Wall clock time and date at job start Tue Mar 31 2020 18:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86809 * 119.99791 * 2 1 4 4 H 1.48496 * 109.47042 * 268.97288 * 3 2 1 5 5 H 1.48500 * 109.46848 * 28.97745 * 3 2 1 6 6 H 1.48496 * 109.46936 * 148.97417 * 3 2 1 7 7 C 1.38807 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99684 * 343.16062 * 7 2 1 9 9 N 1.36936 * 120.00011 * 163.16039 * 7 2 1 10 10 C 1.47153 * 120.98191 * 329.51372 * 9 7 2 11 11 C 1.53297 * 108.41387 * 230.54187 * 10 9 7 12 12 O 1.42966 * 109.22519 * 307.67973 * 11 10 9 13 13 C 1.42963 * 114.16347 * 62.58008 * 12 11 10 14 14 C 1.47229 * 121.02973 * 149.54168 * 9 7 2 15 15 H 1.09008 * 109.67416 * 249.19284 * 14 9 7 16 16 C 1.53000 * 109.66981 * 9.73257 * 14 9 7 17 17 N 1.46506 * 109.47016 * 298.60642 * 16 14 9 18 18 C 1.34775 * 119.99884 * 180.02562 * 17 16 14 19 19 O 1.21281 * 120.00064 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00081 * 180.02562 * 18 17 16 21 21 C 1.53000 * 109.47213 * 179.97438 * 20 18 17 22 22 N 1.46495 * 109.46831 * 179.97438 * 21 20 18 23 23 C 1.35763 * 119.62851 * 89.99927 * 22 21 20 24 24 C 1.35347 * 120.70355 * 179.97438 * 23 22 21 25 25 C 1.40197 * 119.95036 * 0.02562 * 24 23 22 26 26 C 1.36397 * 119.26156 * 0.02562 * 25 24 23 27 27 C 1.34661 * 119.62326 * 269.72420 * 22 21 20 28 28 O 1.22065 * 119.98707 * 359.97438 * 27 22 21 29 29 H 0.97003 * 119.99751 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.67662 * 110.80419 * 10 9 7 31 31 H 1.08997 * 109.68046 * 350.28819 * 10 9 7 32 32 H 1.08998 * 109.51263 * 67.61112 * 11 10 9 33 33 H 1.09003 * 109.51236 * 187.70770 * 11 10 9 34 34 H 1.09005 * 109.51102 * 57.34461 * 13 12 11 35 35 H 1.08997 * 109.50952 * 177.49363 * 13 12 11 36 36 H 1.08995 * 109.47280 * 58.60856 * 16 14 9 37 37 H 1.09001 * 109.47347 * 178.60736 * 16 14 9 38 38 H 0.96995 * 120.00001 * 359.97438 * 17 16 14 39 39 H 1.09004 * 109.47098 * 299.99904 * 20 18 17 40 40 H 1.09001 * 109.47098 * 59.99513 * 20 18 17 41 41 H 1.09004 * 109.47150 * 300.00043 * 21 20 18 42 42 H 1.09001 * 109.46833 * 59.99722 * 21 20 18 43 43 H 1.07998 * 119.64880 * 0.02562 * 23 22 21 44 44 H 1.08008 * 120.02484 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.36877 * 179.97438 * 25 24 23 46 46 H 1.08006 * 120.34322 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5194 2.0340 -1.3998 5 1 1.4369 2.6589 0.6783 6 1 3.5367 1.4467 0.7216 7 6 2.0103 -1.2021 0.0005 8 1 1.5050 -2.1172 0.2719 9 7 3.3357 -1.2276 -0.3430 10 6 3.8880 -0.2592 -1.3035 11 6 4.6727 -1.0301 -2.3712 12 8 5.6136 -1.8953 -1.7309 13 6 5.0179 -2.8996 -0.9060 14 6 4.2509 -2.2246 0.2367 15 1 4.9529 -1.7312 0.9089 16 6 3.4478 -3.2735 1.0085 17 7 2.7231 -2.6248 2.1041 18 6 1.9446 -3.3580 2.9243 19 8 1.8435 -4.5547 2.7551 20 6 1.1987 -2.6907 4.0510 21 6 0.3957 -3.7397 4.8229 22 7 -0.3288 -3.0910 5.9185 23 6 -1.5822 -2.6148 5.7051 24 6 -2.2715 -2.0122 6.7019 25 6 -1.6909 -1.8744 7.9705 26 6 -0.4312 -2.3525 8.1827 27 6 0.2538 -2.9787 7.1273 28 8 1.3791 -3.4167 7.3052 29 1 -0.4850 0.8401 0.0004 30 1 4.5535 0.4319 -0.7864 31 1 3.0760 0.2954 -1.7736 32 1 3.9835 -1.6229 -2.9726 33 1 5.2026 -0.3260 -3.0129 34 1 4.3299 -3.4993 -1.5020 35 1 5.7968 -3.5405 -0.4930 36 1 2.7366 -3.7535 0.3364 37 1 4.1261 -4.0235 1.4154 38 1 2.8043 -1.6678 2.2397 39 1 1.9097 -2.2100 4.7230 40 1 0.5199 -1.9413 3.6438 41 1 -0.3153 -4.2200 4.1507 42 1 1.0742 -4.4893 5.2300 43 1 -2.0343 -2.7187 4.7298 44 1 -3.2682 -1.6378 6.5201 45 1 -2.2347 -1.3944 8.7707 46 1 0.0327 -2.2561 9.1532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717135867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:36 Heat of formation + Delta-G solvation = -45.681733 kcal Electronic energy + Delta-G solvation = -29537.628621 eV Core-core repulsion = 25429.193979 eV Total energy + Delta-G solvation = -4108.434643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.37651 -39.47260 -38.58935 -36.90336 -35.63433 -34.99340 -33.72941 -31.91992 -31.34759 -30.70664 -29.82654 -27.62170 -26.17201 -24.64703 -23.69565 -23.48758 -22.44171 -21.89162 -20.07882 -19.68570 -17.75774 -17.35378 -17.11339 -16.50860 -16.26251 -16.00580 -15.95554 -15.57533 -15.28155 -14.93685 -14.78483 -14.57025 -14.44275 -14.16782 -14.01309 -13.60543 -13.16551 -12.93507 -12.63401 -12.54873 -12.41070 -12.17743 -12.02136 -11.92465 -11.75457 -11.63690 -11.19883 -11.08281 -10.82918 -10.62156 -10.40740 -10.25041 -9.94558 -9.88898 -9.71066 -9.58533 -9.28889 -8.77190 -8.38002 -8.04515 -7.10988 -6.14110 -3.56974 0.75313 1.81015 2.56333 3.10108 3.16282 3.33805 3.34460 3.56354 3.77174 4.24558 4.33490 4.54097 4.59109 4.59333 4.81333 4.89908 5.07191 5.11982 5.14766 5.19422 5.30212 5.37560 5.49089 5.56251 5.64570 5.73582 5.76230 5.84284 5.85620 5.89140 5.92636 5.98340 6.04664 6.06707 6.16705 6.17992 6.29309 6.44643 6.45199 6.66164 7.00650 7.05012 7.54562 7.71704 8.00830 8.09226 8.15124 8.68623 8.73034 9.49026 9.86763 10.99797 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.003220 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.704036 B = 8693.867068 C = 9878.417900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.030 3.970 3 Si 0.881 3.119 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.266 4.266 8 H 0.097 0.903 9 N -0.607 5.607 10 C 0.090 3.910 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.054 3.946 14 C 0.127 3.873 15 H 0.047 0.953 16 C 0.137 3.863 17 N -0.692 5.692 18 C 0.522 3.478 19 O -0.564 6.564 20 C -0.155 4.155 21 C 0.108 3.892 22 N -0.493 5.493 23 C 0.143 3.857 24 C -0.241 4.241 25 C -0.015 4.015 26 C -0.251 4.251 27 C 0.510 3.490 28 O -0.553 6.553 29 H 0.264 0.736 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.412 0.588 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.165 0.835 44 H 0.144 0.856 45 H 0.132 0.868 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 -2.396 8.301 8.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.170 4.170 3 Si 0.711 3.289 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.394 4.394 8 H 0.114 0.886 9 N -0.334 5.334 10 C -0.035 4.035 11 C -0.032 4.032 12 O -0.306 6.306 13 C -0.025 4.025 14 C 0.021 3.979 15 H 0.064 0.936 16 C 0.012 3.988 17 N -0.343 5.343 18 C 0.307 3.693 19 O -0.444 6.444 20 C -0.196 4.196 21 C -0.013 4.013 22 N -0.203 5.203 23 C 0.015 3.985 24 C -0.264 4.264 25 C -0.037 4.037 26 C -0.273 4.273 27 C 0.312 3.688 28 O -0.436 6.436 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.249 0.751 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.182 0.818 44 H 0.162 0.838 45 H 0.150 0.850 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.127 -3.430 8.244 9.000 hybrid contribution -0.062 1.813 -0.074 1.815 sum -1.189 -1.617 8.170 8.413 Atomic orbital electron populations 1.69795 1.05582 1.26658 1.52495 1.25321 0.95189 0.97430 0.99090 0.87020 0.79678 0.84627 0.77525 1.21438 1.23095 1.19624 1.19008 0.82760 0.94739 1.42877 0.88564 1.44462 1.06422 1.35430 1.47084 1.22059 0.97327 0.92789 0.91303 1.23064 0.92112 0.93164 0.94868 1.87833 1.33422 1.45651 1.63726 1.22909 0.97241 0.89965 0.92337 1.21475 0.92075 0.90806 0.93575 0.93573 1.21146 0.94925 0.94237 0.88462 1.45884 1.46543 1.12444 1.29421 1.20040 0.79466 0.86993 0.82797 1.90656 1.65026 1.14973 1.73760 1.21893 1.00894 0.99776 0.97025 1.21742 0.97258 0.95309 0.87028 1.45661 1.14124 1.47772 1.12731 1.22128 0.84078 0.91603 1.00701 1.20655 1.02783 1.09583 0.93413 1.21431 0.93804 0.91855 0.96601 1.22105 0.97175 1.07754 1.00216 1.17202 0.87283 0.82032 0.82252 1.90968 1.18893 1.51374 1.82323 0.92612 0.94805 0.90022 0.92996 0.89728 0.92889 0.89321 0.91031 0.91992 0.75071 0.88591 0.87763 0.88086 0.87428 0.81759 0.83786 0.85017 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 13.97 55.49 0.78 -24.00 16 2 C 0.03 0.76 5.28 -17.43 -0.09 0.67 16 3 Si 0.88 20.37 24.28 -169.99 -4.13 16.24 16 4 H -0.29 -6.51 6.54 56.52 0.37 -6.14 16 5 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.27 -6.20 6.65 56.52 0.38 -5.82 16 7 C -0.27 -6.41 7.59 -15.06 -0.11 -6.52 16 8 H 0.10 2.52 5.99 -52.49 -0.31 2.20 16 9 N -0.61 -12.85 2.79 -164.24 -0.46 -13.31 16 10 C 0.09 1.82 4.38 -3.53 -0.02 1.81 16 11 C 0.05 0.79 6.99 37.31 0.26 1.05 16 12 O -0.39 -6.80 10.74 -35.23 -0.38 -7.18 16 13 C 0.05 0.87 6.29 37.31 0.23 1.11 16 14 C 0.13 2.27 3.20 -67.38 -0.22 2.06 16 15 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 16 C 0.14 2.39 4.44 -4.04 -0.02 2.37 16 17 N -0.69 -12.43 3.80 -60.29 -0.23 -12.66 16 18 C 0.52 9.27 7.83 -10.99 -0.09 9.18 16 19 O -0.56 -11.33 15.98 5.56 0.09 -11.24 16 20 C -0.16 -2.30 6.02 -27.88 -0.17 -2.47 16 21 C 0.11 1.48 4.63 -4.04 -0.02 1.46 16 22 N -0.49 -6.26 2.58 -119.77 -0.31 -6.56 16 23 C 0.14 1.40 10.28 -16.84 -0.17 1.23 16 24 C -0.24 -2.04 10.01 -39.88 -0.40 -2.44 16 25 C -0.02 -0.13 10.10 -39.51 -0.40 -0.53 16 26 C -0.25 -2.90 9.99 -39.38 -0.39 -3.29 16 27 C 0.51 7.50 7.41 -15.44 -0.11 7.38 16 28 O -0.55 -10.21 16.63 4.86 0.08 -10.12 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.03 0.69 6.82 -51.93 -0.35 0.34 16 31 H 0.08 1.77 4.89 -51.93 -0.25 1.51 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.39 7.53 -51.93 -0.39 1.00 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.41 7.60 7.39 -40.82 -0.30 7.29 16 39 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.10 1.26 7.97 -51.93 -0.41 0.85 16 42 H 0.11 1.67 7.33 -51.93 -0.38 1.29 16 43 H 0.17 1.24 8.04 -52.49 -0.42 0.82 16 44 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.15 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -32.29 369.08 -7.38 -39.68 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -6.67 Total: 10.55 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: -1.71 Total: 13.06 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.22 Total: -56.53 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.21 Total: -28.55 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.13 Total: 16.24 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.29 -7.38 -39.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717135867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.006 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds