Wall clock time and date at job start Tue Mar 31 2020 18:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27760 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27769 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27784 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.49581 * 60.00409 * 10 9 7 12 12 O 1.42899 * 109.46953 * 304.99621 * 11 10 9 13 13 C 1.53044 * 109.49284 * 180.02562 * 10 9 7 14 14 C 1.53105 * 109.50131 * 58.62520 * 13 10 9 15 15 C 1.53196 * 109.33429 * 61.33945 * 14 13 10 16 16 N 1.46932 * 108.77429 * 305.36623 * 15 14 13 17 17 C 1.34777 * 120.62979 * 233.62964 * 16 15 14 18 18 O 1.21280 * 119.99703 * 179.97438 * 17 16 15 19 19 C 1.50698 * 119.99860 * 359.97438 * 17 16 15 20 20 N 1.46500 * 109.47311 * 179.97438 * 19 17 16 21 21 C 1.35765 * 119.62533 * 269.72975 * 20 19 17 22 22 C 1.35347 * 120.70177 * 179.75848 * 21 20 19 23 23 C 1.40199 * 119.94849 * 0.50886 * 22 21 20 24 24 C 1.36403 * 119.26277 * 359.74664 * 23 22 21 25 25 C 1.34654 * 119.62499 * 89.99478 * 20 19 17 26 26 O 1.22063 * 119.98803 * 0.02562 * 25 20 19 27 27 C 1.46923 * 118.73983 * 53.60498 * 16 15 14 28 28 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 29 29 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.46897 * 64.99872 * 11 10 9 31 31 H 1.09000 * 109.46832 * 184.99463 * 11 10 9 32 32 H 0.96702 * 113.99947 * 179.97438 * 12 11 10 33 33 H 1.09005 * 109.45548 * 178.60783 * 13 10 9 34 34 H 1.08991 * 109.46646 * 298.56730 * 13 10 9 35 35 H 1.08995 * 109.48942 * 301.38046 * 14 13 10 36 36 H 1.08998 * 109.51489 * 181.30840 * 14 13 10 37 37 H 1.08992 * 109.58662 * 185.58028 * 15 14 13 38 38 H 1.09000 * 109.70205 * 65.21896 * 15 14 13 39 39 H 1.08999 * 109.47248 * 299.99830 * 19 17 16 40 40 H 1.09008 * 109.47117 * 60.00023 * 19 17 16 41 41 H 1.07997 * 119.64769 * 359.97438 * 21 20 19 42 42 H 1.07997 * 120.02660 * 180.23617 * 22 21 20 43 43 H 1.08000 * 120.36772 * 179.77058 * 23 22 21 44 44 H 1.07996 * 120.34303 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.58895 * 186.60924 * 27 16 15 46 46 H 1.08997 * 109.70453 * 66.25280 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1090 1.6934 1.2090 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 2.9426 -3.7413 1.2340 12 8 3.7919 -2.5937 1.2937 13 6 1.0638 -4.8205 -0.0109 14 6 0.1563 -4.7180 -1.2397 15 6 1.0089 -4.8102 -2.5091 16 7 2.0599 -3.7853 -2.4483 17 6 2.2205 -2.9057 -3.4568 18 8 3.0915 -2.0641 -3.3945 19 6 1.3178 -2.9682 -4.6619 20 7 1.6926 -1.9143 -5.6080 21 6 1.1066 -0.6928 -5.5187 22 6 1.4399 0.2981 -6.3782 23 6 2.3920 0.0644 -7.3805 24 6 2.9759 -1.1650 -7.4718 25 6 2.6104 -2.1696 -6.5596 26 8 3.1245 -3.2744 -6.6306 27 6 2.9321 -3.7370 -1.2670 28 1 -0.4850 0.8400 0.0040 29 1 0.3555 -2.3880 -0.0021 30 1 2.3144 -3.7752 2.1242 31 1 3.5530 -4.6430 1.1856 32 1 4.3815 -2.5801 2.0601 33 1 1.6092 -5.7639 -0.0401 34 1 0.4575 -4.7796 0.8938 35 1 -0.3708 -3.7641 -1.2240 36 1 -0.5669 -5.5334 -1.2272 37 1 0.3816 -4.6389 -3.3838 38 1 1.4652 -5.7980 -2.5743 39 1 1.4199 -3.9412 -5.1424 40 1 0.2836 -2.8241 -4.3491 41 1 0.3691 -0.5089 -4.7514 42 1 0.9697 1.2667 -6.2949 43 1 2.6603 0.8491 -8.0723 44 1 3.7117 -1.3640 -8.2369 45 1 3.5738 -2.8576 -1.3221 46 1 3.5471 -4.6360 -1.2272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724912302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:55 Heat of formation + Delta-G solvation = -78.289259 kcal Electronic energy + Delta-G solvation = -31092.579945 eV Core-core repulsion = 26982.731334 eV Total energy + Delta-G solvation = -4109.848611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.51652 -41.08411 -39.22909 -37.95873 -37.17886 -35.63335 -35.43888 -33.96548 -32.54549 -30.95895 -30.60831 -29.61298 -26.67898 -26.36225 -25.51241 -24.82279 -23.74641 -22.95801 -21.03445 -19.79640 -19.23470 -18.67988 -18.38036 -18.24385 -17.79701 -17.40544 -16.89583 -16.69956 -16.25133 -16.10138 -15.73414 -15.59390 -15.36847 -15.18507 -15.02674 -14.70795 -14.51619 -14.18795 -13.79722 -13.55028 -13.46931 -13.27889 -13.12489 -12.97423 -12.89963 -12.77085 -12.72800 -12.57855 -12.08301 -11.91759 -11.79266 -11.48478 -11.34455 -11.29742 -11.09661 -10.88494 -10.61162 -10.57798 -9.55403 -9.00392 -8.78910 -7.78594 -4.98796 -0.11719 0.90249 1.41573 1.43962 1.46815 1.51049 1.63028 2.14697 2.65240 2.70447 3.37945 3.49546 3.63089 3.68752 3.71859 3.89490 3.93408 4.00628 4.06644 4.10465 4.17172 4.21258 4.33219 4.33597 4.47406 4.52272 4.59180 4.63933 4.77717 4.82275 4.93171 4.99203 5.02225 5.05870 5.15576 5.19244 5.33799 5.42742 5.53871 5.59257 5.67796 5.94859 6.04127 6.45615 6.48231 6.92718 7.14170 7.21940 7.55807 8.22448 8.48153 9.44982 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010627 B = 0.005250 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.070004 B = 5331.723161 C = 6855.776059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.082 4.082 3 Si 0.941 3.059 4 H -0.303 1.303 5 H -0.295 1.295 6 H -0.290 1.290 7 C -0.163 4.163 8 H 0.073 0.927 9 N -0.705 5.705 10 C 0.177 3.823 11 C 0.073 3.927 12 O -0.572 6.572 13 C -0.110 4.110 14 C -0.126 4.126 15 C 0.100 3.900 16 N -0.590 5.590 17 C 0.495 3.505 18 O -0.582 6.582 19 C 0.077 3.923 20 N -0.479 5.479 21 C 0.129 3.871 22 C -0.231 4.231 23 C 0.008 3.992 24 C -0.277 4.277 25 C 0.500 3.500 26 O -0.608 6.608 27 C 0.116 3.884 28 H 0.241 0.759 29 H 0.373 0.627 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.372 0.628 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.152 0.848 41 H 0.173 0.827 42 H 0.175 0.825 43 H 0.175 0.825 44 H 0.155 0.845 45 H 0.047 0.953 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.780 -10.402 -8.359 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.272 4.272 3 Si 0.775 3.225 4 H -0.232 1.232 5 H -0.221 1.221 6 H -0.217 1.217 7 C -0.296 4.296 8 H 0.091 0.909 9 N -0.345 5.345 10 C 0.086 3.914 11 C -0.008 4.008 12 O -0.378 6.378 13 C -0.148 4.148 14 C -0.164 4.164 15 C -0.021 4.021 16 N -0.321 5.321 17 C 0.282 3.718 18 O -0.462 6.462 19 C -0.048 4.048 20 N -0.187 5.187 21 C 0.003 3.997 22 C -0.253 4.253 23 C -0.014 4.014 24 C -0.298 4.298 25 C 0.305 3.695 26 O -0.496 6.496 27 C -0.009 4.009 28 H 0.050 0.950 29 H 0.207 0.793 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.220 0.780 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.155 0.845 40 H 0.169 0.831 41 H 0.190 0.810 42 H 0.193 0.807 43 H 0.192 0.808 44 H 0.172 0.828 45 H 0.066 0.934 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.203 -10.429 -8.890 13.879 hybrid contribution 0.724 1.330 0.994 1.812 sum -1.478 -9.099 -7.896 12.137 Atomic orbital electron populations 1.69730 1.05297 1.24607 1.63069 1.25053 0.96044 0.99184 1.06962 0.85663 0.77393 0.82459 0.76979 1.23173 1.22095 1.21687 1.19492 0.91225 0.84559 1.34331 0.90886 1.42452 1.04814 1.00036 1.87158 1.20393 0.91913 0.87629 0.91497 1.22761 0.92357 0.87525 0.98114 1.86876 1.55430 1.45256 1.50195 1.21655 0.97125 0.96848 0.99194 1.21850 0.98018 1.03070 0.93458 1.22125 0.88829 0.91340 0.99850 1.47875 1.34462 1.32079 1.17734 1.21081 0.84936 0.80739 0.85018 1.90708 1.36972 1.37956 1.80549 1.21981 1.00502 0.94298 0.87997 1.45089 1.34606 1.12397 1.26620 1.22475 0.95547 0.83549 0.98148 1.21135 1.04456 1.00641 0.99058 1.21863 0.89278 0.95959 0.94262 1.22163 1.08686 0.94800 1.04159 1.17660 0.79560 0.90054 0.82207 1.90864 1.56190 1.26474 1.76032 1.21939 0.92819 1.00669 0.85501 0.94974 0.79303 0.94179 0.92061 0.78027 0.88402 0.91198 0.93355 0.87112 0.88190 0.88518 0.84520 0.83089 0.81021 0.80723 0.80770 0.82782 0.93390 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.41 13.06 21.65 0.28 -58.13 16 2 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 3 Si 0.94 50.10 29.55 68.60 2.03 52.12 16 4 H -0.30 -16.73 7.11 99.48 0.71 -16.02 16 5 H -0.29 -15.41 7.11 99.48 0.71 -14.70 16 6 H -0.29 -15.14 7.11 99.48 0.71 -14.44 16 7 C -0.16 -9.09 8.06 84.03 0.68 -8.41 16 8 H 0.07 4.33 5.26 -2.91 -0.02 4.32 16 9 N -0.71 -32.78 4.75 -302.96 -1.44 -34.22 16 10 C 0.18 6.21 0.68 3.68 0.00 6.21 16 11 C 0.07 2.35 6.09 71.98 0.44 2.79 16 12 O -0.57 -22.01 10.05 -148.98 -1.50 -23.51 16 13 C -0.11 -2.71 4.77 30.64 0.15 -2.56 16 14 C -0.13 -2.78 5.91 30.70 0.18 -2.60 16 15 C 0.10 2.16 6.34 86.36 0.55 2.71 16 16 N -0.59 -19.84 2.89 -818.91 -2.37 -22.21 16 17 C 0.50 19.48 7.76 87.66 0.68 20.16 16 18 O -0.58 -29.81 15.84 -3.03 -0.05 -29.86 16 19 C 0.08 2.27 4.16 85.63 0.36 2.63 16 20 N -0.48 -15.37 2.07 -655.07 -1.36 -16.73 16 21 C 0.13 3.57 10.28 83.42 0.86 4.43 16 22 C -0.23 -5.22 10.01 22.08 0.22 -5.00 16 23 C 0.01 0.17 10.10 22.32 0.23 0.40 16 24 C -0.28 -7.90 9.99 22.40 0.22 -7.67 16 25 C 0.50 17.98 7.40 84.82 0.63 18.60 16 26 O -0.61 -25.92 16.64 -5.52 -0.09 -26.01 16 27 C 0.12 4.31 4.92 86.36 0.42 4.74 16 28 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.37 18.48 6.42 -92.71 -0.60 17.88 16 30 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.37 10.50 9.12 -74.06 -0.68 9.83 16 33 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.43 6.75 -2.39 -0.02 1.41 16 36 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 1.67 5.93 -2.39 -0.01 1.66 16 38 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.14 3.59 7.19 -2.39 -0.02 3.57 16 40 H 0.15 3.33 7.56 -2.38 -0.02 3.31 16 41 H 0.17 4.32 8.03 -2.91 -0.02 4.30 16 42 H 0.18 2.85 8.06 -2.91 -0.02 2.83 16 43 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 44 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 45 H 0.05 2.34 5.82 -2.39 -0.01 2.33 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -90.21 369.73 1.34 -88.87 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.25 Total: 37.64 kcal Atomic # 6 Polarization: 25.97 SS G_CDS: 6.08 Total: 32.04 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -4.88 Total: -131.30 kcal Atomic # 8 Polarization: -77.75 SS G_CDS: -1.64 Total: -79.38 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.03 Total: 52.12 kcal Total: -90.21 1.34 -88.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724912302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.580 kcal (2) G-P(sol) polarization free energy of solvation -90.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds