Wall clock time and date at job start Tue Mar 31 2020 18:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86809 * 120.00005 * 2 1 4 4 H 1.48500 * 109.47100 * 269.99924 * 3 2 1 5 5 H 1.48499 * 109.47168 * 29.99877 * 3 2 1 6 6 H 1.48501 * 109.46834 * 149.99753 * 3 2 1 7 7 C 1.38814 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99197 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00284 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99843 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46861 * 180.02562 * 10 9 7 12 12 O 1.42893 * 109.46081 * 299.97351 * 11 10 9 13 13 C 1.53044 * 109.45648 * 180.02562 * 11 10 9 14 14 C 1.53188 * 109.31358 * 178.61590 * 13 11 10 15 15 N 1.46933 * 108.77708 * 54.63234 * 14 13 11 16 16 C 1.34774 * 120.63173 * 126.36792 * 15 14 13 17 17 O 1.21282 * 119.99994 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.99886 * 179.97438 * 16 15 14 19 19 O 1.42895 * 109.47288 * 180.02562 * 18 16 15 20 20 C 1.35910 * 117.00552 * 180.02562 * 19 18 16 21 21 C 1.39142 * 120.47767 * 179.97438 * 20 19 18 22 22 C 1.38536 * 118.37437 * 180.25739 * 21 20 19 23 23 C 1.38260 * 119.22082 * 359.44978 * 22 21 20 24 24 N 1.31851 * 120.88390 * 0.56717 * 23 22 21 25 25 C 1.31839 * 121.78092 * 359.71232 * 24 23 22 26 26 C 1.46931 * 118.73569 * 306.64568 * 15 14 13 27 27 C 1.52765 * 109.00922 * 53.31084 * 26 15 14 28 28 H 0.97005 * 120.00067 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00131 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.46745 * 60.00420 * 10 9 7 31 31 H 1.08999 * 109.47109 * 300.00512 * 10 9 7 32 32 H 0.96698 * 113.99946 * 60.02896 * 12 11 10 33 33 H 1.08994 * 109.50166 * 58.66149 * 13 11 10 34 34 H 1.08998 * 109.49452 * 298.56525 * 13 11 10 35 35 H 1.09002 * 109.58661 * 294.84813 * 14 13 11 36 36 H 1.08992 * 109.59177 * 174.42054 * 14 13 11 37 37 H 1.09008 * 109.47378 * 60.00420 * 18 16 15 38 38 H 1.09001 * 109.47620 * 300.00336 * 18 16 15 39 39 H 1.08002 * 120.80872 * 359.97438 * 21 20 19 40 40 H 1.08004 * 120.38746 * 179.72197 * 22 21 20 41 41 H 1.07992 * 119.55392 * 180.29921 * 23 22 21 42 42 H 1.08002 * 119.65477 * 179.97438 * 25 24 23 43 43 H 1.08997 * 109.58613 * 173.13866 * 26 15 14 44 44 H 1.08999 * 109.58956 * 293.57060 * 26 15 14 45 45 H 1.08994 * 109.56246 * 185.55605 * 27 26 15 46 46 H 1.08999 * 109.36255 * 65.49347 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0032 12 8 5.9623 -1.4429 -1.1639 13 6 6.3813 -3.5168 0.0038 14 6 7.8863 -3.2332 -0.0301 15 7 8.2247 -2.3407 1.0870 16 6 9.1947 -2.6729 1.9618 17 8 9.7978 -3.7169 1.8308 18 6 9.5305 -1.7466 3.1020 19 8 10.5832 -2.3151 3.8833 20 6 11.0083 -1.6010 4.9588 21 6 12.0291 -2.0870 5.7699 22 6 12.4244 -1.3258 6.8578 23 6 11.8048 -0.1126 7.0936 24 7 10.8402 0.3193 6.3052 25 6 10.4309 -0.3771 5.2633 26 6 7.4814 -1.0821 1.2358 27 6 5.9846 -1.3872 1.2523 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3620 0.0014 30 1 3.8491 -3.0429 -0.8876 31 1 3.8484 -3.0418 0.8924 32 1 5.5136 -0.5890 -1.2309 33 1 6.1009 -4.0990 -0.8739 34 1 6.1369 -4.0774 0.9060 35 1 8.1465 -2.7528 -0.9733 36 1 8.4368 -4.1686 0.0699 37 1 8.6488 -1.6057 3.7274 38 1 9.8522 -0.7837 2.7053 39 1 12.4985 -3.0365 5.5591 40 1 13.2105 -1.6740 7.5115 41 1 12.1121 0.4874 7.9373 42 1 9.6374 0.0092 4.6406 43 1 7.7646 -0.5988 2.1707 44 1 7.7078 -0.4227 0.3979 45 1 5.4220 -0.4538 1.2630 46 1 5.7440 -1.9679 2.1428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717323881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:07 Heat of formation + Delta-G solvation = -84.533182 kcal Electronic energy + Delta-G solvation = -28908.547839 eV Core-core repulsion = 24798.428471 eV Total energy + Delta-G solvation = -4110.119368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.91319 -41.29562 -39.95851 -38.85410 -36.94191 -35.86353 -33.71160 -33.46689 -32.95230 -32.05672 -31.43494 -29.77381 -28.23966 -25.44232 -24.64651 -24.55818 -24.00308 -23.10180 -21.64592 -20.24816 -20.02436 -19.54728 -18.34059 -17.83068 -17.68469 -17.38870 -17.18520 -16.78870 -16.61012 -16.07656 -16.02506 -15.67619 -15.33726 -15.07537 -14.91131 -14.81699 -14.63890 -14.43670 -14.16685 -14.13007 -13.75885 -13.56238 -13.48449 -13.19473 -13.09952 -12.84837 -12.75811 -12.52319 -12.32211 -12.21148 -12.11096 -11.88120 -11.39938 -11.06235 -11.01514 -10.77308 -10.72105 -10.44775 -9.76734 -9.52794 -9.34231 -8.02576 -5.38703 0.11382 0.25797 1.34101 1.36862 1.38928 1.45375 1.52148 2.34774 2.49499 2.79705 3.18725 3.23360 3.31606 3.44672 3.50619 3.64676 3.68781 3.80620 3.90389 3.94344 3.97540 3.98796 4.08049 4.09850 4.31103 4.35868 4.44421 4.54454 4.61354 4.65046 4.72926 4.79900 4.85225 4.95273 4.96952 5.03889 5.10449 5.13354 5.28177 5.39810 5.53378 5.73841 6.06414 6.18665 6.24997 6.72082 6.94335 6.95689 7.06402 7.77536 7.98864 9.18802 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014134 B = 0.002595 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.576561 B =10785.425494 C =12252.121615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.067 4.067 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.301 1.301 6 H -0.235 1.235 7 C -0.239 4.239 8 H 0.049 0.951 9 N -0.747 5.747 10 C 0.131 3.869 11 C 0.135 3.865 12 O -0.559 6.559 13 C -0.113 4.113 14 C 0.124 3.876 15 N -0.598 5.598 16 C 0.516 3.484 17 O -0.569 6.569 18 C 0.037 3.963 19 O -0.308 6.308 20 C 0.064 3.936 21 C -0.119 4.119 22 C -0.122 4.122 23 C 0.051 3.949 24 N -0.477 5.477 25 C 0.007 3.993 26 C 0.109 3.891 27 C -0.160 4.160 28 H 0.258 0.742 29 H 0.368 0.632 30 H 0.024 0.976 31 H 0.030 0.970 32 H 0.382 0.618 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.151 0.849 40 H 0.176 0.824 41 H 0.183 0.817 42 H 0.175 0.825 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.733 -0.052 10.651 29.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.228 1.228 6 H -0.159 1.159 7 C -0.370 4.370 8 H 0.067 0.933 9 N -0.395 5.395 10 C 0.004 3.996 11 C 0.094 3.906 12 O -0.366 6.366 13 C -0.151 4.151 14 C 0.002 3.998 15 N -0.332 5.332 16 C 0.305 3.695 17 O -0.448 6.448 18 C -0.041 4.041 19 O -0.220 6.220 20 C 0.016 3.984 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.106 4.106 24 N -0.187 5.187 25 C -0.151 4.151 26 C -0.013 4.013 27 C -0.198 4.198 28 H 0.067 0.933 29 H 0.203 0.797 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.231 0.769 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.169 0.831 40 H 0.193 0.807 41 H 0.200 0.800 42 H 0.192 0.808 43 H 0.131 0.869 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 27.896 -0.633 10.550 29.831 hybrid contribution -0.791 0.521 -0.355 1.012 sum 27.105 -0.113 10.194 28.959 Atomic orbital electron populations 1.69908 1.07539 1.26871 1.59277 1.25639 0.96186 1.01784 1.02194 0.85374 0.79138 0.78684 0.78329 1.20170 1.22771 1.15916 1.18948 0.82736 0.93306 1.41987 0.93293 1.42477 1.02308 1.03641 1.91074 1.21435 0.91384 0.88126 0.98653 1.21266 0.91476 0.92470 0.85387 1.86434 1.70420 1.35746 1.43963 1.21824 0.94275 0.95023 1.03993 1.21478 0.94636 0.94760 0.88906 1.48072 1.35248 1.22382 1.27511 1.20391 0.79662 0.86465 0.83025 1.90719 1.52448 1.26833 1.74838 1.22764 0.92022 0.97090 0.92176 1.86121 1.52017 1.46119 1.37753 1.20307 0.96394 0.92792 0.88873 1.21316 0.96218 1.02260 0.94774 1.22395 1.00644 0.94502 0.96563 1.23235 0.92767 0.95453 0.99194 1.67570 1.12889 1.34263 1.03965 1.23200 1.02336 0.91851 0.97674 1.21885 0.89989 0.84577 1.04807 1.22479 0.96652 1.02053 0.98642 0.93325 0.79744 0.95830 0.95152 0.76924 0.89381 0.89926 0.90025 0.89807 0.86202 0.85761 0.83120 0.80669 0.79987 0.80820 0.86856 0.89002 0.89846 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -61.75 13.97 21.65 0.30 -61.45 16 2 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 3 Si 0.96 41.53 27.74 68.60 1.90 43.43 16 4 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.24 -8.39 6.52 99.48 0.65 -7.74 16 7 C -0.24 -13.02 10.47 84.04 0.88 -12.14 16 8 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 9 N -0.75 -31.16 4.87 -343.44 -1.67 -32.84 16 10 C 0.13 4.52 5.40 86.38 0.47 4.98 16 11 C 0.14 3.38 0.71 -10.76 -0.01 3.37 16 12 O -0.56 -14.04 11.70 -148.98 -1.74 -15.78 16 13 C -0.11 -2.51 5.11 30.67 0.16 -2.35 16 14 C 0.12 2.64 6.20 86.36 0.54 3.18 16 15 N -0.60 -11.52 2.98 -819.73 -2.44 -13.97 16 16 C 0.52 11.43 7.77 87.66 0.68 12.11 16 17 O -0.57 -17.82 15.91 16.00 0.25 -17.56 16 18 C 0.04 0.56 3.58 71.23 0.25 0.82 16 19 O -0.31 -6.45 9.68 -73.50 -0.71 -7.16 16 20 C 0.06 1.14 6.71 22.60 0.15 1.29 16 21 C -0.12 -1.78 10.13 22.56 0.23 -1.55 16 22 C -0.12 -1.29 10.11 22.35 0.23 -1.06 16 23 C 0.05 0.66 11.18 84.70 0.95 1.61 16 24 N -0.48 -8.62 10.36 -195.44 -2.02 -10.65 16 25 C 0.01 0.11 10.22 84.80 0.87 0.98 16 26 C 0.11 1.62 6.08 86.22 0.52 2.15 16 27 C -0.16 -3.30 4.91 30.53 0.15 -3.15 16 28 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 29 H 0.37 13.66 3.44 -92.71 -0.32 13.35 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.38 8.92 7.85 -74.06 -0.58 8.34 16 33 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 1.73 7.81 -2.39 -0.02 1.71 16 36 H 0.08 1.95 7.00 -2.39 -0.02 1.94 16 37 H 0.12 1.25 7.22 -2.38 -0.02 1.23 16 38 H 0.12 1.15 7.49 -2.39 -0.02 1.13 16 39 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 41 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 42 H 0.17 1.97 6.32 -2.91 -0.02 1.95 16 43 H 0.11 0.95 5.93 -2.39 -0.01 0.94 16 44 H 0.09 1.26 7.81 -2.39 -0.02 1.24 16 45 H 0.08 1.84 6.82 -2.39 -0.02 1.83 16 46 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -78.77 370.96 0.46 -78.31 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.06 Total: 30.72 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 6.53 Total: 6.95 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -5.84 Total: -118.90 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -2.20 Total: -40.51 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.90 Total: 43.43 kcal Total: -78.77 0.46 -78.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717323881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.220 kcal (2) G-P(sol) polarization free energy of solvation -78.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds