Wall clock time and date at job start Tue Mar 31 2020 19:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99829 * 2 1 4 4 H 1.48501 * 109.47312 * 269.99991 * 3 2 1 5 5 H 1.48497 * 109.47388 * 30.00603 * 3 2 1 6 6 H 1.48501 * 109.46797 * 150.00086 * 3 2 1 7 7 C 1.38811 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99876 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00174 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00120 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47478 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.46803 * 304.99645 * 11 10 9 13 13 C 1.53001 * 109.47150 * 64.99647 * 11 10 9 14 14 C 1.53008 * 109.47059 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46745 * 299.99957 * 14 13 11 16 16 C 1.53001 * 109.47307 * 60.00195 * 15 14 13 17 17 C 1.52994 * 109.47150 * 300.00011 * 16 15 14 18 18 H 1.09005 * 109.47271 * 180.02562 * 17 16 15 19 19 N 1.46503 * 109.46878 * 299.99725 * 17 16 15 20 20 C 1.34781 * 119.99993 * 275.00384 * 19 17 16 21 21 O 1.21606 * 120.00029 * 359.97438 * 20 19 17 22 22 C 1.47289 * 119.99856 * 180.02562 * 20 19 17 23 23 C 1.36570 * 125.80851 * 179.97438 * 22 20 19 24 24 C 1.40054 * 106.93169 * 180.02562 * 23 22 20 25 25 C 1.36572 * 106.92686 * 0.02562 * 24 23 22 26 26 C 1.47286 * 125.80863 * 179.97438 * 25 24 23 27 27 N 1.34777 * 120.00316 * 180.02562 * 26 25 24 28 28 O 1.21609 * 119.99966 * 0.02562 * 26 25 24 29 29 O 1.34557 * 108.38711 * 0.24156 * 25 24 23 30 30 H 0.97004 * 120.00102 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00029 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47566 * 59.99555 * 10 9 7 33 33 H 1.09005 * 109.47080 * 300.00168 * 10 9 7 34 34 H 1.08996 * 109.46879 * 300.00165 * 13 11 10 35 35 H 1.08998 * 109.47012 * 60.00479 * 13 11 10 36 36 H 1.08998 * 109.47143 * 60.00161 * 14 13 11 37 37 H 1.08996 * 109.46763 * 180.02562 * 14 13 11 38 38 H 1.09003 * 109.46769 * 180.02562 * 15 14 13 39 39 H 1.08998 * 109.47467 * 300.00006 * 15 14 13 40 40 H 1.08998 * 109.47238 * 179.97438 * 16 15 14 41 41 H 1.08998 * 109.46707 * 59.99986 * 16 15 14 42 42 H 0.97006 * 120.00045 * 95.00090 * 19 17 16 43 43 H 1.08005 * 126.53028 * 0.02562 * 23 22 20 44 44 H 1.08005 * 126.54100 * 180.02562 * 24 23 22 45 45 H 0.97001 * 120.00485 * 180.02562 * 27 26 25 46 46 H 0.97005 * 119.99790 * 359.72138 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 6 5.6163 -2.1913 -0.0020 12 1 5.8658 -1.5447 -0.8433 13 6 6.0064 -1.4999 1.3060 14 6 7.5106 -1.2198 1.3059 15 6 8.2749 -2.5391 1.1788 16 6 7.8849 -3.2305 -0.1291 17 6 6.3808 -3.5105 -0.1291 18 1 6.1029 -4.0035 -1.0608 19 7 6.0459 -4.3798 1.0015 20 6 6.1640 -5.7171 0.8815 21 8 6.5481 -6.2021 -0.1654 22 6 5.8268 -6.5911 2.0181 23 6 5.9018 -7.9547 2.0272 24 6 5.4923 -8.3772 3.2982 25 6 5.1842 -7.2536 4.0106 26 6 4.7062 -7.2203 5.4034 27 7 4.4355 -6.0400 5.9950 28 8 4.5557 -8.2579 6.0195 29 8 5.3859 -6.1823 3.2218 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0014 32 1 3.8485 -3.0419 -0.8924 33 1 3.8491 -3.0430 0.8875 34 1 5.4621 -0.5599 1.3963 35 1 5.7569 -2.1465 2.1472 36 1 7.7597 -0.5730 0.4647 37 1 7.7885 -0.7276 2.2379 38 1 9.3465 -2.3396 1.1792 39 1 8.0258 -3.1859 2.0200 40 1 8.4297 -4.1702 -0.2199 41 1 8.1341 -2.5837 -0.9703 42 1 5.7392 -3.9930 1.8366 43 1 6.2169 -8.5867 1.2101 44 1 5.4318 -9.3972 3.6482 45 1 4.1211 -6.0181 6.9124 46 1 4.5594 -5.2121 5.5049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733078936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:00 Heat of formation + Delta-G solvation = -59.275145 kcal Electronic energy + Delta-G solvation = -29399.561055 eV Core-core repulsion = 25290.536958 eV Total energy + Delta-G solvation = -4109.024097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.15573 -40.44144 -39.55550 -38.33090 -34.93213 -34.33562 -34.01990 -33.28590 -32.04608 -30.94974 -30.16033 -29.55911 -25.75125 -24.97194 -23.05316 -22.57474 -22.14574 -21.54672 -20.83786 -20.57392 -19.17197 -19.14621 -18.17814 -17.60910 -17.23903 -16.96352 -16.00079 -15.49320 -15.30685 -15.00081 -14.81561 -14.59683 -14.44287 -14.12963 -13.91649 -13.61246 -13.54367 -13.47081 -13.44102 -12.99512 -12.85187 -12.39136 -12.23082 -11.90900 -11.68972 -11.16684 -11.06876 -10.98323 -10.87287 -10.60436 -10.48103 -10.43867 -10.31141 -10.22001 -10.12609 -10.04851 -9.62682 -9.30192 -9.03366 -8.93549 -7.28379 -5.81249 -3.17227 0.29888 1.58473 1.99851 2.73430 2.83451 2.91645 3.13069 3.30984 3.34443 3.40668 4.26586 4.46819 4.53729 4.54366 4.63687 4.68943 4.72987 5.00890 5.12655 5.13585 5.20429 5.37690 5.40628 5.44681 5.48061 5.49877 5.54984 5.61833 5.70901 5.83576 5.87267 5.95315 6.00873 6.06436 6.12527 6.14441 6.26468 6.29974 6.36105 6.40439 6.61440 6.66417 6.82669 7.26009 7.66372 7.85475 7.94711 8.37460 9.16397 9.88414 10.07994 11.37172 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009882 B = 0.003455 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.821702 B = 8101.587725 C = 9508.787904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.754 5.754 10 C 0.163 3.837 11 C -0.107 4.107 12 H 0.089 0.911 13 C -0.114 4.114 14 C -0.122 4.122 15 C -0.117 4.117 16 C -0.129 4.129 17 C 0.154 3.846 18 H 0.095 0.905 19 N -0.700 5.700 20 C 0.601 3.399 21 O -0.514 6.514 22 C -0.032 4.032 23 C -0.137 4.137 24 C -0.127 4.127 25 C -0.054 4.054 26 C 0.611 3.389 27 N -0.839 5.839 28 O -0.519 6.519 29 O -0.152 6.152 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.028 0.972 33 H 0.025 0.975 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.406 0.594 43 H 0.170 0.830 44 H 0.169 0.831 45 H 0.412 0.588 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.014 -10.292 8.131 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.400 5.400 10 C 0.036 3.964 11 C -0.126 4.126 12 H 0.107 0.893 13 C -0.151 4.151 14 C -0.159 4.159 15 C -0.155 4.155 16 C -0.168 4.168 17 C 0.050 3.950 18 H 0.113 0.887 19 N -0.352 5.352 20 C 0.385 3.615 21 O -0.391 6.391 22 C -0.086 4.086 23 C -0.157 4.157 24 C -0.147 4.147 25 C -0.108 4.108 26 C 0.394 3.606 27 N -0.402 5.402 28 O -0.396 6.396 29 O -0.048 6.048 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.243 0.757 43 H 0.188 0.812 44 H 0.187 0.813 45 H 0.244 0.756 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 17.942 -11.119 7.707 22.471 hybrid contribution 0.203 1.734 0.505 1.818 sum 18.145 -9.385 8.213 22.017 Atomic orbital electron populations 1.69703 1.05125 1.25833 1.57482 1.24671 0.95211 0.97167 1.02018 0.86559 0.79130 0.85033 0.77806 1.21072 1.21748 1.20357 1.19045 0.80635 0.94705 1.43089 0.89323 1.42696 1.04006 1.02090 1.91176 1.20631 0.87694 0.89337 0.98743 1.21702 0.96556 0.95024 0.99308 0.89325 1.21575 0.95225 1.01479 0.96860 1.21595 0.95425 0.97079 1.01804 1.21502 0.99507 0.96744 0.97699 1.21922 0.95347 1.01034 0.98474 1.21073 0.94300 0.90111 0.89528 0.88704 1.46053 1.66324 1.05123 1.17681 1.16636 0.78272 0.81842 0.84739 1.90875 1.46982 1.74786 1.26476 1.22586 1.06015 0.94835 0.85197 1.21986 1.01978 0.93162 0.98609 1.21993 1.00063 0.99849 0.92844 1.22284 1.09658 0.85762 0.93089 1.16610 0.76848 0.84394 0.82699 1.43706 1.69360 1.08468 1.18692 1.90925 1.53114 1.32743 1.62846 1.84043 1.64650 1.34815 1.21251 0.93033 0.80619 0.95429 0.95670 0.90726 0.92312 0.91839 0.92114 0.92208 0.92234 0.91420 0.90649 0.75687 0.81242 0.81329 0.75619 0.76023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.97 55.49 0.78 -28.15 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.43 27.73 -169.99 -4.71 16.71 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 7 C -0.24 -6.76 10.47 -15.06 -0.16 -6.91 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 N -0.75 -16.91 5.13 -59.91 -0.31 -17.21 16 10 C 0.16 2.91 5.42 -4.04 -0.02 2.89 16 11 C -0.11 -1.41 2.02 -90.62 -0.18 -1.59 16 12 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 13 C -0.11 -1.38 4.90 -26.73 -0.13 -1.51 16 14 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 15 C -0.12 -1.06 5.77 -26.73 -0.15 -1.21 16 16 C -0.13 -1.29 5.60 -26.73 -0.15 -1.44 16 17 C 0.15 1.80 2.23 -67.93 -0.15 1.65 16 18 H 0.09 1.24 7.57 -51.93 -0.39 0.84 16 19 N -0.70 -7.89 3.61 -54.93 -0.20 -8.09 16 20 C 0.60 7.51 7.77 -12.58 -0.10 7.41 16 21 O -0.51 -7.70 16.52 5.27 0.09 -7.61 16 22 C -0.03 -0.36 7.14 -36.51 -0.26 -0.62 16 23 C -0.14 -1.40 10.60 -39.50 -0.42 -1.81 16 24 C -0.13 -1.24 10.60 -39.50 -0.42 -1.66 16 25 C -0.05 -0.56 7.14 -36.51 -0.26 -0.82 16 26 C 0.61 6.24 8.08 -12.58 -0.10 6.14 16 27 N -0.84 -5.65 8.87 30.40 0.27 -5.38 16 28 O -0.52 -6.86 17.70 5.27 0.09 -6.76 16 29 O -0.15 -1.57 10.14 4.32 0.04 -1.52 16 30 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.36 7.83 4.71 -40.82 -0.19 7.63 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.03 0.46 7.61 -51.93 -0.40 0.06 16 34 H 0.07 1.07 7.18 -51.93 -0.37 0.70 16 35 H 0.06 0.66 6.51 -51.93 -0.34 0.32 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.54 7.60 -51.93 -0.39 0.15 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.41 4.20 6.43 -40.82 -0.26 3.93 16 43 H 0.17 1.49 8.06 -52.48 -0.42 1.06 16 44 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 45 H 0.41 2.08 8.93 -40.82 -0.36 1.72 16 46 H 0.41 2.15 8.59 -40.82 -0.35 1.80 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -34.16 378.19 -7.47 -41.64 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.46 Total: 11.48 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.76 Total: -0.79 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.54 Total: -58.84 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.22 Total: -15.90 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.16 -7.47 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733078936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.638 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds