Wall clock time and date at job start Tue Mar 31 2020 18:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27760 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27769 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27784 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.49581 * 60.00409 * 10 9 7 12 12 O 1.42899 * 109.46953 * 304.99621 * 11 10 9 13 13 C 1.53044 * 109.49284 * 180.02562 * 10 9 7 14 14 C 1.53105 * 109.50131 * 58.62520 * 13 10 9 15 15 C 1.53196 * 109.33429 * 61.33945 * 14 13 10 16 16 N 1.46932 * 108.77429 * 305.36623 * 15 14 13 17 17 C 1.34777 * 120.62979 * 233.62964 * 16 15 14 18 18 O 1.21280 * 119.99703 * 179.97438 * 17 16 15 19 19 C 1.50698 * 119.99860 * 359.97438 * 17 16 15 20 20 N 1.46500 * 109.47311 * 179.97438 * 19 17 16 21 21 C 1.35765 * 119.62533 * 269.72975 * 20 19 17 22 22 C 1.35347 * 120.70177 * 179.75848 * 21 20 19 23 23 C 1.40199 * 119.94849 * 0.50886 * 22 21 20 24 24 C 1.36403 * 119.26277 * 359.74664 * 23 22 21 25 25 C 1.34654 * 119.62499 * 89.99478 * 20 19 17 26 26 O 1.22063 * 119.98803 * 0.02562 * 25 20 19 27 27 C 1.46923 * 118.73983 * 53.60498 * 16 15 14 28 28 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 29 29 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.46897 * 64.99872 * 11 10 9 31 31 H 1.09000 * 109.46832 * 184.99463 * 11 10 9 32 32 H 0.96702 * 113.99947 * 179.97438 * 12 11 10 33 33 H 1.09005 * 109.45548 * 178.60783 * 13 10 9 34 34 H 1.08991 * 109.46646 * 298.56730 * 13 10 9 35 35 H 1.08995 * 109.48942 * 301.38046 * 14 13 10 36 36 H 1.08998 * 109.51489 * 181.30840 * 14 13 10 37 37 H 1.08992 * 109.58662 * 185.58028 * 15 14 13 38 38 H 1.09000 * 109.70205 * 65.21896 * 15 14 13 39 39 H 1.08999 * 109.47248 * 299.99830 * 19 17 16 40 40 H 1.09008 * 109.47117 * 60.00023 * 19 17 16 41 41 H 1.07997 * 119.64769 * 359.97438 * 21 20 19 42 42 H 1.07997 * 120.02660 * 180.23617 * 22 21 20 43 43 H 1.08000 * 120.36772 * 179.77058 * 23 22 21 44 44 H 1.07996 * 120.34303 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.58895 * 186.60924 * 27 16 15 46 46 H 1.08997 * 109.70453 * 66.25280 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1090 1.6934 1.2090 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 2.9426 -3.7413 1.2340 12 8 3.7919 -2.5937 1.2937 13 6 1.0638 -4.8205 -0.0109 14 6 0.1563 -4.7180 -1.2397 15 6 1.0089 -4.8102 -2.5091 16 7 2.0599 -3.7853 -2.4483 17 6 2.2205 -2.9057 -3.4568 18 8 3.0915 -2.0641 -3.3945 19 6 1.3178 -2.9682 -4.6619 20 7 1.6926 -1.9143 -5.6080 21 6 1.1066 -0.6928 -5.5187 22 6 1.4399 0.2981 -6.3782 23 6 2.3920 0.0644 -7.3805 24 6 2.9759 -1.1650 -7.4718 25 6 2.6104 -2.1696 -6.5596 26 8 3.1245 -3.2744 -6.6306 27 6 2.9321 -3.7370 -1.2670 28 1 -0.4850 0.8400 0.0040 29 1 0.3555 -2.3880 -0.0021 30 1 2.3144 -3.7752 2.1242 31 1 3.5530 -4.6430 1.1856 32 1 4.3815 -2.5801 2.0601 33 1 1.6092 -5.7639 -0.0401 34 1 0.4575 -4.7796 0.8938 35 1 -0.3708 -3.7641 -1.2240 36 1 -0.5669 -5.5334 -1.2272 37 1 0.3816 -4.6389 -3.3838 38 1 1.4652 -5.7980 -2.5743 39 1 1.4199 -3.9412 -5.1424 40 1 0.2836 -2.8241 -4.3491 41 1 0.3691 -0.5089 -4.7514 42 1 0.9697 1.2667 -6.2949 43 1 2.6603 0.8491 -8.0723 44 1 3.7117 -1.3640 -8.2369 45 1 3.5738 -2.8576 -1.3221 46 1 3.5471 -4.6360 -1.2272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724912302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:56 Heat of formation + Delta-G solvation = -48.402925 kcal Electronic energy + Delta-G solvation = -31091.283976 eV Core-core repulsion = 26982.731334 eV Total energy + Delta-G solvation = -4108.552642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.31015 -39.72041 -37.74642 -36.69960 -35.77535 -34.37644 -33.83309 -32.30737 -31.12670 -29.80048 -28.97628 -28.22739 -25.40245 -25.04930 -23.70774 -23.51974 -22.57271 -21.75279 -19.65174 -18.37280 -17.49823 -17.40869 -17.17838 -16.93708 -16.23769 -16.20339 -15.51493 -15.26936 -14.89457 -14.57872 -14.32406 -14.18488 -13.98622 -13.84450 -13.61677 -13.25739 -13.07109 -12.90885 -12.44785 -12.24459 -12.13449 -12.05338 -11.76523 -11.75286 -11.53208 -11.23857 -10.86379 -10.73407 -10.66279 -10.50268 -10.31677 -10.22086 -9.81216 -9.76644 -9.52153 -9.26199 -9.00832 -8.82917 -8.10734 -7.83345 -6.84936 -5.60847 -2.86016 0.96266 2.04162 2.62128 3.05676 3.42710 3.57079 3.58264 3.65512 3.85696 4.67752 4.71222 4.73041 4.77431 4.80433 4.95424 5.00806 5.14566 5.16143 5.28971 5.36785 5.39623 5.41411 5.45136 5.58446 5.61735 5.74649 5.82732 5.86752 5.99411 6.04681 6.06406 6.14306 6.17456 6.21416 6.31836 6.36928 6.56699 6.61432 6.72760 6.84455 7.04147 7.20319 7.83499 8.14269 8.17212 8.36237 8.57677 8.63978 9.71184 10.17800 10.54322 11.62576 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010627 B = 0.005250 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.070004 B = 5331.723161 C = 6855.776059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.024 4.024 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.290 1.290 7 C -0.192 4.192 8 H 0.090 0.910 9 N -0.702 5.702 10 C 0.188 3.812 11 C 0.075 3.925 12 O -0.536 6.536 13 C -0.115 4.115 14 C -0.132 4.132 15 C 0.109 3.891 16 N -0.590 5.590 17 C 0.510 3.490 18 O -0.516 6.516 19 C 0.072 3.928 20 N -0.475 5.475 21 C 0.155 3.845 22 C -0.240 4.240 23 C -0.011 4.011 24 C -0.251 4.251 25 C 0.520 3.480 26 O -0.560 6.560 27 C 0.112 3.888 28 H 0.249 0.751 29 H 0.381 0.619 30 H 0.038 0.962 31 H 0.024 0.976 32 H 0.352 0.648 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.164 0.836 42 H 0.145 0.855 43 H 0.132 0.868 44 H 0.145 0.855 45 H 0.103 0.897 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.706 -8.874 -7.920 12.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.217 4.217 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.217 1.217 7 C -0.323 4.323 8 H 0.108 0.892 9 N -0.342 5.342 10 C 0.094 3.906 11 C -0.006 4.006 12 O -0.339 6.339 13 C -0.153 4.153 14 C -0.170 4.170 15 C -0.015 4.015 16 N -0.323 5.323 17 C 0.295 3.705 18 O -0.391 6.391 19 C -0.054 4.054 20 N -0.185 5.185 21 C 0.028 3.972 22 C -0.263 4.263 23 C -0.033 4.033 24 C -0.273 4.273 25 C 0.323 3.677 26 O -0.443 6.443 27 C -0.013 4.013 28 H 0.058 0.942 29 H 0.216 0.784 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.196 0.804 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.182 0.818 42 H 0.162 0.838 43 H 0.150 0.850 44 H 0.162 0.838 45 H 0.121 0.879 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.111 -8.853 -8.488 12.315 hybrid contribution 0.313 0.921 0.824 1.274 sum -0.798 -7.932 -7.664 11.059 Atomic orbital electron populations 1.69649 1.04895 1.25035 1.60459 1.24620 0.95344 0.97298 1.04485 0.86334 0.78483 0.84007 0.77898 1.21439 1.22329 1.21713 1.19479 0.91866 0.83003 1.37965 0.89196 1.42397 1.05130 0.99233 1.87460 1.19966 0.90960 0.88141 0.91492 1.22738 0.92106 0.86799 0.98985 1.86965 1.54516 1.43729 1.48658 1.21632 0.97731 0.97590 0.98388 1.21875 0.97776 1.03240 0.94094 1.21696 0.89590 0.91483 0.98716 1.47666 1.33978 1.31751 1.18947 1.20245 0.85176 0.81418 0.83669 1.90750 1.34161 1.35191 1.78998 1.21876 1.00157 0.93549 0.89806 1.45051 1.34843 1.11579 1.26980 1.22075 0.94663 0.83552 0.96935 1.20610 1.05376 1.00053 1.00250 1.21411 0.91177 0.96147 0.94565 1.22003 1.07266 0.94250 1.03799 1.17108 0.79424 0.89827 0.81382 1.90918 1.54216 1.24738 1.74441 1.22139 0.92677 1.02019 0.84438 0.94177 0.78413 0.94346 0.95831 0.80359 0.91933 0.91416 0.90006 0.91272 0.90701 0.91626 0.85914 0.86285 0.81840 0.83758 0.85031 0.83758 0.87923 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -27.99 13.06 55.49 0.72 -27.26 16 2 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 3 Si 0.90 23.70 29.55 -169.99 -5.02 18.67 16 4 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 5 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 6 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 7 C -0.19 -5.22 8.06 -15.06 -0.12 -5.34 16 8 H 0.09 2.57 5.26 -52.49 -0.28 2.30 16 9 N -0.70 -16.25 4.75 -47.11 -0.22 -16.48 16 10 C 0.19 3.42 0.68 -131.69 -0.09 3.33 16 11 C 0.07 1.28 6.09 37.16 0.23 1.50 16 12 O -0.54 -10.34 10.05 -35.23 -0.35 -10.69 16 13 C -0.12 -1.62 4.77 -26.65 -0.13 -1.74 16 14 C -0.13 -1.68 5.91 -26.58 -0.16 -1.84 16 15 C 0.11 1.36 6.34 -3.71 -0.02 1.33 16 16 N -0.59 -10.19 2.89 -172.77 -0.50 -10.69 16 17 C 0.51 9.88 7.76 -10.99 -0.09 9.79 16 18 O -0.52 -12.59 15.84 5.56 0.09 -12.50 16 19 C 0.07 1.07 4.16 -5.19 -0.02 1.05 16 20 N -0.48 -7.60 2.07 -121.06 -0.25 -7.85 16 21 C 0.16 2.19 10.28 -16.84 -0.17 2.01 16 22 C -0.24 -2.96 10.01 -39.88 -0.40 -3.36 16 23 C -0.01 -0.13 10.10 -39.51 -0.40 -0.53 16 24 C -0.25 -3.64 9.99 -39.38 -0.39 -4.03 16 25 C 0.52 9.16 7.40 -15.45 -0.11 9.05 16 26 O -0.56 -11.52 16.64 4.86 0.08 -11.44 16 27 C 0.11 2.11 4.92 -3.71 -0.02 2.09 16 28 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.38 9.38 6.42 -40.82 -0.26 9.12 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.35 5.04 9.12 45.56 0.42 5.45 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.29 6.75 -51.93 -0.35 0.94 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.76 5.93 -51.93 -0.31 0.45 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.12 1.66 7.19 -51.93 -0.37 1.29 16 40 H 0.12 1.40 7.56 -51.92 -0.39 1.01 16 41 H 0.16 2.09 8.03 -52.49 -0.42 1.66 16 42 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 44 H 0.14 1.85 8.06 -52.49 -0.42 1.42 16 45 H 0.10 2.42 5.82 -51.93 -0.30 2.12 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -38.34 369.73 -7.51 -45.85 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -5.63 Total: 14.30 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: -1.99 Total: 12.51 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -0.25 Total: -62.28 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.19 Total: -34.63 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.02 Total: 18.67 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.34 -7.51 -45.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724912302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.554 kcal (2) G-P(sol) polarization free energy of solvation -38.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds