Wall clock time and date at job start Tue Mar 31 2020 18:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86809 * 120.00005 * 2 1 4 4 H 1.48500 * 109.47100 * 269.99924 * 3 2 1 5 5 H 1.48499 * 109.47168 * 29.99877 * 3 2 1 6 6 H 1.48501 * 109.46834 * 149.99753 * 3 2 1 7 7 C 1.38814 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99197 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00284 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99843 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46861 * 180.02562 * 10 9 7 12 12 O 1.42893 * 109.46081 * 299.97351 * 11 10 9 13 13 C 1.53044 * 109.45648 * 180.02562 * 11 10 9 14 14 C 1.53188 * 109.31358 * 178.61590 * 13 11 10 15 15 N 1.46933 * 108.77708 * 54.63234 * 14 13 11 16 16 C 1.34774 * 120.63173 * 126.36792 * 15 14 13 17 17 O 1.21282 * 119.99994 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.99886 * 179.97438 * 16 15 14 19 19 O 1.42895 * 109.47288 * 180.02562 * 18 16 15 20 20 C 1.35910 * 117.00552 * 180.02562 * 19 18 16 21 21 C 1.39142 * 120.47767 * 179.97438 * 20 19 18 22 22 C 1.38536 * 118.37437 * 180.25739 * 21 20 19 23 23 C 1.38260 * 119.22082 * 359.44978 * 22 21 20 24 24 N 1.31851 * 120.88390 * 0.56717 * 23 22 21 25 25 C 1.31839 * 121.78092 * 359.71232 * 24 23 22 26 26 C 1.46931 * 118.73569 * 306.64568 * 15 14 13 27 27 C 1.52765 * 109.00922 * 53.31084 * 26 15 14 28 28 H 0.97005 * 120.00067 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00131 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.46745 * 60.00420 * 10 9 7 31 31 H 1.08999 * 109.47109 * 300.00512 * 10 9 7 32 32 H 0.96698 * 113.99946 * 60.02896 * 12 11 10 33 33 H 1.08994 * 109.50166 * 58.66149 * 13 11 10 34 34 H 1.08998 * 109.49452 * 298.56525 * 13 11 10 35 35 H 1.09002 * 109.58661 * 294.84813 * 14 13 11 36 36 H 1.08992 * 109.59177 * 174.42054 * 14 13 11 37 37 H 1.09008 * 109.47378 * 60.00420 * 18 16 15 38 38 H 1.09001 * 109.47620 * 300.00336 * 18 16 15 39 39 H 1.08002 * 120.80872 * 359.97438 * 21 20 19 40 40 H 1.08004 * 120.38746 * 179.72197 * 22 21 20 41 41 H 1.07992 * 119.55392 * 180.29921 * 23 22 21 42 42 H 1.08002 * 119.65477 * 179.97438 * 25 24 23 43 43 H 1.08997 * 109.58613 * 173.13866 * 26 15 14 44 44 H 1.08999 * 109.58956 * 293.57060 * 26 15 14 45 45 H 1.08994 * 109.56246 * 185.55605 * 27 26 15 46 46 H 1.08999 * 109.36255 * 65.49347 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0032 12 8 5.9623 -1.4429 -1.1639 13 6 6.3813 -3.5168 0.0038 14 6 7.8863 -3.2332 -0.0301 15 7 8.2247 -2.3407 1.0870 16 6 9.1947 -2.6729 1.9618 17 8 9.7978 -3.7169 1.8308 18 6 9.5305 -1.7466 3.1020 19 8 10.5832 -2.3151 3.8833 20 6 11.0083 -1.6010 4.9588 21 6 12.0291 -2.0870 5.7699 22 6 12.4244 -1.3258 6.8578 23 6 11.8048 -0.1126 7.0936 24 7 10.8402 0.3193 6.3052 25 6 10.4309 -0.3771 5.2633 26 6 7.4814 -1.0821 1.2358 27 6 5.9846 -1.3872 1.2523 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3620 0.0014 30 1 3.8491 -3.0429 -0.8876 31 1 3.8484 -3.0418 0.8924 32 1 5.5136 -0.5890 -1.2309 33 1 6.1009 -4.0990 -0.8739 34 1 6.1369 -4.0774 0.9060 35 1 8.1465 -2.7528 -0.9733 36 1 8.4368 -4.1686 0.0699 37 1 8.6488 -1.6057 3.7274 38 1 9.8522 -0.7837 2.7053 39 1 12.4985 -3.0365 5.5591 40 1 13.2105 -1.6740 7.5115 41 1 12.1121 0.4874 7.9373 42 1 9.6374 0.0092 4.6406 43 1 7.7646 -0.5988 2.1707 44 1 7.7078 -0.4227 0.3979 45 1 5.4220 -0.4538 1.2630 46 1 5.7440 -1.9679 2.1428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717323881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:08 Heat of formation + Delta-G solvation = -58.550901 kcal Electronic energy + Delta-G solvation = -28907.421162 eV Core-core repulsion = 24798.428471 eV Total energy + Delta-G solvation = -4108.992692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.19908 -40.46872 -39.00235 -38.05951 -35.79380 -34.24382 -32.90604 -32.32805 -31.63899 -30.83501 -30.78409 -28.92168 -26.92066 -24.29867 -23.81678 -23.63217 -23.20515 -21.72319 -20.57379 -19.34041 -18.91473 -18.11549 -17.55488 -17.20597 -16.92012 -16.67920 -16.05381 -15.86977 -15.25457 -14.98504 -14.85381 -14.62320 -14.36586 -14.20557 -14.09120 -13.59022 -13.54866 -13.39710 -13.20009 -12.94260 -12.71254 -12.61411 -12.50549 -12.13009 -11.95312 -11.78919 -11.49760 -11.31528 -11.27714 -10.99244 -10.39104 -10.35057 -10.16362 -10.11179 -9.83940 -9.72096 -9.64587 -9.04397 -8.92154 -8.83107 -7.39174 -5.87810 -3.25553 0.66530 0.85416 2.08227 2.24983 3.07329 3.20718 3.26698 3.35046 3.36957 3.95672 4.05512 4.23030 4.28165 4.43237 4.46016 4.47355 4.53736 4.55135 4.63505 4.72769 4.85074 4.92520 4.94823 5.08750 5.15458 5.26406 5.34260 5.42118 5.49098 5.51641 5.58950 5.66189 5.73123 5.78400 5.88721 6.00363 6.04833 6.15180 6.29646 6.44786 6.52053 6.69845 7.07674 7.51827 7.75438 7.82669 7.88376 8.29442 9.06090 9.77877 9.95198 11.30347 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014134 B = 0.002595 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.576561 B =10785.425494 C =12252.121615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.133 3.867 11 C 0.126 3.874 12 O -0.557 6.557 13 C -0.117 4.117 14 C 0.120 3.880 15 N -0.602 5.602 16 C 0.519 3.481 17 O -0.522 6.522 18 C 0.037 3.963 19 O -0.283 6.283 20 C 0.081 3.919 21 C -0.106 4.106 22 C -0.131 4.131 23 C 0.059 3.941 24 N -0.448 5.448 25 C 0.015 3.985 26 C 0.107 3.893 27 C -0.162 4.162 28 H 0.261 0.739 29 H 0.356 0.644 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.378 0.622 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.841 -1.912 9.466 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.006 3.994 11 C 0.084 3.916 12 O -0.364 6.364 13 C -0.155 4.155 14 C -0.002 4.002 15 N -0.337 5.337 16 C 0.306 3.694 17 O -0.398 6.398 18 C -0.041 4.041 19 O -0.194 6.194 20 C 0.033 3.967 21 C -0.132 4.132 22 C -0.151 4.151 23 C -0.099 4.099 24 N -0.158 5.158 25 C -0.143 4.143 26 C -0.015 4.015 27 C -0.200 4.200 28 H 0.071 0.929 29 H 0.190 0.810 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.226 0.774 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.176 0.824 42 H 0.175 0.825 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 24.962 -2.487 9.366 26.777 hybrid contribution 0.142 1.237 0.004 1.245 sum 25.104 -1.250 9.370 26.825 Atomic orbital electron populations 1.69692 1.05122 1.25944 1.57052 1.24701 0.95260 0.97220 1.01853 0.86571 0.79021 0.85083 0.77804 1.20877 1.21580 1.20582 1.19017 0.80350 0.94825 1.43526 0.89148 1.42633 1.04214 1.01700 1.91394 1.21295 0.88548 0.89874 0.99685 1.21383 0.94588 0.91280 0.84307 1.86421 1.70649 1.35495 1.43807 1.21860 0.94083 0.95840 1.03745 1.21592 0.95432 0.94702 0.88439 1.48024 1.35510 1.22078 1.28101 1.19830 0.80289 0.86719 0.82609 1.90741 1.50733 1.24686 1.73603 1.22630 0.91296 0.97202 0.92979 1.86163 1.51200 1.45039 1.37012 1.20134 0.95528 0.92331 0.88744 1.20991 0.96267 1.01627 0.94319 1.22057 1.00599 0.95346 0.97070 1.22714 0.93426 0.94807 0.98980 1.67541 1.11653 1.33405 1.03163 1.22958 1.01857 0.91992 0.97454 1.21735 0.92153 0.85221 1.02418 1.22525 0.94790 1.02791 0.99935 0.92907 0.81045 0.94339 0.94758 0.77377 0.89459 0.90131 0.90208 0.89012 0.88487 0.88633 0.83741 0.83891 0.82391 0.82482 0.90295 0.90062 0.89398 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.97 55.49 0.78 -27.55 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 20.57 27.74 -169.99 -4.71 15.85 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -5.82 6.52 56.52 0.37 -5.45 16 7 C -0.25 -6.65 10.47 -15.06 -0.16 -6.80 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 9 N -0.75 -16.09 4.87 -59.91 -0.29 -16.39 16 10 C 0.13 2.34 5.40 -4.04 -0.02 2.32 16 11 C 0.13 1.69 0.71 -90.57 -0.06 1.63 16 12 O -0.56 -7.70 11.70 -35.23 -0.41 -8.11 16 13 C -0.12 -1.37 5.11 -26.61 -0.14 -1.51 16 14 C 0.12 1.36 6.20 -3.71 -0.02 1.34 16 15 N -0.60 -6.54 2.98 -173.03 -0.52 -7.05 16 16 C 0.52 6.22 7.77 -10.99 -0.09 6.13 16 17 O -0.52 -8.26 15.91 -14.35 -0.23 -8.49 16 18 C 0.04 0.33 3.58 36.00 0.13 0.46 16 19 O -0.28 -3.16 9.68 -39.37 -0.38 -3.54 16 20 C 0.08 0.78 6.71 -39.07 -0.26 0.52 16 21 C -0.11 -0.87 10.13 -39.14 -0.40 -1.27 16 22 C -0.13 -0.86 10.11 -39.46 -0.40 -1.26 16 23 C 0.06 0.45 11.18 -17.54 -0.20 0.25 16 24 N -0.45 -4.51 10.36 -13.12 -0.14 -4.65 16 25 C 0.02 0.14 10.22 -17.37 -0.18 -0.03 16 26 C 0.11 1.01 6.08 -3.93 -0.02 0.98 16 27 C -0.16 -1.93 4.91 -26.83 -0.13 -2.06 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.36 7.13 3.44 -40.82 -0.14 6.98 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.38 5.00 7.85 45.56 0.36 5.36 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.92 7.81 -51.93 -0.41 0.51 16 36 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 37 H 0.10 0.68 7.22 -51.92 -0.37 0.30 16 38 H 0.10 0.62 7.49 -51.93 -0.39 0.23 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 41 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.16 1.12 6.32 -52.49 -0.33 0.79 16 43 H 0.08 0.53 5.93 -51.93 -0.31 0.23 16 44 H 0.08 0.74 7.81 -51.93 -0.41 0.34 16 45 H 0.09 1.15 6.82 -51.93 -0.35 0.80 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -34.81 370.96 -8.05 -42.86 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.69 Total: 10.70 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -2.04 Total: 0.78 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.17 Total: -55.64 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -1.02 Total: -20.14 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.71 Total: 15.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.81 -8.05 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717323881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.692 kcal (2) G-P(sol) polarization free energy of solvation -34.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds