Wall clock time and date at job start Tue Mar 31 2020 19:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99798 * 2 1 4 4 H 1.48498 * 109.47436 * 269.99895 * 3 2 1 5 5 H 1.48502 * 109.47287 * 30.00063 * 3 2 1 6 6 H 1.48503 * 109.47036 * 150.00193 * 3 2 1 7 7 C 1.38811 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00193 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99879 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99890 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47356 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46890 * 305.00215 * 11 10 9 13 13 C 1.53001 * 109.47007 * 65.00071 * 11 10 9 14 14 C 1.53003 * 109.47007 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47265 * 300.00481 * 14 13 11 16 16 C 1.53001 * 109.47501 * 59.99821 * 15 14 13 17 17 C 1.52995 * 109.47265 * 185.00552 * 11 10 9 18 18 H 1.09001 * 109.46891 * 299.99662 * 17 11 10 19 19 N 1.46499 * 109.47250 * 59.99857 * 17 11 10 20 20 C 1.34779 * 119.99878 * 205.00237 * 19 17 11 21 21 O 1.21610 * 120.00112 * 359.97438 * 20 19 17 22 22 C 1.47290 * 119.99878 * 180.02562 * 20 19 17 23 23 C 1.36570 * 125.80317 * 179.97438 * 22 20 19 24 24 C 1.40064 * 106.92316 * 179.71470 * 23 22 20 25 25 C 1.36568 * 106.92883 * 0.26593 * 24 23 22 26 26 C 1.47293 * 125.80669 * 180.02562 * 25 24 23 27 27 N 1.34776 * 119.99809 * 180.02562 * 26 25 24 28 28 O 1.21604 * 119.99924 * 359.97438 * 26 25 24 29 29 O 1.34548 * 108.38693 * 0.02562 * 25 24 23 30 30 H 0.97002 * 119.99998 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00325 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47044 * 60.00423 * 10 9 7 33 33 H 1.08996 * 109.47643 * 300.00614 * 10 9 7 34 34 H 1.09003 * 109.47280 * 300.00260 * 13 11 10 35 35 H 1.09000 * 109.46663 * 60.00423 * 13 11 10 36 36 H 1.09001 * 109.46890 * 60.00144 * 14 13 11 37 37 H 1.09004 * 109.47045 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47177 * 179.97438 * 15 14 13 39 39 H 1.09001 * 109.46891 * 299.99662 * 15 14 13 40 40 H 1.08999 * 109.47354 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.46663 * 59.99913 * 16 15 14 42 42 H 0.96991 * 120.00341 * 25.00504 * 19 17 11 43 43 H 1.08002 * 126.54146 * 359.97438 * 23 22 20 44 44 H 1.08008 * 126.53363 * 180.26440 * 24 23 22 45 45 H 0.96998 * 119.99847 * 359.97438 * 27 26 25 46 46 H 0.97001 * 119.99723 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 6 5.6164 -2.1912 -0.0011 12 1 5.8659 -1.5452 -0.8429 13 6 6.0064 -1.4986 1.3063 14 6 7.5108 -1.2196 1.3066 15 6 8.2743 -2.5395 1.1810 16 6 7.8843 -3.2320 -0.1263 17 6 6.3804 -3.5107 -0.1269 18 1 6.1310 -4.1567 0.7149 19 7 6.0070 -4.1738 -1.3788 20 6 6.1247 -5.5115 -1.4940 21 8 6.5413 -6.1680 -0.5589 22 6 5.7497 -6.1781 -2.7527 23 6 5.8213 -7.5196 -2.9985 24 6 5.3652 -7.7191 -4.3077 25 6 5.0404 -6.4903 -4.8073 26 6 4.5148 -6.2200 -6.1564 27 7 4.2330 -4.9558 -6.5290 28 8 4.3360 -7.1374 -6.9344 29 8 5.2821 -5.5685 -3.8574 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3620 -0.0007 32 1 3.8486 -3.0425 -0.8908 33 1 3.8492 -3.0422 0.8890 34 1 5.4621 -0.5585 1.3959 35 1 5.7570 -2.1447 2.1480 36 1 7.7607 -0.5739 0.4647 37 1 7.7888 -0.7267 2.2382 38 1 9.3461 -2.3407 1.1808 39 1 8.0244 -3.1853 2.0229 40 1 8.4280 -4.1726 -0.2156 41 1 8.1342 -2.5862 -0.9681 42 1 5.6751 -3.6502 -2.1247 43 1 6.1605 -8.2818 -2.3126 44 1 5.2856 -8.6646 -4.8237 45 1 4.3759 -4.2240 -5.9086 46 1 3.8872 -4.7777 -7.4176 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733078938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:03 Heat of formation + Delta-G solvation = -88.338666 kcal Electronic energy + Delta-G solvation = -29064.612338 eV Core-core repulsion = 24954.327952 eV Total energy + Delta-G solvation = -4110.284386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.97980 -41.26299 -40.38100 -39.40531 -36.58538 -35.46983 -35.03569 -34.15816 -33.84231 -31.81127 -31.59857 -30.24230 -27.20005 -25.92077 -24.45406 -23.75806 -22.79611 -22.15455 -22.06963 -21.39496 -20.94217 -19.96135 -19.58851 -18.74096 -17.99274 -17.79906 -17.44548 -16.65496 -16.30732 -16.07528 -15.88843 -15.58887 -15.47955 -15.42235 -14.98599 -14.74346 -14.63767 -14.46193 -14.32091 -14.23055 -14.19628 -13.69580 -13.67985 -13.05580 -12.76816 -12.66557 -12.22618 -12.16028 -11.95587 -11.87788 -11.83903 -11.65530 -11.40571 -11.28644 -11.26449 -11.12013 -10.94418 -10.93409 -10.26000 -9.89793 -9.29485 -8.02378 -5.36466 -0.56128 0.74524 1.13513 1.38305 1.42625 1.50314 1.90574 1.92582 1.97392 2.38256 2.49079 3.28991 3.37075 3.47431 3.68087 3.73068 3.83787 3.86167 3.98720 4.23733 4.28338 4.32712 4.36458 4.42867 4.44366 4.51216 4.55091 4.71275 4.83454 4.86587 5.03648 5.05756 5.07148 5.11470 5.22497 5.27250 5.30333 5.34831 5.39822 5.44626 5.58471 5.67796 5.75257 6.14769 6.20872 6.31809 6.88368 6.99125 7.08397 7.83131 8.04302 9.19341 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008640 B = 0.003625 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.855869 B = 7722.938118 C =10104.910406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.063 4.063 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.247 1.247 7 C -0.236 4.236 8 H 0.049 0.951 9 N -0.751 5.751 10 C 0.160 3.840 11 C -0.090 4.090 12 H 0.091 0.909 13 C -0.110 4.110 14 C -0.115 4.115 15 C -0.112 4.112 16 C -0.119 4.119 17 C 0.159 3.841 18 H 0.076 0.924 19 N -0.700 5.700 20 C 0.603 3.397 21 O -0.543 6.543 22 C -0.050 4.050 23 C -0.130 4.130 24 C -0.128 4.128 25 C -0.059 4.059 26 C 0.610 3.390 27 N -0.820 5.820 28 O -0.553 6.553 29 O -0.148 6.148 30 H 0.258 0.742 31 H 0.368 0.632 32 H 0.026 0.974 33 H 0.010 0.990 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.414 0.586 43 H 0.183 0.817 44 H 0.185 0.815 45 H 0.420 0.580 46 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.561 -7.828 -7.685 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.254 4.254 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.226 1.226 6 H -0.171 1.171 7 C -0.367 4.367 8 H 0.068 0.932 9 N -0.398 5.398 10 C 0.034 3.966 11 C -0.110 4.110 12 H 0.109 0.891 13 C -0.148 4.148 14 C -0.153 4.153 15 C -0.150 4.150 16 C -0.158 4.158 17 C 0.054 3.946 18 H 0.094 0.906 19 N -0.349 5.349 20 C 0.389 3.611 21 O -0.422 6.422 22 C -0.104 4.104 23 C -0.151 4.151 24 C -0.148 4.148 25 C -0.113 4.113 26 C 0.394 3.606 27 N -0.383 5.383 28 O -0.433 6.433 29 O -0.044 6.044 30 H 0.067 0.933 31 H 0.202 0.798 32 H 0.044 0.956 33 H 0.029 0.971 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.251 0.749 43 H 0.200 0.800 44 H 0.202 0.798 45 H 0.251 0.749 46 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 20.548 -8.701 -7.414 23.513 hybrid contribution -0.771 1.346 -0.266 1.574 sum 19.777 -7.354 -7.680 22.454 Atomic orbital electron populations 1.69900 1.07357 1.26754 1.59582 1.25533 0.96075 1.01398 1.02403 0.85396 0.78773 0.79200 0.78325 1.20007 1.22600 1.17099 1.18988 0.82884 0.93251 1.41606 0.93247 1.42625 1.02236 1.04016 1.90889 1.20775 0.90640 0.87373 0.97810 1.21526 0.92981 0.96080 1.00366 0.89079 1.21519 0.97166 1.00184 0.95979 1.21562 0.93134 0.97686 1.02874 1.21479 1.00692 0.96154 0.96630 1.21846 0.93219 1.01113 0.99598 1.21018 0.95309 0.92562 0.85687 0.90560 1.45986 1.64864 1.06242 1.17826 1.16717 0.77878 0.82440 0.84084 1.90858 1.47787 1.65347 1.38197 1.22414 1.07130 0.93304 0.87565 1.22224 1.00844 0.94975 0.97016 1.22241 0.99259 0.98833 0.94509 1.22457 1.08999 0.88855 0.90957 1.16628 0.76919 0.84118 0.82960 1.43609 1.66428 1.07352 1.20946 1.90908 1.55199 1.45424 1.51808 1.84017 1.63777 1.36614 1.19969 0.93345 0.79757 0.95594 0.97144 0.92527 0.92281 0.90964 0.90867 0.89904 0.92141 0.91907 0.90271 0.74891 0.80009 0.79813 0.74909 0.74449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.52 13.97 21.65 0.30 -62.21 16 2 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 3 Si 0.96 43.57 27.73 68.60 1.90 45.48 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 6 H -0.25 -9.89 6.52 99.48 0.65 -9.24 16 7 C -0.24 -13.23 10.47 84.03 0.88 -12.35 16 8 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 9 N -0.75 -33.15 5.13 -343.46 -1.76 -34.92 16 10 C 0.16 5.70 5.56 86.38 0.48 6.18 16 11 C -0.09 -2.26 1.80 -10.79 -0.02 -2.28 16 12 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 13 C -0.11 -2.67 5.08 30.60 0.16 -2.51 16 14 C -0.12 -2.01 5.92 30.59 0.18 -1.83 16 15 C -0.11 -1.79 5.92 30.59 0.18 -1.61 16 16 C -0.12 -2.12 5.49 30.58 0.17 -1.96 16 17 C 0.16 3.55 1.90 44.97 0.09 3.64 16 18 H 0.08 2.03 7.58 -2.39 -0.02 2.01 16 19 N -0.70 -15.24 4.30 -446.02 -1.92 -17.16 16 20 C 0.60 14.91 7.77 86.62 0.67 15.58 16 21 O -0.54 -16.25 16.52 -4.06 -0.07 -16.31 16 22 C -0.05 -1.10 7.14 24.26 0.17 -0.93 16 23 C -0.13 -2.55 10.60 22.32 0.24 -2.32 16 24 C -0.13 -2.40 10.60 22.32 0.24 -2.17 16 25 C -0.06 -1.18 7.14 24.26 0.17 -1.00 16 26 C 0.61 12.20 8.08 86.62 0.70 12.90 16 27 N -0.82 -10.44 8.87 -175.99 -1.56 -12.01 16 28 O -0.55 -14.56 17.70 -4.04 -0.07 -14.63 16 29 O -0.15 -2.96 10.14 -7.33 -0.07 -3.04 16 30 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.37 15.16 4.71 -92.71 -0.44 14.72 16 32 H 0.03 0.94 7.31 -2.39 -0.02 0.92 16 33 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.06 1.58 7.18 -2.39 -0.02 1.56 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.41 7.86 8.15 -92.71 -0.76 7.11 16 43 H 0.18 3.02 8.06 -2.91 -0.02 2.99 16 44 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 45 H 0.42 4.01 8.59 -92.71 -0.80 3.21 16 46 H 0.42 3.92 8.93 -92.71 -0.83 3.10 16 Total: -1.00 -75.22 382.29 -0.30 -75.52 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: -1.82 Total: 33.09 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 4.77 Total: 6.19 kcal Atomic # 7 Polarization: -121.35 SS G_CDS: -4.94 Total: -126.29 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -0.21 Total: -33.98 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.90 Total: 45.48 kcal Total: -75.22 -0.30 -75.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733078938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.814 kcal (2) G-P(sol) polarization free energy of solvation -75.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds