C =15202.550229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.088 4.088 3 Si 1.107 2.893 4 H -0.271 1.271 5 H -0.250 1.250 6 H -0.303 1.303 7 C -0.293 4.293 8 H 0.042 0.958 9 N -0.650 5.650 10 C 0.075 3.925 11 C 0.106 3.894 12 O -0.538 6.538 13 C 0.120 3.880 14 N -0.719 5.719 15 C 0.512 3.488 16 O -0.587 6.587 17 C -0.129 4.129 18 C -0.110 4.110 19 C 0.089 3.911 20 N -0.494 5.494 21 C 0.135 3.865 22 C -0.237 4.237 23 C 0.004 3.996 24 C -0.290 4.290 25 C 0.491 3.509 26 O -0.614 6.614 27 C 0.122 3.878 28 H 0.244 0.756 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.386 0.614 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.414 0.586 35 H 0.141 0.859 36 H 0.118 0.882 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.142 0.858 40 H 0.087 0.913 41 H 0.206 0.794 42 H 0.180 0.820 43 H 0.162 0.838 44 H 0.138 0.862 45 H 0.045 0.955 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.962 12.194 10.572 36.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.279 4.279 3 Si 0.931 3.069 4 H -0.197 1.197 5 H -0.175 1.175 6 H -0.231 1.231 7 C -0.420 4.420 8 H 0.060 0.940 9 N -0.377 5.377 10 C -0.050 4.050 11 C 0.063 3.937 12 O -0.345 6.345 13 C -0.006 4.006 14 N -0.374 5.374 15 C 0.301 3.699 16 O -0.466 6.466 17 C -0.169 4.169 18 C -0.149 4.149 19 C -0.032 4.032 20 N -0.203 5.203 21 C 0.008 3.992 22 C -0.259 4.259 23 C -0.018 4.018 24 C -0.312 4.312 25 C 0.296 3.704 26 O -0.502 6.502 27 C -0.004 4.004 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.251 0.749 35 H 0.159 0.841 36 H 0.136 0.864 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.160 0.840 40 H 0.106 0.894 41 H 0.222 0.778 42 H 0.197 0.803 43 H 0.180 0.820 44 H 0.156 0.844 45 H 0.063 0.937 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 32.301 12.482 10.023 36.050 hybrid contribution -0.568 -2.205 0.178 2.284 sum 31.733 10.277 10.201 34.881 Atomic orbital electron populations 1.71016 1.06803 1.28605 1.54806 1.27281 0.96500 1.04834 0.99306 0.83275 0.74532 0.71306 0.77788 1.19721 1.17465 1.23134 1.19924 0.82942 0.94627 1.44548 0.93981 1.45928 1.03185 1.11021 1.77602 1.23678 0.89975 0.94363 0.96965 1.22685 0.90416 0.96002 0.84585 1.86657 1.69075 1.64458 1.14296 1.21601 0.90495 0.97445 0.91026 1.45856 1.08135 1.56343 1.27023 1.21294 0.81426 0.79551 0.87674 1.90719 1.59238 1.53191 1.43502 1.21615 0.95113 1.03452 0.96692 1.21516 0.94714 1.00203 0.98464 1.22208 0.76530 1.04596 0.99875 1.45618 1.09792 1.21131 1.43713 1.22816 0.97057 0.89120 0.90218 1.21196 0.91826 1.04115 1.08798 1.21865 1.02432 0.89796 0.87658 1.22126 0.92919 1.04819 1.11300 1.17605 0.89436 0.82505 0.80877 1.90919 1.77384 1.34834 1.47073 1.22670 0.88054 0.94324 0.95305 0.94665 0.91082 0.92639 0.76331 0.90697 0.89824 0.74871 0.84125 0.86429 0.94604 0.90591 0.84048 0.89449 0.77755 0.80293 0.82008 0.84393 0.93702 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.18 13.70 21.65 0.30 -62.88 16 2 C -0.09 -5.29 5.50 84.86 0.47 -4.82 16 3 Si 1.11 51.59 25.51 68.60 1.75 53.34 16 4 H -0.27 -11.49 6.97 99.48 0.69 -10.80 16 5 H -0.25 -10.16 5.65 99.48 0.56 -9.60 16 6 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 7 C -0.29 -17.42 11.03 84.03 0.93 -16.49 16 8 H 0.04 2.75 8.06 -2.91 -0.02 2.72 16 9 N -0.65 -31.36 3.62 -738.30 -2.67 -34.04 16 10 C 0.08 2.78 5.04 83.27 0.42 3.20 16 11 C 0.11 3.21 1.74 -10.37 -0.02 3.19 16 12 O -0.54 -16.33 13.56 -148.98 -2.02 -18.35 16 13 C 0.12 2.81 5.43 86.38 0.47 3.28 16 14 N -0.72 -12.35 5.34 -463.07 -2.47 -14.82 16 15 C 0.51 9.75 7.83 87.66 0.69 10.44 16 16 O -0.59 -17.01 15.98 -3.03 -0.05 -17.06 16 17 C -0.13 -1.23 5.70 29.85 0.17 -1.06 16 18 C -0.11 -1.50 4.83 30.59 0.15 -1.35 16 19 C 0.09 0.84 5.34 86.38 0.46 1.30 16 20 N -0.49 -6.54 2.58 -650.97 -1.68 -8.22 16 21 C 0.13 0.71 10.28 83.42 0.86 1.57 16 22 C -0.24 -1.07 10.01 22.08 0.22 -0.85 16 23 C 0.00 0.04 10.10 22.32 0.23 0.26 16 24 C -0.29 -4.90 9.99 22.40 0.22 -4.68 16 25 C 0.49 10.88 7.41 84.82 0.63 11.51 16 26 O -0.61 -19.49 16.63 -5.51 -0.09 -19.58 16 27 C 0.12 4.66 8.10 83.18 0.67 5.33 16 28 H 0.24 16.16 8.73 -92.71 -0.81 15.35 16 29 H 0.07 2.42 6.80 -2.39 -0.02 2.41 16 30 H 0.06 2.07 6.24 -2.39 -0.01 2.06 16 31 H 0.39 7.25 7.21 -74.06 -0.53 6.72 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.08 2.01 7.89 -2.39 -0.02 1.99 16 34 H 0.41 4.55 6.95 -92.71 -0.64 3.90 16 35 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.03 0.82 8.10 -2.39 -0.02 0.80 16 38 H 0.08 1.03 8.10 -2.39 -0.02 1.01 16 39 H 0.14 -0.01 8.01 -2.38 -0.02 -0.02 16 40 H 0.09 1.16 7.38 -2.38 -0.02 1.14 16 41 H 0.21 -0.75 8.04 -2.91 -0.02 -0.77 16 42 H 0.18 -0.39 8.06 -2.91 -0.02 -0.41 16 43 H 0.16 0.36 8.06 -2.91 -0.02 0.34 16 44 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 45 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 Total: -1.00 -97.46 381.34 -0.75 -98.21 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -0.36 Total: 12.57 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 6.56 Total: 10.83 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -6.53 Total: -119.97 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -2.16 Total: -54.98 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 1.75 Total: 53.34 kcal Total: -97.46 -0.75 -98.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716940447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.291 kcal (2) G-P(sol) polarization free energy of solvation -97.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds