Wall clock time and date at job start Tue Mar 31 2020 18:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99696 * 2 1 4 4 H 1.48503 * 109.47390 * 269.99914 * 3 2 1 5 5 H 1.48500 * 109.47236 * 30.00117 * 3 2 1 6 6 H 1.48501 * 109.47134 * 149.99910 * 3 2 1 7 7 C 1.38813 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99316 * 196.90753 * 7 2 1 9 9 N 1.36931 * 119.99842 * 16.91275 * 7 2 1 10 10 C 1.47148 * 120.98700 * 26.22194 * 9 7 2 11 11 C 1.53297 * 108.38516 * 129.48578 * 10 9 7 12 12 O 1.42956 * 109.22307 * 52.30511 * 11 10 9 13 13 C 1.42966 * 114.16579 * 297.41766 * 12 11 10 14 14 H 1.09000 * 109.51542 * 302.60328 * 13 12 11 15 15 C 1.53000 * 109.51429 * 182.50469 * 13 12 11 16 16 N 1.46503 * 109.47125 * 64.99913 * 15 13 12 17 17 C 1.34776 * 119.99887 * 179.97438 * 16 15 13 18 18 O 1.21279 * 120.00180 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99672 * 179.97438 * 17 16 15 20 20 C 1.53000 * 109.46910 * 180.02562 * 19 17 16 21 21 N 1.46503 * 109.47125 * 180.02562 * 20 19 17 22 22 C 1.35766 * 119.62107 * 90.00494 * 21 20 19 23 23 C 1.35345 * 120.69702 * 179.97438 * 22 21 20 24 24 C 1.40194 * 119.95147 * 0.02562 * 23 22 21 25 25 C 1.36400 * 119.26728 * 0.02562 * 24 23 22 26 26 C 1.34655 * 119.62484 * 269.73205 * 21 20 19 27 27 O 1.22067 * 119.98750 * 359.97438 * 26 21 20 28 28 C 1.47159 * 120.97687 * 206.24259 * 9 7 2 29 29 H 0.97000 * 120.00438 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.68284 * 9.76598 * 10 9 7 31 31 H 1.08994 * 109.68506 * 249.21186 * 10 9 7 32 32 H 1.09003 * 109.51375 * 292.38285 * 11 10 9 33 33 H 1.08998 * 109.51243 * 172.22893 * 11 10 9 34 34 H 1.09003 * 109.46995 * 305.00569 * 15 13 12 35 35 H 1.08998 * 109.47469 * 185.00530 * 15 13 12 36 36 H 0.97000 * 119.99967 * 0.02562 * 16 15 13 37 37 H 1.08998 * 109.47352 * 60.00795 * 19 17 16 38 38 H 1.08997 * 109.47466 * 299.99861 * 19 17 16 39 39 H 1.08998 * 109.47469 * 300.00701 * 20 19 17 40 40 H 1.09003 * 109.46995 * 60.00739 * 20 19 17 41 41 H 1.07992 * 119.64954 * 359.97438 * 22 21 20 42 42 H 1.08009 * 120.02214 * 180.02562 * 23 22 21 43 43 H 1.08003 * 120.36830 * 179.97438 * 24 23 22 44 44 H 1.07994 * 120.34733 * 179.97438 * 25 24 23 45 45 H 1.09008 * 109.67872 * 110.79221 * 28 9 7 46 46 H 1.08993 * 109.68208 * 350.23932 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0553 -1.2221 0.2726 9 7 1.3700 -2.3625 -0.3439 10 6 0.1974 -2.3456 -1.2327 11 6 0.4243 -3.3681 -2.3520 12 8 0.7649 -4.6306 -1.7743 13 6 1.9813 -4.6215 -1.0232 14 1 2.8005 -4.2893 -1.6609 15 6 2.2745 -6.0321 -0.5082 16 7 2.5269 -6.9237 -1.6430 17 6 2.8097 -8.2239 -1.4286 18 8 2.8547 -8.6559 -0.2962 19 6 3.0688 -9.1410 -2.5959 20 6 3.3621 -10.5516 -2.0809 21 7 3.6145 -11.4431 -3.2157 22 6 4.8806 -11.5930 -3.6826 23 6 5.1386 -12.4114 -4.7293 24 6 4.0921 -13.1142 -5.3429 25 6 2.8207 -12.9615 -4.8730 26 6 2.5891 -12.1087 -3.7802 27 8 1.4572 -11.9677 -3.3456 28 6 1.8342 -3.6633 0.1642 29 1 -0.4851 0.8400 -0.0004 30 1 0.0769 -1.3513 -1.6627 31 1 -0.6956 -2.6123 -0.6674 32 1 1.2377 -3.0304 -2.9943 33 1 -0.4869 -3.4713 -2.9412 34 1 1.4175 -6.3978 0.0574 35 1 3.1525 -6.0081 0.1373 36 1 2.4913 -6.5780 -2.5486 37 1 3.9252 -8.7753 -3.1623 38 1 2.1903 -9.1655 -3.2408 39 1 4.2403 -10.5275 -1.4358 40 1 2.5053 -10.9172 -1.5149 41 1 5.6902 -11.0536 -3.2138 42 1 6.1500 -12.5228 -5.0916 43 1 4.2904 -13.7687 -6.1788 44 1 2.0015 -13.4941 -5.3328 45 1 1.1059 -4.0626 0.8702 46 1 2.7975 -3.5414 0.6592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732377752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:26 Heat of formation + Delta-G solvation = -56.172687 kcal Electronic energy + Delta-G solvation = -28116.745826 eV Core-core repulsion = 24007.856262 eV Total energy + Delta-G solvation = -4108.889565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.70788 -39.81111 -38.50162 -37.21399 -35.51378 -34.92828 -34.33021 -31.96251 -31.35421 -30.57923 -30.13364 -27.64547 -26.16212 -24.89420 -24.01408 -23.22177 -22.56817 -21.76299 -20.59842 -19.61528 -18.12718 -17.68019 -17.22005 -16.88993 -16.50073 -16.26071 -16.15058 -15.68174 -15.45056 -15.05125 -14.87256 -14.50624 -14.45383 -14.01859 -13.75834 -13.73427 -13.25045 -13.08648 -12.97179 -12.78869 -12.70817 -12.43578 -12.26960 -12.12655 -11.60152 -11.55632 -11.16493 -10.90331 -10.77208 -10.58912 -10.45765 -10.29487 -10.25035 -10.05498 -9.98445 -9.69595 -9.12026 -9.06652 -8.58910 -8.35946 -6.80679 -5.88522 -3.32669 0.43756 1.50313 2.19648 2.52374 3.12994 3.31089 3.33184 3.38188 3.39643 4.14264 4.18833 4.25326 4.38119 4.38899 4.49994 4.65412 4.74172 4.84388 4.91216 5.02778 5.09427 5.28714 5.34975 5.42947 5.46783 5.48572 5.58791 5.69777 5.74743 5.79045 5.87962 5.98250 6.10246 6.12500 6.23541 6.32068 6.43436 6.44277 6.70489 6.71756 7.05760 7.42971 7.47773 7.66202 7.71145 7.80584 8.11822 8.28701 9.06698 9.69333 10.26127 11.19531 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.001830 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.538062 B =15300.731756 C =15439.862085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.058 0.942 15 C 0.129 3.871 16 N -0.717 5.717 17 C 0.518 3.482 18 O -0.545 6.545 19 C -0.156 4.156 20 C 0.106 3.894 21 N -0.496 5.496 22 C 0.135 3.865 23 C -0.236 4.236 24 C -0.018 4.018 25 C -0.244 4.244 26 C 0.509 3.491 27 O -0.547 6.547 28 C 0.122 3.878 29 H 0.256 0.744 30 H 0.095 0.905 31 H 0.029 0.971 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.404 0.596 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.162 0.838 42 H 0.145 0.855 43 H 0.134 0.866 44 H 0.147 0.853 45 H 0.030 0.970 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.945 -22.745 -11.859 28.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.076 0.924 15 C 0.006 3.994 16 N -0.368 5.368 17 C 0.303 3.697 18 O -0.423 6.423 19 C -0.197 4.197 20 C -0.016 4.016 21 N -0.207 5.207 22 C 0.008 3.992 23 C -0.260 4.260 24 C -0.039 4.039 25 C -0.266 4.266 26 C 0.311 3.689 27 O -0.429 6.429 28 C -0.006 4.006 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.238 0.762 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.129 0.871 41 H 0.180 0.820 42 H 0.162 0.838 43 H 0.152 0.848 44 H 0.165 0.835 45 H 0.048 0.952 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.990 -22.912 -10.704 27.574 hybrid contribution 0.569 1.403 -0.559 1.614 sum 11.559 -21.509 -11.263 26.891 Atomic orbital electron populations 1.70034 1.05276 1.25727 1.53582 1.25065 0.95369 0.98531 1.00717 0.86226 0.79066 0.83365 0.77715 1.21375 1.21646 1.20366 1.19204 0.92647 0.84438 1.42281 0.91294 1.44069 1.33566 1.00998 1.53119 1.21453 0.89148 0.98318 0.89768 1.23329 0.99033 0.84862 0.96576 1.87797 1.41169 1.32658 1.69281 1.22808 0.87557 0.93805 0.95347 0.92374 1.21452 1.01754 0.87882 0.88337 1.45946 1.70869 1.08981 1.11012 1.20201 0.76765 0.82552 0.90151 1.90726 1.51915 1.75594 1.24065 1.21936 1.05009 0.94373 0.98338 1.21733 1.05672 0.87660 0.86512 1.45642 1.07688 1.37916 1.29421 1.22034 0.86785 0.95981 0.94434 1.20671 1.00888 1.03919 1.00483 1.21456 0.92190 0.93917 0.96377 1.22162 0.98920 1.05089 1.00434 1.17237 0.84464 0.82018 0.85147 1.91006 1.20725 1.66391 1.64747 1.21444 0.98969 0.87243 0.92923 0.93445 0.88736 0.95319 0.94115 0.90004 0.90534 0.90022 0.76166 0.88417 0.87884 0.88065 0.87096 0.82019 0.83760 0.84848 0.83499 0.95188 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.74 11.14 55.49 0.62 -25.12 16 2 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 3 Si 0.91 21.18 29.59 -169.99 -5.03 16.15 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.26 -6.86 9.65 -15.06 -0.15 -7.01 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -14.62 3.05 -171.83 -0.52 -15.14 16 10 C 0.14 3.27 5.44 -3.53 -0.02 3.25 16 11 C 0.04 0.75 6.98 37.31 0.26 1.01 16 12 O -0.39 -7.17 10.33 -35.23 -0.36 -7.53 16 13 C 0.06 1.09 2.81 -26.58 -0.07 1.02 16 14 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 15 C 0.13 1.87 5.35 -4.04 -0.02 1.85 16 16 N -0.72 -8.76 5.50 -60.29 -0.33 -9.09 16 17 C 0.52 6.33 7.83 -10.99 -0.09 6.25 16 18 O -0.55 -8.55 15.98 5.56 0.09 -8.46 16 19 C -0.16 -1.35 6.02 -27.88 -0.17 -1.52 16 20 C 0.11 0.94 4.63 -4.04 -0.02 0.92 16 21 N -0.50 -4.11 2.58 -119.77 -0.31 -4.42 16 22 C 0.14 0.67 10.28 -16.84 -0.17 0.49 16 23 C -0.24 -1.01 10.01 -39.88 -0.40 -1.41 16 24 C -0.02 -0.09 10.10 -39.51 -0.40 -0.49 16 25 C -0.24 -2.04 9.99 -39.38 -0.39 -2.43 16 26 C 0.51 5.70 7.41 -15.45 -0.11 5.59 16 27 O -0.55 -8.50 16.64 4.86 0.08 -8.41 16 28 C 0.12 2.48 6.02 -3.53 -0.02 2.46 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.09 2.44 6.14 -51.93 -0.32 2.12 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.40 4.24 8.47 -40.82 -0.35 3.89 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.10 0.72 7.97 -51.93 -0.41 0.30 16 40 H 0.11 1.31 7.34 -51.93 -0.38 0.93 16 41 H 0.16 0.28 8.04 -52.49 -0.42 -0.15 16 42 H 0.14 0.25 8.06 -52.48 -0.42 -0.17 16 43 H 0.13 0.36 8.06 -52.48 -0.42 -0.06 16 44 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 45 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 46 H 0.06 1.24 7.96 -51.93 -0.41 0.82 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -35.24 383.16 -8.77 -44.01 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.92 Total: 2.31 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -1.86 Total: 9.94 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.55 Total: -53.77 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.19 Total: -24.41 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.24 -8.77 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732377752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.162 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds