Wall clock time and date at job start Tue Mar 31 2020 18:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46738 * 270.00043 * 3 2 1 5 5 H 1.48496 * 109.46954 * 29.99948 * 3 2 1 6 6 H 1.48498 * 109.47186 * 150.00562 * 3 2 1 7 7 C 1.38951 * 120.00424 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00309 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99701 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99918 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99957 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00236 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47608 * 179.97438 * 12 10 9 14 14 C 1.46899 * 111.00315 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46879 * 180.02562 * 14 13 12 16 16 H 1.08991 * 110.91846 * 57.44963 * 15 14 13 17 17 C 1.55156 * 111.00472 * 293.54709 * 15 14 13 18 18 C 1.54323 * 102.94226 * 206.42884 * 17 15 14 19 19 N 1.47016 * 107.27328 * 22.19229 * 18 17 15 20 20 C 1.34778 * 125.65268 * 181.02747 * 19 18 17 21 21 O 1.21272 * 120.00307 * 180.02562 * 20 19 18 22 22 C 1.50699 * 119.99466 * 0.02562 * 20 19 18 23 23 C 1.50702 * 109.47038 * 180.02562 * 22 20 19 24 24 C 1.34512 * 125.79146 * 90.00112 * 23 22 20 25 25 C 1.41376 * 106.84688 * 179.75198 * 24 23 22 26 26 C 1.34517 * 106.83881 * 0.37683 * 25 24 23 27 27 O 1.34305 * 125.78962 * 269.98334 * 23 22 20 28 28 C 1.47431 * 108.70382 * 1.28761 * 19 18 17 29 29 H 0.96999 * 120.00060 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00376 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47539 * 59.99284 * 12 10 9 32 32 H 1.09007 * 109.46683 * 299.99709 * 12 10 9 33 33 H 1.00906 * 110.99395 * 56.04015 * 13 12 10 34 34 H 1.09005 * 109.46737 * 60.00563 * 14 13 12 35 35 H 1.09002 * 109.47060 * 300.00124 * 14 13 12 36 36 H 1.08995 * 110.72210 * 88.05954 * 17 15 14 37 37 H 1.09007 * 110.72088 * 324.78660 * 17 15 14 38 38 H 1.09002 * 109.88022 * 262.77672 * 18 17 15 39 39 H 1.08996 * 110.01031 * 141.68377 * 18 17 15 40 40 H 1.09002 * 109.46950 * 60.00946 * 22 20 19 41 41 H 1.08998 * 109.47930 * 300.00038 * 22 20 19 42 42 H 1.08006 * 126.57600 * 359.95998 * 24 23 22 43 43 H 1.07998 * 126.58562 * 180.23597 * 25 24 23 44 44 H 1.08002 * 125.79423 * 179.89440 * 26 25 24 45 45 H 1.09002 * 110.36370 * 94.48385 * 28 19 18 46 46 H 1.08997 * 110.36719 * 216.80422 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5457 1.4403 0.6999 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2441 -4.8629 -0.0034 13 7 2.1986 -5.9795 -0.0036 14 6 1.4984 -7.2708 -0.0047 15 6 2.5234 -8.4067 -0.0043 16 1 3.1901 -8.3290 0.8544 17 6 3.3267 -8.4314 -1.3315 18 6 3.7491 -9.9108 -1.4524 19 7 2.8143 -10.6997 -0.6368 20 6 2.8569 -12.0357 -0.4641 21 8 2.0302 -12.5837 0.2337 22 6 3.9320 -12.8486 -1.1383 23 6 3.7568 -14.3034 -0.7865 24 6 3.0198 -15.1954 -1.4724 25 6 3.1406 -16.4319 -0.7977 26 6 3.9375 -16.2197 0.2651 27 8 4.3103 -14.9294 0.2650 28 6 1.8187 -9.7882 -0.0440 29 1 -0.4850 0.8400 0.0004 30 1 0.3536 -2.3907 -0.0016 31 1 0.6183 -4.9202 -0.8940 32 1 0.6164 -4.9213 0.8860 33 1 2.8329 -5.9130 0.7783 34 1 0.8740 -7.3448 -0.8951 35 1 0.8731 -7.3458 0.8850 36 1 4.2016 -7.7848 -1.2649 37 1 2.6943 -8.1412 -2.1706 38 1 4.7652 -10.0379 -1.0789 39 1 3.6940 -10.2306 -2.4929 40 1 4.9107 -12.5080 -0.8003 41 1 3.8575 -12.7250 -2.2187 42 1 2.4484 -15.0045 -2.3688 43 1 2.6795 -17.3669 -1.0799 44 1 4.2315 -16.9620 0.9924 45 1 0.9262 -9.7436 -0.6681 46 1 1.5615 -10.1115 0.9647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731676280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:04 Heat of formation + Delta-G solvation = -77.523785 kcal Electronic energy + Delta-G solvation = -27244.091179 eV Core-core repulsion = 23134.275762 eV Total energy + Delta-G solvation = -4109.815418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.49400 -41.10854 -40.12772 -38.85470 -36.61751 -35.79164 -34.18307 -33.48925 -33.22438 -32.45005 -30.42122 -28.98792 -27.89511 -26.38578 -24.58842 -23.81848 -22.69485 -21.74004 -21.49853 -20.92191 -20.28358 -19.87652 -18.37058 -18.27794 -17.87468 -17.19819 -16.91109 -16.87188 -16.47310 -16.34174 -15.95677 -15.61129 -15.28245 -15.23711 -15.08488 -14.65040 -14.23064 -14.07059 -13.75388 -13.74667 -13.62678 -13.54072 -13.45850 -13.38568 -13.15859 -12.82830 -12.72147 -12.60833 -12.40517 -12.12328 -12.00699 -11.81711 -11.55386 -11.48587 -11.12003 -10.83352 -10.32203 -9.99827 -9.70323 -9.40270 -9.29113 -8.45358 -5.94028 0.73716 1.39326 1.43192 1.51603 1.55697 1.63954 1.93580 2.07636 2.21674 2.30565 2.90539 3.22340 3.39219 3.56354 3.67925 3.69795 3.87411 4.01439 4.12542 4.13847 4.31848 4.32364 4.36122 4.40454 4.42852 4.45562 4.55100 4.59430 4.62419 4.76788 4.79991 4.90962 4.94365 5.00224 5.06747 5.15449 5.22413 5.33205 5.42330 5.42996 5.61060 5.89804 6.11412 6.19247 6.40862 6.45423 6.61715 7.04546 7.14223 7.58414 8.13460 8.71973 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.051303 B = 0.001463 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.648878 B =19140.034264 C =19363.409647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.334 4.334 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.438 3.562 11 O -0.622 6.622 12 C 0.065 3.935 13 N -0.675 5.675 14 C 0.073 3.927 15 C -0.090 4.090 16 H 0.081 0.919 17 C -0.112 4.112 18 C 0.094 3.906 19 N -0.616 5.616 20 C 0.524 3.476 21 O -0.585 6.585 22 C -0.050 4.050 23 C -0.018 4.018 24 C -0.211 4.211 25 C -0.229 4.229 26 C -0.045 4.045 27 O -0.195 6.195 28 C 0.113 3.887 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.344 0.656 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.133 0.867 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.167 0.833 44 H 0.234 0.766 45 H 0.076 0.924 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.936 -28.862 -4.290 29.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.098 0.902 9 N -0.212 5.212 10 C 0.226 3.774 11 O -0.508 6.508 12 C -0.068 4.068 13 N -0.307 5.307 14 C -0.056 4.056 15 C -0.109 4.109 16 H 0.100 0.900 17 C -0.150 4.150 18 C -0.027 4.027 19 N -0.349 5.349 20 C 0.314 3.686 21 O -0.465 6.465 22 C -0.088 4.088 23 C -0.069 4.069 24 C -0.230 4.230 25 C -0.248 4.248 26 C -0.112 4.112 27 O -0.092 6.092 28 C -0.010 4.010 29 H 0.086 0.914 30 H 0.230 0.770 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.162 0.838 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.151 0.849 41 H 0.173 0.827 42 H 0.176 0.824 43 H 0.185 0.815 44 H 0.250 0.750 45 H 0.094 0.906 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.446 -28.915 -4.398 29.750 hybrid contribution -0.857 0.811 1.024 1.562 sum 4.589 -28.104 -3.375 28.676 Atomic orbital electron populations 1.69672 1.06839 1.29252 1.50416 1.26024 0.96511 1.02386 0.96297 0.84936 0.77892 0.76928 0.78639 1.19646 1.19670 1.19740 1.19678 0.92739 0.84070 1.49891 0.90247 1.41945 1.09337 1.04762 1.65136 1.20895 0.88276 0.86162 0.82082 1.90487 1.15797 1.87968 1.56580 1.21527 0.94044 0.88117 1.03064 1.60061 1.18864 1.00576 1.51195 1.21909 0.95104 0.86991 1.01621 1.22253 0.97102 0.91937 0.99644 0.90024 1.22540 1.01118 0.94379 0.96921 1.22404 0.93318 0.90791 0.96218 1.48557 1.31357 1.05474 1.49528 1.20612 0.85985 0.81059 0.80927 1.90726 1.43054 1.71073 1.41623 1.20183 0.99608 0.84907 1.04147 1.21966 1.00484 0.95320 0.89086 1.21881 1.03590 0.93511 1.03996 1.22174 1.04419 1.00184 0.97976 1.24754 1.01079 0.83264 1.02065 1.83978 1.59506 1.22930 1.42799 1.22219 0.91901 0.88142 0.98726 0.91351 0.77009 0.87692 0.91826 0.83799 0.89734 0.94342 0.89693 0.90150 0.89449 0.88612 0.84941 0.82673 0.82426 0.81512 0.74952 0.90563 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.25 13.05 21.66 0.28 -48.97 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -28.95 5.29 -306.99 -1.62 -30.57 16 10 C 0.44 20.19 7.82 87.66 0.69 20.87 16 11 O -0.62 -33.41 15.78 -3.05 -0.05 -33.46 16 12 C 0.06 2.08 6.17 85.56 0.53 2.61 16 13 N -0.67 -18.94 5.95 -517.92 -3.08 -22.02 16 14 C 0.07 1.45 5.13 86.30 0.44 1.89 16 15 C -0.09 -1.54 3.24 -9.32 -0.03 -1.57 16 16 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 17 C -0.11 -1.67 6.25 31.78 0.20 -1.47 16 18 C 0.09 1.02 6.48 86.73 0.56 1.58 16 19 N -0.62 -10.37 3.32 -811.36 -2.70 -13.07 16 20 C 0.52 10.78 7.84 87.66 0.69 11.47 16 21 O -0.58 -17.92 16.29 -3.01 -0.05 -17.96 16 22 C -0.05 -0.65 5.43 29.10 0.16 -0.49 16 23 C -0.02 -0.35 5.81 24.83 0.14 -0.21 16 24 C -0.21 -3.81 10.81 22.19 0.24 -3.57 16 25 C -0.23 -3.68 10.91 22.19 0.24 -3.44 16 26 C -0.04 -0.70 12.09 66.97 0.81 0.11 16 27 O -0.20 -4.12 10.65 -2.58 -0.03 -4.15 16 28 C 0.11 2.05 6.38 86.93 0.55 2.60 16 29 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 30 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 31 H 0.11 3.01 8.14 -2.38 -0.02 2.99 16 32 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.34 10.33 8.43 -89.69 -0.76 9.57 16 34 H 0.08 1.55 8.11 -2.38 -0.02 1.53 16 35 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.23 8.01 -2.38 -0.02 1.21 16 38 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 43 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 44 H 0.23 1.66 8.06 -2.91 -0.02 1.64 16 45 H 0.08 1.31 8.04 -2.39 -0.02 1.29 16 46 H 0.06 1.34 8.03 -2.39 -0.02 1.32 16 Total: -1.00 -77.73 392.18 0.81 -76.92 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -0.48 Total: 36.56 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 6.50 Total: 12.24 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -7.12 Total: -114.63 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -0.12 Total: -55.57 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -77.73 0.81 -76.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731676280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.604 kcal (2) G-P(sol) polarization free energy of solvation -77.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds