Wall clock time and date at job start Tue Mar 31 2020 18:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86809 * 119.99791 * 2 1 4 4 H 1.48496 * 109.47042 * 268.97288 * 3 2 1 5 5 H 1.48500 * 109.46848 * 28.97745 * 3 2 1 6 6 H 1.48496 * 109.46936 * 148.97417 * 3 2 1 7 7 C 1.38807 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99684 * 343.16062 * 7 2 1 9 9 N 1.36936 * 120.00011 * 163.16039 * 7 2 1 10 10 C 1.47153 * 120.98191 * 329.51372 * 9 7 2 11 11 C 1.53297 * 108.41387 * 230.54187 * 10 9 7 12 12 O 1.42966 * 109.22519 * 307.67973 * 11 10 9 13 13 C 1.42963 * 114.16347 * 62.58008 * 12 11 10 14 14 C 1.47229 * 121.02973 * 149.54168 * 9 7 2 15 15 H 1.09008 * 109.67416 * 249.19284 * 14 9 7 16 16 C 1.53000 * 109.66981 * 9.73257 * 14 9 7 17 17 N 1.46506 * 109.47016 * 298.60642 * 16 14 9 18 18 C 1.34775 * 119.99884 * 180.02562 * 17 16 14 19 19 O 1.21281 * 120.00064 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00081 * 180.02562 * 18 17 16 21 21 C 1.53000 * 109.47213 * 179.97438 * 20 18 17 22 22 N 1.46495 * 109.46831 * 179.97438 * 21 20 18 23 23 C 1.35763 * 119.62851 * 89.99927 * 22 21 20 24 24 C 1.35347 * 120.70355 * 179.97438 * 23 22 21 25 25 C 1.40197 * 119.95036 * 0.02562 * 24 23 22 26 26 C 1.36397 * 119.26156 * 0.02562 * 25 24 23 27 27 C 1.34661 * 119.62326 * 269.72420 * 22 21 20 28 28 O 1.22065 * 119.98707 * 359.97438 * 27 22 21 29 29 H 0.97003 * 119.99751 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.67662 * 110.80419 * 10 9 7 31 31 H 1.08997 * 109.68046 * 350.28819 * 10 9 7 32 32 H 1.08998 * 109.51263 * 67.61112 * 11 10 9 33 33 H 1.09003 * 109.51236 * 187.70770 * 11 10 9 34 34 H 1.09005 * 109.51102 * 57.34461 * 13 12 11 35 35 H 1.08997 * 109.50952 * 177.49363 * 13 12 11 36 36 H 1.08995 * 109.47280 * 58.60856 * 16 14 9 37 37 H 1.09001 * 109.47347 * 178.60736 * 16 14 9 38 38 H 0.96995 * 120.00001 * 359.97438 * 17 16 14 39 39 H 1.09004 * 109.47098 * 299.99904 * 20 18 17 40 40 H 1.09001 * 109.47098 * 59.99513 * 20 18 17 41 41 H 1.09004 * 109.47150 * 300.00043 * 21 20 18 42 42 H 1.09001 * 109.46833 * 59.99722 * 21 20 18 43 43 H 1.07998 * 119.64880 * 0.02562 * 23 22 21 44 44 H 1.08008 * 120.02484 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.36877 * 179.97438 * 25 24 23 46 46 H 1.08006 * 120.34322 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5194 2.0340 -1.3998 5 1 1.4369 2.6589 0.6783 6 1 3.5367 1.4467 0.7216 7 6 2.0103 -1.2021 0.0005 8 1 1.5050 -2.1172 0.2719 9 7 3.3357 -1.2276 -0.3430 10 6 3.8880 -0.2592 -1.3035 11 6 4.6727 -1.0301 -2.3712 12 8 5.6136 -1.8953 -1.7309 13 6 5.0179 -2.8996 -0.9060 14 6 4.2509 -2.2246 0.2367 15 1 4.9529 -1.7312 0.9089 16 6 3.4478 -3.2735 1.0085 17 7 2.7231 -2.6248 2.1041 18 6 1.9446 -3.3580 2.9243 19 8 1.8435 -4.5547 2.7551 20 6 1.1987 -2.6907 4.0510 21 6 0.3957 -3.7397 4.8229 22 7 -0.3288 -3.0910 5.9185 23 6 -1.5822 -2.6148 5.7051 24 6 -2.2715 -2.0122 6.7019 25 6 -1.6909 -1.8744 7.9705 26 6 -0.4312 -2.3525 8.1827 27 6 0.2538 -2.9787 7.1273 28 8 1.3791 -3.4167 7.3052 29 1 -0.4850 0.8401 0.0004 30 1 4.5535 0.4319 -0.7864 31 1 3.0760 0.2954 -1.7736 32 1 3.9835 -1.6229 -2.9726 33 1 5.2026 -0.3260 -3.0129 34 1 4.3299 -3.4993 -1.5020 35 1 5.7968 -3.5405 -0.4930 36 1 2.7366 -3.7535 0.3364 37 1 4.1261 -4.0235 1.4154 38 1 2.8043 -1.6678 2.2397 39 1 1.9097 -2.2100 4.7230 40 1 0.5199 -1.9413 3.6438 41 1 -0.3153 -4.2200 4.1507 42 1 1.0742 -4.4893 5.2300 43 1 -2.0343 -2.7187 4.7298 44 1 -3.2682 -1.6378 6.5201 45 1 -2.2347 -1.3944 8.7707 46 1 0.0327 -2.2561 9.1532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717135867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:35 Heat of formation + Delta-G solvation = -68.626346 kcal Electronic energy + Delta-G solvation = -29538.623574 eV Core-core repulsion = 25429.193979 eV Total energy + Delta-G solvation = -4109.429596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.35967 -40.93959 -40.03653 -37.96301 -37.09937 -36.02740 -35.34378 -33.63034 -32.82879 -31.92143 -30.72982 -29.25322 -27.48890 -25.80071 -25.21151 -24.61534 -23.76916 -23.02952 -21.62284 -21.16789 -18.99928 -18.58672 -18.29884 -17.86492 -17.58824 -17.41656 -17.04477 -16.86178 -16.77760 -16.27356 -16.20699 -16.00846 -15.61668 -15.39793 -15.13178 -15.07939 -14.52536 -14.42988 -14.32821 -13.81325 -13.76048 -13.47144 -13.25896 -13.12970 -12.83830 -12.83738 -12.70418 -12.35259 -12.33337 -12.26709 -12.05207 -11.56275 -11.37734 -11.22631 -11.09047 -11.00861 -10.83159 -10.50449 -9.91374 -8.97103 -8.86318 -8.11420 -5.50234 -0.06569 0.92959 1.30893 1.44243 1.49845 1.55171 1.65800 2.34682 2.42964 2.70465 2.87464 3.02970 3.22581 3.61999 3.67076 3.77572 3.92270 3.93069 4.00996 4.13085 4.19128 4.21715 4.26744 4.32252 4.37641 4.39320 4.46621 4.46811 4.59516 4.67540 4.69746 4.71402 4.76828 4.90515 4.92790 5.09642 5.19713 5.21932 5.40250 5.54134 5.66726 5.87001 6.11821 6.18717 6.21097 6.60923 6.84819 6.98336 7.25680 7.58948 8.00718 9.05707 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.003220 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.704036 B = 8693.867068 C = 9878.417900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.016 4.016 3 Si 0.932 3.068 4 H -0.280 1.280 5 H -0.316 1.316 6 H -0.266 1.266 7 C -0.236 4.236 8 H 0.072 0.928 9 N -0.620 5.620 10 C 0.085 3.915 11 C 0.053 3.947 12 O -0.391 6.391 13 C 0.057 3.943 14 C 0.128 3.872 15 H 0.054 0.946 16 C 0.140 3.860 17 N -0.695 5.695 18 C 0.519 3.481 19 O -0.588 6.588 20 C -0.142 4.142 21 C 0.116 3.884 22 N -0.493 5.493 23 C 0.124 3.876 24 C -0.227 4.227 25 C 0.008 3.992 26 C -0.279 4.279 27 C 0.491 3.509 28 O -0.611 6.611 29 H 0.260 0.740 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.115 0.885 34 H 0.051 0.949 35 H 0.123 0.877 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.410 0.590 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.188 0.812 44 H 0.181 0.819 45 H 0.172 0.828 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 -1.573 8.302 8.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.213 4.213 3 Si 0.762 3.238 4 H -0.207 1.207 5 H -0.245 1.245 6 H -0.191 1.191 7 C -0.366 4.366 8 H 0.089 0.911 9 N -0.347 5.347 10 C -0.040 4.040 11 C -0.025 4.025 12 O -0.309 6.309 13 C -0.022 4.022 14 C 0.022 3.978 15 H 0.071 0.929 16 C 0.016 3.984 17 N -0.344 5.344 18 C 0.305 3.695 19 O -0.471 6.471 20 C -0.183 4.183 21 C -0.006 4.006 22 N -0.202 5.202 23 C -0.002 4.002 24 C -0.249 4.249 25 C -0.014 4.014 26 C -0.300 4.300 27 C 0.297 3.703 28 O -0.499 6.499 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.069 0.931 35 H 0.140 0.860 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.246 0.754 39 H 0.113 0.887 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.102 0.898 43 H 0.205 0.795 44 H 0.198 0.802 45 H 0.189 0.811 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.240 -2.599 8.223 8.713 hybrid contribution -0.098 1.510 -0.084 1.516 sum -1.338 -1.089 8.139 8.320 Atomic orbital electron populations 1.69902 1.06911 1.26867 1.55457 1.25738 0.95530 0.99799 1.00187 0.86193 0.78480 0.81507 0.77592 1.20723 1.24492 1.19088 1.18827 0.83917 0.93482 1.40328 0.91064 1.44606 1.05953 1.36268 1.47896 1.22111 0.97087 0.92947 0.91883 1.23035 0.92173 0.93346 0.93970 1.87844 1.33521 1.45782 1.63766 1.23005 0.98061 0.89735 0.91376 1.21634 0.91605 0.90122 0.94427 0.92869 1.21134 0.94648 0.94510 0.88076 1.45937 1.46661 1.12300 1.29544 1.20472 0.79159 0.86734 0.83106 1.90636 1.65830 1.16063 1.74533 1.21786 1.00697 0.99822 0.95987 1.21545 0.97224 0.94561 0.87283 1.45589 1.15061 1.47727 1.11800 1.22700 0.83016 0.91976 1.02545 1.21193 1.03774 1.07329 0.92562 1.21889 0.92377 0.89350 0.97751 1.22144 0.98672 1.09507 0.99686 1.17760 0.87061 0.82194 0.83319 1.90920 1.21305 1.54399 1.83284 0.93054 0.94672 0.91701 0.93186 0.86717 0.93096 0.85964 0.93273 0.89925 0.75364 0.88674 0.87382 0.86875 0.89757 0.79531 0.80188 0.81089 0.83313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.75 13.97 21.65 0.30 -52.45 16 2 C -0.02 -0.85 5.28 84.86 0.45 -0.40 16 3 Si 0.93 42.02 24.28 68.60 1.67 43.68 16 4 H -0.28 -12.20 6.54 99.48 0.65 -11.55 16 5 H -0.32 -14.81 7.11 99.48 0.71 -14.11 16 6 H -0.27 -11.61 6.65 99.48 0.66 -10.95 16 7 C -0.24 -11.43 7.59 84.03 0.64 -10.79 16 8 H 0.07 3.81 5.99 -2.91 -0.02 3.79 16 9 N -0.62 -25.62 2.79 -673.55 -1.88 -27.50 16 10 C 0.08 3.26 4.38 86.35 0.38 3.64 16 11 C 0.05 1.67 6.99 72.08 0.50 2.18 16 12 O -0.39 -12.49 10.74 -148.98 -1.60 -14.09 16 13 C 0.06 1.67 6.29 72.08 0.45 2.12 16 14 C 0.13 4.36 3.20 44.95 0.14 4.51 16 15 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 16 C 0.14 4.84 4.44 86.38 0.38 5.23 16 17 N -0.69 -25.14 3.80 -463.05 -1.76 -26.90 16 18 C 0.52 18.83 7.83 87.66 0.69 19.51 16 19 O -0.59 -24.17 15.98 -3.03 -0.05 -24.22 16 20 C -0.14 -4.34 6.02 29.85 0.18 -4.16 16 21 C 0.12 3.29 4.63 86.38 0.40 3.69 16 22 N -0.49 -12.55 2.58 -650.98 -1.68 -14.23 16 23 C 0.12 2.20 10.28 83.42 0.86 3.06 16 24 C -0.23 -3.04 10.01 22.08 0.22 -2.82 16 25 C 0.01 0.12 10.10 22.32 0.23 0.34 16 26 C -0.28 -6.28 9.99 22.40 0.22 -6.05 16 27 C 0.49 14.90 7.41 84.82 0.63 15.52 16 28 O -0.61 -24.05 16.63 -5.53 -0.09 -24.15 16 29 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 30 H 0.04 1.36 6.82 -2.39 -0.02 1.34 16 31 H 0.06 2.72 4.89 -2.39 -0.01 2.71 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.05 1.92 7.53 -2.39 -0.02 1.91 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.41 15.19 7.39 -92.71 -0.69 14.51 16 39 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 40 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.11 2.87 7.97 -2.38 -0.02 2.85 16 42 H 0.08 2.80 7.33 -2.39 -0.02 2.78 16 43 H 0.19 2.39 8.04 -2.91 -0.02 2.37 16 44 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 45 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 46 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -72.27 369.08 1.50 -70.77 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: 0.21 Total: 33.51 kcal Atomic # 6 Polarization: 29.21 SS G_CDS: 6.37 Total: 35.58 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -5.01 Total: -121.08 kcal Atomic # 8 Polarization: -60.72 SS G_CDS: -1.74 Total: -62.46 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.67 Total: 43.68 kcal Total: -72.27 1.50 -70.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717135867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.143 kcal (2) G-P(sol) polarization free energy of solvation -72.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds