Wall clock time and date at job start Tue Mar 31 2020 19:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99829 * 2 1 4 4 H 1.48501 * 109.47312 * 269.99991 * 3 2 1 5 5 H 1.48497 * 109.47388 * 30.00603 * 3 2 1 6 6 H 1.48501 * 109.46797 * 150.00086 * 3 2 1 7 7 C 1.38811 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99876 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00174 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00120 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47478 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.46803 * 304.99645 * 11 10 9 13 13 C 1.53001 * 109.47150 * 64.99647 * 11 10 9 14 14 C 1.53008 * 109.47059 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46745 * 299.99957 * 14 13 11 16 16 C 1.53001 * 109.47307 * 60.00195 * 15 14 13 17 17 C 1.52994 * 109.47150 * 300.00011 * 16 15 14 18 18 H 1.09005 * 109.47271 * 180.02562 * 17 16 15 19 19 N 1.46503 * 109.46878 * 299.99725 * 17 16 15 20 20 C 1.34781 * 119.99993 * 275.00384 * 19 17 16 21 21 O 1.21606 * 120.00029 * 359.97438 * 20 19 17 22 22 C 1.47289 * 119.99856 * 180.02562 * 20 19 17 23 23 C 1.36570 * 125.80851 * 179.97438 * 22 20 19 24 24 C 1.40054 * 106.93169 * 180.02562 * 23 22 20 25 25 C 1.36572 * 106.92686 * 0.02562 * 24 23 22 26 26 C 1.47286 * 125.80863 * 179.97438 * 25 24 23 27 27 N 1.34777 * 120.00316 * 180.02562 * 26 25 24 28 28 O 1.21609 * 119.99966 * 0.02562 * 26 25 24 29 29 O 1.34557 * 108.38711 * 0.24156 * 25 24 23 30 30 H 0.97004 * 120.00102 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00029 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47566 * 59.99555 * 10 9 7 33 33 H 1.09005 * 109.47080 * 300.00168 * 10 9 7 34 34 H 1.08996 * 109.46879 * 300.00165 * 13 11 10 35 35 H 1.08998 * 109.47012 * 60.00479 * 13 11 10 36 36 H 1.08998 * 109.47143 * 60.00161 * 14 13 11 37 37 H 1.08996 * 109.46763 * 180.02562 * 14 13 11 38 38 H 1.09003 * 109.46769 * 180.02562 * 15 14 13 39 39 H 1.08998 * 109.47467 * 300.00006 * 15 14 13 40 40 H 1.08998 * 109.47238 * 179.97438 * 16 15 14 41 41 H 1.08998 * 109.46707 * 59.99986 * 16 15 14 42 42 H 0.97006 * 120.00045 * 95.00090 * 19 17 16 43 43 H 1.08005 * 126.53028 * 0.02562 * 23 22 20 44 44 H 1.08005 * 126.54100 * 180.02562 * 24 23 22 45 45 H 0.97001 * 120.00485 * 180.02562 * 27 26 25 46 46 H 0.97005 * 119.99790 * 359.72138 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 6 5.6163 -2.1913 -0.0020 12 1 5.8658 -1.5447 -0.8433 13 6 6.0064 -1.4999 1.3060 14 6 7.5106 -1.2198 1.3059 15 6 8.2749 -2.5391 1.1788 16 6 7.8849 -3.2305 -0.1291 17 6 6.3808 -3.5105 -0.1291 18 1 6.1029 -4.0035 -1.0608 19 7 6.0459 -4.3798 1.0015 20 6 6.1640 -5.7171 0.8815 21 8 6.5481 -6.2021 -0.1654 22 6 5.8268 -6.5911 2.0181 23 6 5.9018 -7.9547 2.0272 24 6 5.4923 -8.3772 3.2982 25 6 5.1842 -7.2536 4.0106 26 6 4.7062 -7.2203 5.4034 27 7 4.4355 -6.0400 5.9950 28 8 4.5557 -8.2579 6.0195 29 8 5.3859 -6.1823 3.2218 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0014 32 1 3.8485 -3.0419 -0.8924 33 1 3.8491 -3.0430 0.8875 34 1 5.4621 -0.5599 1.3963 35 1 5.7569 -2.1465 2.1472 36 1 7.7597 -0.5730 0.4647 37 1 7.7885 -0.7276 2.2379 38 1 9.3465 -2.3396 1.1792 39 1 8.0258 -3.1859 2.0200 40 1 8.4297 -4.1702 -0.2199 41 1 8.1341 -2.5837 -0.9703 42 1 5.7392 -3.9930 1.8366 43 1 6.2169 -8.5867 1.2101 44 1 5.4318 -9.3972 3.6482 45 1 4.1211 -6.0181 6.9124 46 1 4.5594 -5.2121 5.5049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733078936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:00 Heat of formation + Delta-G solvation = -85.087294 kcal Electronic energy + Delta-G solvation = -29400.680354 eV Core-core repulsion = 25290.536958 eV Total energy + Delta-G solvation = -4110.143396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.97632 -41.42678 -40.38444 -39.36742 -36.62602 -35.10106 -34.91055 -34.11549 -33.86021 -31.85067 -31.60950 -30.49246 -27.19590 -25.92314 -24.40338 -23.69781 -23.05704 -22.44200 -22.05349 -21.46945 -20.15850 -20.02946 -19.61166 -18.88539 -17.98356 -17.80547 -16.99656 -16.68586 -16.48911 -16.09678 -15.94595 -15.64856 -15.52779 -15.42659 -15.05836 -14.78964 -14.60655 -14.41953 -14.28685 -14.23136 -14.12089 -13.80886 -13.17989 -13.06591 -12.94898 -12.74335 -12.56819 -12.14944 -11.90823 -11.87118 -11.84077 -11.50715 -11.37431 -11.28271 -11.24378 -11.04919 -10.93158 -10.89481 -10.25464 -9.89019 -9.29395 -8.02516 -5.36494 -0.55470 0.75291 1.14169 1.37847 1.42740 1.50001 1.92941 1.93385 1.99472 2.39025 2.48977 3.29012 3.38955 3.50028 3.68613 3.74507 3.81403 3.84746 3.94993 4.21513 4.29786 4.33615 4.37366 4.44733 4.47069 4.56016 4.64382 4.71637 4.71983 4.89148 5.00417 5.05670 5.07465 5.14983 5.25658 5.28176 5.29556 5.34615 5.42080 5.47913 5.57489 5.68078 5.75132 6.15165 6.20875 6.32963 6.90099 6.99528 7.08409 7.83383 8.04226 9.19193 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009882 B = 0.003455 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.821702 B = 8101.587725 C = 9508.787904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.063 4.063 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.243 1.243 7 C -0.236 4.236 8 H 0.050 0.950 9 N -0.752 5.752 10 C 0.162 3.838 11 C -0.093 4.093 12 H 0.094 0.906 13 C -0.112 4.112 14 C -0.114 4.114 15 C -0.112 4.112 16 C -0.123 4.123 17 C 0.158 3.842 18 H 0.079 0.921 19 N -0.694 5.694 20 C 0.602 3.398 21 O -0.543 6.543 22 C -0.050 4.050 23 C -0.131 4.131 24 C -0.128 4.128 25 C -0.059 4.059 26 C 0.610 3.390 27 N -0.819 5.819 28 O -0.553 6.553 29 O -0.148 6.148 30 H 0.258 0.742 31 H 0.368 0.632 32 H 0.011 0.989 33 H 0.025 0.975 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.412 0.588 43 H 0.182 0.818 44 H 0.184 0.816 45 H 0.422 0.578 46 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.761 -9.283 8.970 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.255 4.255 3 Si 0.783 3.217 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.167 1.167 7 C -0.367 4.367 8 H 0.068 0.932 9 N -0.398 5.398 10 C 0.035 3.965 11 C -0.112 4.112 12 H 0.112 0.888 13 C -0.150 4.150 14 C -0.152 4.152 15 C -0.149 4.149 16 C -0.161 4.161 17 C 0.054 3.946 18 H 0.097 0.903 19 N -0.345 5.345 20 C 0.388 3.612 21 O -0.423 6.423 22 C -0.104 4.104 23 C -0.151 4.151 24 C -0.148 4.148 25 C -0.113 4.113 26 C 0.394 3.606 27 N -0.383 5.383 28 O -0.433 6.433 29 O -0.044 6.044 30 H 0.067 0.933 31 H 0.202 0.798 32 H 0.029 0.971 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.250 0.750 43 H 0.199 0.801 44 H 0.201 0.799 45 H 0.256 0.744 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 20.736 -10.086 8.569 24.599 hybrid contribution -0.725 1.311 0.250 1.519 sum 20.011 -8.775 8.819 23.563 Atomic orbital electron populations 1.69901 1.07348 1.26750 1.59606 1.25538 0.96087 1.01411 1.02438 0.85396 0.78939 0.79237 0.78123 1.20620 1.22393 1.16718 1.18993 0.82904 0.93259 1.41557 0.93200 1.42635 1.02245 1.04072 1.90883 1.20758 0.90641 0.87310 0.97760 1.21558 0.92967 0.96153 1.00567 0.88816 1.21560 0.97001 1.00388 0.96073 1.21544 0.93288 0.97582 1.02761 1.21475 1.00367 0.96173 0.96915 1.21872 0.93293 1.01229 0.99711 1.20995 0.95593 0.89011 0.89013 0.90300 1.46009 1.65891 1.04869 1.17766 1.16722 0.77777 0.82060 0.84666 1.90856 1.48477 1.75286 1.27644 1.22431 1.07486 0.95069 0.85385 1.22217 1.00937 0.92922 0.99046 1.22236 0.99520 1.00553 0.92535 1.22452 1.09528 0.85991 0.93291 1.16623 0.76750 0.84708 0.82534 1.43602 1.67692 1.07891 1.19128 1.90911 1.54924 1.33992 1.63511 1.84017 1.64701 1.34754 1.20936 0.93348 0.79766 0.97056 0.95728 0.92591 0.91628 0.91352 0.90815 0.90587 0.92153 0.91889 0.89550 0.75034 0.80077 0.79854 0.74440 0.74911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.67 13.97 21.65 0.30 -62.37 16 2 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 3 Si 0.96 43.77 27.73 68.60 1.90 45.67 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.24 -9.64 6.52 99.48 0.65 -8.99 16 7 C -0.24 -13.25 10.47 84.03 0.88 -12.37 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 9 N -0.75 -33.24 5.13 -343.46 -1.76 -35.00 16 10 C 0.16 5.71 5.42 86.38 0.47 6.18 16 11 C -0.09 -2.31 2.02 -10.80 -0.02 -2.33 16 12 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 13 C -0.11 -2.42 4.90 30.60 0.15 -2.27 16 14 C -0.11 -1.82 5.92 30.60 0.18 -1.64 16 15 C -0.11 -1.64 5.77 30.59 0.18 -1.46 16 16 C -0.12 -2.14 5.60 30.59 0.17 -1.97 16 17 C 0.16 3.48 2.23 44.99 0.10 3.58 16 18 H 0.08 2.03 7.57 -2.38 -0.02 2.01 16 19 N -0.69 -14.90 3.61 -445.95 -1.61 -16.52 16 20 C 0.60 14.69 7.77 86.62 0.67 15.37 16 21 O -0.54 -16.13 16.52 -4.05 -0.07 -16.20 16 22 C -0.05 -1.08 7.14 24.26 0.17 -0.90 16 23 C -0.13 -2.54 10.60 22.32 0.24 -2.30 16 24 C -0.13 -2.36 10.60 22.32 0.24 -2.13 16 25 C -0.06 -1.15 7.14 24.26 0.17 -0.97 16 26 C 0.61 11.84 8.08 86.62 0.70 12.54 16 27 N -0.82 -9.81 8.87 -175.99 -1.56 -11.37 16 28 O -0.55 -14.28 17.70 -4.06 -0.07 -14.35 16 29 O -0.15 -2.90 10.14 -7.47 -0.08 -2.97 16 30 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 31 H 0.37 15.19 4.71 -92.71 -0.44 14.76 16 32 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.02 0.88 7.61 -2.38 -0.02 0.86 16 34 H 0.06 1.44 7.18 -2.39 -0.02 1.43 16 35 H 0.07 1.31 6.51 -2.39 -0.02 1.29 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 0.90 7.60 -2.39 -0.02 0.88 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.41 7.90 6.43 -92.70 -0.60 7.31 16 43 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 44 H 0.18 2.75 8.06 -2.91 -0.02 2.73 16 45 H 0.42 3.60 8.93 -92.71 -0.83 2.78 16 46 H 0.42 3.63 8.59 -92.70 -0.80 2.84 16 Total: -1.00 -75.26 378.19 0.16 -75.10 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -1.66 Total: 31.90 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 4.77 Total: 6.12 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -4.63 Total: -125.26 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.21 Total: -33.52 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.90 Total: 45.67 kcal Total: -75.26 0.16 -75.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733078936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.989 kcal (2) G-P(sol) polarization free energy of solvation -75.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds