Wall clock time and date at job start Tue Mar 31 2020 18:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99696 * 2 1 4 4 H 1.48503 * 109.47390 * 269.99914 * 3 2 1 5 5 H 1.48500 * 109.47236 * 30.00117 * 3 2 1 6 6 H 1.48501 * 109.47134 * 149.99910 * 3 2 1 7 7 C 1.38813 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99316 * 196.90753 * 7 2 1 9 9 N 1.36931 * 119.99842 * 16.91275 * 7 2 1 10 10 C 1.47148 * 120.98700 * 26.22194 * 9 7 2 11 11 C 1.53297 * 108.38516 * 129.48578 * 10 9 7 12 12 O 1.42956 * 109.22307 * 52.30511 * 11 10 9 13 13 C 1.42966 * 114.16579 * 297.41766 * 12 11 10 14 14 H 1.09000 * 109.51542 * 302.60328 * 13 12 11 15 15 C 1.53000 * 109.51429 * 182.50469 * 13 12 11 16 16 N 1.46503 * 109.47125 * 64.99913 * 15 13 12 17 17 C 1.34776 * 119.99887 * 179.97438 * 16 15 13 18 18 O 1.21279 * 120.00180 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99672 * 179.97438 * 17 16 15 20 20 C 1.53000 * 109.46910 * 180.02562 * 19 17 16 21 21 N 1.46503 * 109.47125 * 180.02562 * 20 19 17 22 22 C 1.35766 * 119.62107 * 90.00494 * 21 20 19 23 23 C 1.35345 * 120.69702 * 179.97438 * 22 21 20 24 24 C 1.40194 * 119.95147 * 0.02562 * 23 22 21 25 25 C 1.36400 * 119.26728 * 0.02562 * 24 23 22 26 26 C 1.34655 * 119.62484 * 269.73205 * 21 20 19 27 27 O 1.22067 * 119.98750 * 359.97438 * 26 21 20 28 28 C 1.47159 * 120.97687 * 206.24259 * 9 7 2 29 29 H 0.97000 * 120.00438 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.68284 * 9.76598 * 10 9 7 31 31 H 1.08994 * 109.68506 * 249.21186 * 10 9 7 32 32 H 1.09003 * 109.51375 * 292.38285 * 11 10 9 33 33 H 1.08998 * 109.51243 * 172.22893 * 11 10 9 34 34 H 1.09003 * 109.46995 * 305.00569 * 15 13 12 35 35 H 1.08998 * 109.47469 * 185.00530 * 15 13 12 36 36 H 0.97000 * 119.99967 * 0.02562 * 16 15 13 37 37 H 1.08998 * 109.47352 * 60.00795 * 19 17 16 38 38 H 1.08997 * 109.47466 * 299.99861 * 19 17 16 39 39 H 1.08998 * 109.47469 * 300.00701 * 20 19 17 40 40 H 1.09003 * 109.46995 * 60.00739 * 20 19 17 41 41 H 1.07992 * 119.64954 * 359.97438 * 22 21 20 42 42 H 1.08009 * 120.02214 * 180.02562 * 23 22 21 43 43 H 1.08003 * 120.36830 * 179.97438 * 24 23 22 44 44 H 1.07994 * 120.34733 * 179.97438 * 25 24 23 45 45 H 1.09008 * 109.67872 * 110.79221 * 28 9 7 46 46 H 1.08993 * 109.68208 * 350.23932 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0553 -1.2221 0.2726 9 7 1.3700 -2.3625 -0.3439 10 6 0.1974 -2.3456 -1.2327 11 6 0.4243 -3.3681 -2.3520 12 8 0.7649 -4.6306 -1.7743 13 6 1.9813 -4.6215 -1.0232 14 1 2.8005 -4.2893 -1.6609 15 6 2.2745 -6.0321 -0.5082 16 7 2.5269 -6.9237 -1.6430 17 6 2.8097 -8.2239 -1.4286 18 8 2.8547 -8.6559 -0.2962 19 6 3.0688 -9.1410 -2.5959 20 6 3.3621 -10.5516 -2.0809 21 7 3.6145 -11.4431 -3.2157 22 6 4.8806 -11.5930 -3.6826 23 6 5.1386 -12.4114 -4.7293 24 6 4.0921 -13.1142 -5.3429 25 6 2.8207 -12.9615 -4.8730 26 6 2.5891 -12.1087 -3.7802 27 8 1.4572 -11.9677 -3.3456 28 6 1.8342 -3.6633 0.1642 29 1 -0.4851 0.8400 -0.0004 30 1 0.0769 -1.3513 -1.6627 31 1 -0.6956 -2.6123 -0.6674 32 1 1.2377 -3.0304 -2.9943 33 1 -0.4869 -3.4713 -2.9412 34 1 1.4175 -6.3978 0.0574 35 1 3.1525 -6.0081 0.1373 36 1 2.4913 -6.5780 -2.5486 37 1 3.9252 -8.7753 -3.1623 38 1 2.1903 -9.1655 -3.2408 39 1 4.2403 -10.5275 -1.4358 40 1 2.5053 -10.9172 -1.5149 41 1 5.6902 -11.0536 -3.2138 42 1 6.1500 -12.5228 -5.0916 43 1 4.2904 -13.7687 -6.1788 44 1 2.0015 -13.4941 -5.3328 45 1 1.1059 -4.0626 0.8702 46 1 2.7975 -3.5414 0.6592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732377752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:25 Heat of formation + Delta-G solvation = -81.690545 kcal Electronic energy + Delta-G solvation = -28117.852363 eV Core-core repulsion = 24007.856262 eV Total energy + Delta-G solvation = -4109.996102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.34543 -40.90026 -39.98870 -37.95902 -36.57672 -36.07518 -35.73639 -33.42341 -32.72567 -31.83345 -30.71139 -29.26627 -27.49383 -25.93380 -24.97023 -24.58459 -23.53026 -22.94248 -21.80094 -21.07871 -18.94170 -18.79703 -18.26878 -17.92316 -17.53422 -17.28805 -17.08376 -16.88620 -16.58806 -16.41008 -16.13242 -15.58301 -15.44937 -15.21459 -15.07579 -14.94231 -14.71633 -14.51414 -14.29958 -13.79712 -13.57812 -13.24788 -13.20961 -13.01678 -12.82449 -12.71990 -12.66461 -12.54027 -12.26189 -12.17943 -12.08630 -11.88905 -11.37774 -11.23089 -10.99992 -10.93663 -10.80964 -10.55843 -10.15467 -8.94560 -8.77853 -7.92436 -5.40364 -0.04166 0.95731 1.46853 1.47452 1.52240 1.56949 1.57523 2.19759 2.47598 2.72327 2.76692 3.22507 3.47150 3.58470 3.67743 3.78054 3.92745 3.97700 4.02320 4.07261 4.21409 4.24254 4.32923 4.39340 4.45998 4.50544 4.51991 4.60291 4.70104 4.70852 4.77030 4.79355 4.88186 5.04615 5.11952 5.22397 5.24026 5.34938 5.44635 5.53605 5.59651 5.70663 6.13438 6.23997 6.31225 6.47557 7.01274 7.04271 7.15882 7.72468 8.26278 9.13646 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.001830 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.538062 B =15300.731756 C =15439.862085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.974 3.026 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.265 4.265 8 H 0.075 0.925 9 N -0.612 5.612 10 C 0.142 3.858 11 C 0.055 3.945 12 O -0.392 6.392 13 C 0.079 3.921 14 H 0.074 0.926 15 C 0.140 3.860 16 N -0.711 5.711 17 C 0.519 3.481 18 O -0.582 6.582 19 C -0.141 4.141 20 C 0.108 3.892 21 N -0.492 5.492 22 C 0.131 3.869 23 C -0.229 4.229 24 C 0.007 3.993 25 C -0.284 4.284 26 C 0.490 3.510 27 O -0.615 6.615 28 C 0.116 3.884 29 H 0.251 0.749 30 H 0.068 0.932 31 H -0.004 1.004 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.415 0.585 37 H 0.139 0.861 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.071 0.929 41 H 0.203 0.797 42 H 0.183 0.817 43 H 0.166 0.834 44 H 0.140 0.860 45 H 0.014 0.986 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.972 -23.568 -13.950 31.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.801 3.199 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.395 4.395 8 H 0.093 0.907 9 N -0.337 5.337 10 C 0.016 3.984 11 C -0.023 4.023 12 O -0.312 6.312 13 C 0.019 3.981 14 H 0.092 0.908 15 C 0.015 3.985 16 N -0.362 5.362 17 C 0.306 3.694 18 O -0.463 6.463 19 C -0.182 4.182 20 C -0.014 4.014 21 N -0.201 5.201 22 C 0.005 3.995 23 C -0.251 4.251 24 C -0.014 4.014 25 C -0.306 4.306 26 C 0.296 3.704 27 O -0.503 6.503 28 C -0.011 4.011 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.014 0.986 32 H 0.072 0.928 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.252 0.748 37 H 0.157 0.843 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.090 0.910 41 H 0.220 0.780 42 H 0.200 0.800 43 H 0.183 0.817 44 H 0.158 0.842 45 H 0.032 0.968 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.085 -23.766 -12.836 30.938 hybrid contribution -0.569 1.584 0.112 1.687 sum 14.516 -22.182 -12.723 29.405 Atomic orbital electron populations 1.70200 1.06815 1.26085 1.55215 1.25875 0.96113 1.01781 1.01041 0.85173 0.77992 0.78994 0.77706 1.20829 1.22432 1.19119 1.19577 0.93084 0.85443 1.41399 0.90705 1.44350 1.33590 1.01959 1.53777 1.21317 0.87938 0.98433 0.90678 1.23149 1.00748 0.83578 0.94824 1.87813 1.42006 1.32078 1.69261 1.22676 0.87415 0.94235 0.93751 0.90805 1.21198 1.01501 0.86796 0.88960 1.45834 1.70626 1.08867 1.10919 1.20743 0.75606 0.82517 0.90545 1.90716 1.53508 1.76157 1.25891 1.21857 1.06241 0.93331 0.96727 1.21635 1.05174 0.87712 0.86867 1.45577 1.08588 1.37111 1.28858 1.22813 0.85910 0.96214 0.94597 1.21211 1.02173 1.02246 0.99431 1.21890 0.90913 0.92655 0.95989 1.22102 1.00607 1.06721 1.01141 1.17715 0.84227 0.82669 0.85825 1.90954 1.23271 1.69077 1.67022 1.21618 0.98815 0.86290 0.94351 0.93962 0.91368 0.98566 0.92789 0.87591 0.92513 0.88833 0.74839 0.84337 0.88811 0.85736 0.90992 0.77975 0.79953 0.81677 0.84167 0.96754 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.96 11.14 21.65 0.24 -54.72 16 2 C -0.05 -2.89 4.95 84.86 0.42 -2.47 16 3 Si 0.97 43.70 29.59 68.60 2.03 45.73 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.27 -14.21 9.65 84.03 0.81 -13.40 16 8 H 0.08 3.84 7.88 -2.91 -0.02 3.81 16 9 N -0.61 -30.36 3.05 -697.54 -2.13 -32.49 16 10 C 0.14 6.82 5.44 86.36 0.47 7.29 16 11 C 0.05 2.00 6.98 72.08 0.50 2.50 16 12 O -0.39 -13.89 10.33 -148.98 -1.54 -15.43 16 13 C 0.08 2.53 2.81 30.69 0.09 2.62 16 14 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 15 C 0.14 3.88 5.35 86.38 0.46 4.34 16 16 N -0.71 -16.02 5.50 -463.05 -2.55 -18.56 16 17 C 0.52 11.99 7.83 87.66 0.69 12.68 16 18 O -0.58 -18.05 15.98 -3.03 -0.05 -18.10 16 19 C -0.14 -2.19 6.02 29.85 0.18 -2.01 16 20 C 0.11 1.84 4.63 86.38 0.40 2.24 16 21 N -0.49 -7.50 2.58 -650.97 -1.68 -9.18 16 22 C 0.13 0.76 10.28 83.42 0.86 1.61 16 23 C -0.23 -0.87 10.01 22.08 0.22 -0.65 16 24 C 0.01 0.06 10.10 22.32 0.23 0.28 16 25 C -0.28 -4.71 9.99 22.40 0.22 -4.49 16 26 C 0.49 11.39 7.41 84.82 0.63 12.02 16 27 O -0.62 -20.95 16.64 -5.53 -0.09 -21.04 16 28 C 0.12 4.69 6.02 86.35 0.52 5.21 16 29 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.07 3.62 6.14 -2.38 -0.01 3.61 16 31 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.42 7.58 8.47 -92.71 -0.79 6.79 16 37 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.12 1.49 7.97 -2.39 -0.02 1.47 16 40 H 0.07 1.82 7.34 -2.39 -0.02 1.81 16 41 H 0.20 -0.51 8.04 -2.91 -0.02 -0.54 16 42 H 0.18 -0.59 8.06 -2.91 -0.02 -0.62 16 43 H 0.17 0.18 8.06 -2.91 -0.02 0.15 16 44 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 46 H 0.07 2.84 7.96 -2.39 -0.02 2.82 16 Total: -1.00 -82.52 383.16 1.13 -81.39 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.20 Total: 14.63 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 6.69 Total: 27.77 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -6.12 Total: -114.95 kcal Atomic # 8 Polarization: -52.89 SS G_CDS: -1.68 Total: -54.57 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -82.52 1.13 -81.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732377752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.301 kcal (2) G-P(sol) polarization free energy of solvation -82.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds