Wall clock time and date at job start Tue Mar 31 2020 18:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46738 * 270.00043 * 3 2 1 5 5 H 1.48496 * 109.46954 * 29.99948 * 3 2 1 6 6 H 1.48498 * 109.47186 * 150.00562 * 3 2 1 7 7 C 1.38951 * 120.00424 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00309 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99701 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99918 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99957 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00236 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47608 * 179.97438 * 12 10 9 14 14 C 1.46899 * 111.00315 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46879 * 180.02562 * 14 13 12 16 16 H 1.08991 * 110.91846 * 57.44963 * 15 14 13 17 17 C 1.55156 * 111.00472 * 293.54709 * 15 14 13 18 18 C 1.54323 * 102.94226 * 206.42884 * 17 15 14 19 19 N 1.47016 * 107.27328 * 22.19229 * 18 17 15 20 20 C 1.34778 * 125.65268 * 181.02747 * 19 18 17 21 21 O 1.21272 * 120.00307 * 180.02562 * 20 19 18 22 22 C 1.50699 * 119.99466 * 0.02562 * 20 19 18 23 23 C 1.50702 * 109.47038 * 180.02562 * 22 20 19 24 24 C 1.34512 * 125.79146 * 90.00112 * 23 22 20 25 25 C 1.41376 * 106.84688 * 179.75198 * 24 23 22 26 26 C 1.34517 * 106.83881 * 0.37683 * 25 24 23 27 27 O 1.34305 * 125.78962 * 269.98334 * 23 22 20 28 28 C 1.47431 * 108.70382 * 1.28761 * 19 18 17 29 29 H 0.96999 * 120.00060 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00376 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47539 * 59.99284 * 12 10 9 32 32 H 1.09007 * 109.46683 * 299.99709 * 12 10 9 33 33 H 1.00906 * 110.99395 * 56.04015 * 13 12 10 34 34 H 1.09005 * 109.46737 * 60.00563 * 14 13 12 35 35 H 1.09002 * 109.47060 * 300.00124 * 14 13 12 36 36 H 1.08995 * 110.72210 * 88.05954 * 17 15 14 37 37 H 1.09007 * 110.72088 * 324.78660 * 17 15 14 38 38 H 1.09002 * 109.88022 * 262.77672 * 18 17 15 39 39 H 1.08996 * 110.01031 * 141.68377 * 18 17 15 40 40 H 1.09002 * 109.46950 * 60.00946 * 22 20 19 41 41 H 1.08998 * 109.47930 * 300.00038 * 22 20 19 42 42 H 1.08006 * 126.57600 * 359.95998 * 24 23 22 43 43 H 1.07998 * 126.58562 * 180.23597 * 25 24 23 44 44 H 1.08002 * 125.79423 * 179.89440 * 26 25 24 45 45 H 1.09002 * 110.36370 * 94.48385 * 28 19 18 46 46 H 1.08997 * 110.36719 * 216.80422 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5457 1.4403 0.6999 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2441 -4.8629 -0.0034 13 7 2.1986 -5.9795 -0.0036 14 6 1.4984 -7.2708 -0.0047 15 6 2.5234 -8.4067 -0.0043 16 1 3.1901 -8.3290 0.8544 17 6 3.3267 -8.4314 -1.3315 18 6 3.7491 -9.9108 -1.4524 19 7 2.8143 -10.6997 -0.6368 20 6 2.8569 -12.0357 -0.4641 21 8 2.0302 -12.5837 0.2337 22 6 3.9320 -12.8486 -1.1383 23 6 3.7568 -14.3034 -0.7865 24 6 3.0198 -15.1954 -1.4724 25 6 3.1406 -16.4319 -0.7977 26 6 3.9375 -16.2197 0.2651 27 8 4.3103 -14.9294 0.2650 28 6 1.8187 -9.7882 -0.0440 29 1 -0.4850 0.8400 0.0004 30 1 0.3536 -2.3907 -0.0016 31 1 0.6183 -4.9202 -0.8940 32 1 0.6164 -4.9213 0.8860 33 1 2.8329 -5.9130 0.7783 34 1 0.8740 -7.3448 -0.8951 35 1 0.8731 -7.3458 0.8850 36 1 4.2016 -7.7848 -1.2649 37 1 2.6943 -8.1412 -2.1706 38 1 4.7652 -10.0379 -1.0789 39 1 3.6940 -10.2306 -2.4929 40 1 4.9107 -12.5080 -0.8003 41 1 3.8575 -12.7250 -2.2187 42 1 2.4484 -15.0045 -2.3688 43 1 2.6795 -17.3669 -1.0799 44 1 4.2315 -16.9620 0.9924 45 1 0.9262 -9.7436 -0.6681 46 1 1.5615 -10.1115 0.9647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731676280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:05 Heat of formation + Delta-G solvation = -52.017266 kcal Electronic energy + Delta-G solvation = -27242.985134 eV Core-core repulsion = 23134.275762 eV Total energy + Delta-G solvation = -4108.709372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.84918 -40.33371 -38.43978 -37.87259 -35.41499 -33.88955 -33.50057 -32.70700 -31.70427 -31.19361 -29.68768 -27.99950 -26.80334 -24.84236 -23.49789 -22.93933 -22.04991 -21.07209 -20.62796 -19.58098 -19.21648 -17.90903 -17.65246 -17.60909 -16.72793 -16.15051 -15.92286 -15.80933 -15.39192 -14.86653 -14.64452 -14.59266 -14.40061 -13.99487 -13.74329 -13.53513 -13.33400 -13.11543 -13.03562 -12.97055 -12.90607 -12.68944 -12.25532 -12.11729 -11.77558 -11.68360 -11.55002 -11.20738 -11.11093 -10.97029 -10.81773 -10.40788 -10.26707 -10.23247 -10.16662 -9.52458 -8.96297 -8.76690 -8.48963 -8.09495 -7.97632 -6.43245 -3.84207 1.38998 2.27868 2.28262 2.56279 2.85341 3.16783 3.25578 3.31231 3.88602 3.94705 4.13252 4.20924 4.32928 4.36856 4.55362 4.63057 4.71648 4.81876 4.88009 4.91241 4.95830 5.09182 5.12847 5.19136 5.25024 5.39706 5.45099 5.50410 5.54555 5.61244 5.66500 5.75347 5.76987 5.80979 5.91645 5.95483 6.03449 6.15031 6.20256 6.24492 6.83217 7.14642 7.16929 7.53656 7.60821 7.81488 8.04657 8.59507 9.16267 9.52705 10.03932 10.74429 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.051303 B = 0.001463 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.648878 B =19140.034264 C =19363.409647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.666 5.666 14 C 0.069 3.931 15 C -0.097 4.097 16 H 0.086 0.914 17 C -0.114 4.114 18 C 0.093 3.907 19 N -0.618 5.618 20 C 0.529 3.471 21 O -0.531 6.531 22 C -0.056 4.056 23 C 0.004 3.996 24 C -0.196 4.196 25 C -0.214 4.214 26 C -0.038 4.038 27 O -0.173 6.173 28 C 0.112 3.888 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.349 0.651 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.203 0.797 45 H 0.071 0.929 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.692 -28.229 -3.400 28.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.298 5.298 14 C -0.061 4.061 15 C -0.117 4.117 16 H 0.104 0.896 17 C -0.151 4.151 18 C -0.030 4.030 19 N -0.353 5.353 20 C 0.317 3.683 21 O -0.407 6.407 22 C -0.096 4.096 23 C -0.046 4.046 24 C -0.215 4.215 25 C -0.233 4.233 26 C -0.105 4.105 27 O -0.069 6.069 28 C -0.011 4.011 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.168 0.832 34 H 0.093 0.907 35 H 0.049 0.951 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.130 0.870 41 H 0.141 0.859 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.219 0.781 45 H 0.090 0.910 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.209 -28.284 -3.483 28.970 hybrid contribution -0.771 0.680 0.740 1.267 sum 4.439 -27.604 -2.743 28.093 Atomic orbital electron populations 1.69612 1.05946 1.28175 1.50552 1.25262 0.95626 0.99726 0.97285 0.85856 0.79219 0.80797 0.78408 1.20382 1.20940 1.19427 1.19706 0.93378 0.82244 1.47653 0.87911 1.41867 1.09211 1.04623 1.64316 1.19802 0.88381 0.84719 0.84498 1.90518 1.13754 1.87076 1.55467 1.21669 0.94342 0.90945 1.01241 1.60061 1.18825 0.99717 1.51239 1.21866 0.94818 0.88569 1.00829 1.22380 0.97468 0.92717 0.99123 0.89604 1.22576 1.01641 0.93252 0.97676 1.22256 0.93229 0.92415 0.95090 1.48477 1.31287 1.05661 1.49845 1.20027 0.85983 0.80743 0.81587 1.90755 1.40802 1.70019 1.39122 1.20057 1.00118 0.86764 1.02659 1.21474 0.99994 0.94129 0.89050 1.21529 1.03591 0.92975 1.03382 1.21806 1.04108 0.99543 0.97821 1.24017 1.01550 0.83498 1.01481 1.83990 1.58846 1.21839 1.42191 1.22288 0.91418 0.88056 0.99294 0.91864 0.77459 0.89597 0.93865 0.83170 0.90688 0.95099 0.88925 0.90057 0.91146 0.91146 0.86976 0.85863 0.83582 0.83429 0.78079 0.91030 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.83 29.55 -169.99 -5.02 15.80 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.06 5.29 -10.96 -0.06 -14.11 16 10 C 0.44 10.12 7.82 -10.99 -0.09 10.04 16 11 O -0.58 -15.44 15.78 5.55 0.09 -15.35 16 12 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 13 N -0.67 -9.76 5.95 -115.05 -0.68 -10.44 16 14 C 0.07 0.75 5.13 -3.82 -0.02 0.73 16 15 C -0.10 -0.90 3.24 -88.35 -0.29 -1.19 16 16 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 17 C -0.11 -0.96 6.25 -24.90 -0.16 -1.11 16 18 C 0.09 0.63 6.48 -3.07 -0.02 0.61 16 19 N -0.62 -5.69 3.32 -170.38 -0.57 -6.26 16 20 C 0.53 5.69 7.84 -10.99 -0.09 5.60 16 21 O -0.53 -8.03 16.29 5.56 0.09 -7.94 16 22 C -0.06 -0.42 5.43 -29.03 -0.16 -0.58 16 23 C 0.00 0.04 5.81 -35.62 -0.21 -0.17 16 24 C -0.20 -1.84 10.81 -39.71 -0.43 -2.27 16 25 C -0.21 -1.81 10.91 -39.70 -0.43 -2.25 16 26 C -0.04 -0.31 12.09 29.42 0.36 0.04 16 27 O -0.17 -1.85 10.65 5.68 0.06 -1.79 16 28 C 0.11 1.07 6.38 -2.40 -0.02 1.05 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.35 5.35 8.43 -39.29 -0.33 5.02 16 34 H 0.07 0.78 8.11 -51.93 -0.42 0.35 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.71 8.01 -51.92 -0.42 0.30 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 43 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.20 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 46 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 LS Contribution 392.18 15.07 5.91 5.91 Total: -1.00 -35.09 392.18 -8.18 -43.27 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -6.91 Total: 11.09 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.81 Total: 3.41 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.58 Total: -54.39 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: 0.24 Total: -25.09 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.09 -8.18 -43.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731676280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.751 kcal (2) G-P(sol) polarization free energy of solvation -35.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds